Array 1 470357-470982 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPXT01000015.1 Gallibacterium anatis CCM5995 contig000010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 470357 28 100.0 33 ............................ CGCATAGGCTTTCGCAAATGTAGTTTTCCCTGA 470418 28 100.0 32 ............................ TTTGCGAAATTTCCTGCAAGGCCTTTCCATAT 470478 28 100.0 32 ............................ ACTAACCGACGAAATTTTATTTATTAATTAAT 470538 28 100.0 32 ............................ GGCATTGCACGAATTACACGAAGCGATTGCCA 470598 28 100.0 32 ............................ TGTCATTGTGTCCCCAGCTTTACTGACTTTAC 470658 28 100.0 32 ............................ CGACTATCCCACAAATGATGAAGCTAGGCATT 470718 28 100.0 32 ............................ TAAACCCACACCGCCGACCACATCATCAATGA 470778 28 100.0 32 ............................ AGATGGAAGAGGCGGCAGATGCCAGAACGTTT 470838 28 100.0 32 ............................ TCAACCTCAAGCATTTCATCACGCACAAATAA 470898 28 100.0 30 ............................ ACGGGAGGTTGTTTTTTTGCTCGTCCGCCC 470956 27 78.6 0 ..............-..A.AT..TA... | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.1 32 CTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CTGCTTTTACTCAAAATTGATGCTTTAAAAAATTACTTTATTATCAATGAAATAGCTCCTATCCCTGAAAAAACAACGGCTGTCCGTTACCAACGGATACAACATAAAGGGAAAAGTGCTTTACGCCGTGCAGAAAAACGTATGAAACACAGAAAAGAATTTTCAGCTGAAATTTTAGAAAAAATGGAGGCAAAACAAGCACAAATCAAACGTTACCCACATATTTTCTTAAAAAGCAGCAGCACTCATCAAGCAAAAATGTTACTGGAAATAAGGCAAATAATATGTTCTAAGCCTAATGAGGGGCAATTTACGGGATATGGTTTAAGTCAAGCTGCATCAGCCACTGTTCCTCACTTTTAATCAATAACCCTTTTTTGGAGATACTAAAAAATCTATCAAAATATCAATAGGTTATAAAACACCTCTAAAAAAGGGTTTTTATATTAAAATGTTCTTTAACAATTGACTCTCCTTATATCATAAGGTATTTGTGTCTA # Right flank : ATACAATTACTTGATTAAATCAGGTTTAAATAGGATTTAAACAATATTTAAATCCTATTGTTCATCCTTTTTACACCAAAATCCCAAAAATTCATTAAACTTCCACTCTGTTTCAGTTTGCCCTTTCTGCGGCAATGAAACGGTTGCATAATGCAATGCAACTATTTCAAGTTTGTCATTATTCAATGCATCTGCTAATTCATCCAACACCGTACTCAAGGGAGAAACAAGCCAAGGCTTAATTCGGGGATTGGTTGTTTTTATCGGTTGATAACAAAAACGATGCCGCTCTTTTACACAAGAAAAAAGATCTTGGTAAGCTTTATCACTATATGCAAACGCATAATGCCAATCGCTTTCCTTATCCGGCAAGCAAACAAAGTCTTCCATAGGCTGTTTTGAATGACGAAAAGGTGCTACAAGTGAACAATGCGAAGTCAATTTCGCATTTTCTGTACGCCAATAACCATTGATATAATTTGTCTTTTCGTTATGGAACA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 513832-510882 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPXT01000015.1 Gallibacterium anatis CCM5995 contig000010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 513831 36 100.0 35 .................................... CTGCACCGCCTTTTTATAGCATCCTGTTGAGTACT 513760 36 100.0 37 .................................... GCAATGGAGTTATTCCCACTTCAAGTAACGCCTGTTC 513687 36 100.0 31 .................................... AGATAACTGTTCCATATTTTCTCCTTAGCCT 513620 36 100.0 34 .................................... TTGATAATTCCGCGTATGGTATATAACGGCTTCT 513550 36 100.0 37 .................................... TATCCGCAGGACGCTCCTTGATGTACAAGGCGGTTTC 513477 36 100.0 36 .................................... TACTGTGCGATTTTCGCAGCACAATACCCATCTACT 513405 36 100.0 36 .................................... AAATAAACGGTTCGCGGGCTTGTTCGCCTGTTTCCC 513333 36 100.0 34 .................................... CTATGGTATGGATTACCCTTTATTTAAAAATATC 513263 36 100.0 37 .................................... CAATCTTAACATTGTTTAATTGTGGATATAAAACGGC 513190 36 100.0 36 .................................... GATTGTGGGTAATGAAAGCACCCGTATTGAAAAATT 513118 36 100.0 37 .................................... TTGTGAATCCGTGGCGGTATGCTGTGTAAGATTTAAA 513045 36 100.0 35 .................................... CTCACTATAAACACAATCTTTTGACTATGCTTACT 512974 36 100.0 36 .................................... GGATATTTACCTGTTCAATGGTTACGGCATAGACTC 512902 36 100.0 36 .................................... TTATGTTGTCTGGTATGCTCCTGCATAAATTCAGGA 512830 36 100.0 33 .................................... TTCACAGGGTCAGGTACATATTGATATAGCATT 512761 36 100.0 35 .................................... TAGACTGCGTGATTAAGTTTTCAAAATAATAGATA 512690 36 100.0 37 .................................... ATAACGGCGGTTTCTACTGTTGTCAATAAAAAATTTT 512617 36 100.0 37 .................................... TGTAGGCGTGTTGGAAAATCTGCCACTTTATATAATG 512544 36 100.0 34 .................................... ACCCACCGCTGAATTGGTGTTCATACCCTTCTGA 512474 36 100.0 35 .................................... CTACCAGAGAAAATACGCTGAGCAGCGGATTCCTC 512403 36 100.0 38 .................................... GGTTGCTAGGTGTTGAGTCAAGTTTAAAATTTCCATTT 512329 36 100.0 36 .................................... TCCTCCACAATATCGATAATAGGATTGCCGTCAGGA 512257 36 100.0 36 .................................... AATTTCTCCTTAGCCTATCGGCTGTAAATTGTCATT 512185 36 100.0 34 .................................... TGTTTAAAAATTATGGTGTGATTGGAATTAATCG 512115 36 100.0 34 .................................... CCTCCTTTGGTTTCGGGTAATGAACGCACCCGTT 512045 36 100.0 34 .................................... GCAATTACTTCTTCGACCCCTTTATTTACCCATT 511975 36 100.0 34 .................................... GATATTCATAGCCATCTATATCTTCTGCCAATCC 511905 36 100.0 36 .................................... AATGGCTGTTATTTGTTGTTGATTAAGTATTTAGTG 511833 36 100.0 34 .................................... TATGTTGGTTTTAGCTTTTTCATTTTTTGACCTC 511763 36 100.0 33 .................................... AAATTGATTTGCCATTTTTGTTTCTCCTTAGCC 511694 36 100.0 33 .................................... TTGAATTGATTTTAAGAAGTTCTAGCTGTTCCA 511625 36 100.0 36 .................................... CTTTTCTTACGGCTAAATACCCACCACCCATAATAT 511553 36 100.0 34 .................................... TTACCGATTAGTATTATTTCTTTTCCCAACATAC 511483 36 100.0 31 .................................... ATTGTGAGGCGGTTGCTAAGTGTTGAGTTAA 511416 36 100.0 34 .................................... AGTTTAGATTTAATTGTTCCATTTTGTTACTCCT 511346 36 100.0 36 .................................... ATGGTATGCACCATCAACGTATTCAAAAGCATCCCT 511274 36 100.0 33 .................................... ATGGGTAATGCCGGCAGATATGCAGGCATTAGA 511205 36 100.0 34 .................................... TTTTGACTGTCCATAATAACCTTCCTTAAATTCT 511135 36 100.0 36 .................................... TTTTTGAGGGCTGTGATATACTTACTGTACACAAGA 511063 36 100.0 36 .................................... TTAAAGCCATTACATGGCTAATACCTATAAATCTGC 510991 36 100.0 38 .................................... AATTTTTTCCCATTCCTCAATTACAGACGAGCAATTAT 510917 36 83.3 0 ...................T...........ACTTT | ========== ====== ====== ====== ==================================== ====================================== ================== 42 36 99.6 35 GTTCTAACCTAGCCCTGTTCTAAAAGGGATTGAGAC # Left flank : GAGGTTGCAAGATTGATTAAACAGGTGGATGACAGTGATGATTACCATATTGCATTGGAAAGTTTCTTTTTAAATCAACTTAGTATGTTGGCACCGGAGGAATAAAAATGAAACAGTTCGTCATTGGTTATGACATTACAGATCCTAAACGGCTACAAAAGGTTTATAAACAAATGCAACATTTTGCGATTCCGTTACAATATAGTATTTTCTTATTTGAAGGAACAAAGGAGCAGTTGCAGAAAGCCATTGCACCGGTGATTGAAACAATTAATAGCAAAAAGGACGACTTAAGAATTTATGAATTACCGAGTTATGGATTAAAGGAGCGAATCGGAAAAACAGTTTTGCCGGAGGGCATTGTGTTAACAGCGCTGCCTACCAGGCTATGATTTTGCTTAAATAATAATCATATTGAGGGTTAACTATGCAGTCATTCATACTTTTTGGCAAAGCCACTTTTAATTTATTGATTACTAATGTATTTTACGGTGTTGGGA # Right flank : TATAAAAGACATTAATGATAATTTTTTAAGGAAATATCAAATTTGAAATTTTTCTATCTATAGTAACGGTTATATATACTTAGCTTTGTTATTACGAAGTAATAATGAAATTAAATATTTAGTGTATAAATTTAGGAGAAATTTTATGAAAACAATTGCAATTATTTTAACTACTTTATTTGCGGTTACCGTTACTGCGCCTGTGTATGCCGGTTCTTGTGATTATTCTTGGCAAACTGCAAAAGATGGTTCCCGTTGCGGAGATCGTGCTGCGGATAGAAGACCGGGAGGCAGATAAAAGATAAAATGCATTTTTTATTATTTACTATAGTTATTATTTTTGCTTCGCCGGCATTTTGTTGGACGGGATATAATTATGATACCGGCTCTTATTTTGAAGTTGAACGTTATGATCATCAAGGATTGGGTGAAGGCCCAGTGGAATATTATGATTATAACAGCGGAGAATATAAATCAGGTTATTTAGATCTATTTCCCGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAACCTAGCCCTGTTCTAAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //