Array 1 162077-161018 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JACHIT010000001.1 Nocardia transvalensis strain DSM 43582 Ga0436919_01, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                      	Spacer_Sequence                                     	Insertion/Deletion
==========	======	======	======	=====================================	====================================================	==================
    162076	    37	  81.1	    38	.......TA..T...AG...T.A..............	CAATCCCCATCCCACAAACTTACCAGTGGGGGCTCGAG              	
    162001	    34	  75.7	    33	.......T...---T..G..T.A.T............	AAATATTGGTTCGACATGTTCAACGACATCCTC                   	
    161934	    37	  62.2	    36	GAA..CTG..GT.G.T.C..A..T...A.........	CGCCGGCGGACGGCCTCATTTGGTGTGTCTTGAGCA                	A [161912]
    161860	    37	  73.0	    36	T......T..T..A..TGA...A........A.T...	ATTTTTAACGCATTCGGCTGAACTGTTATATTTGAG                	
    161786	    37	  67.6	    30	.......G.CA..ATAGG.CAAC..............	ACCTACGAGGCTGAAATCGGCTGGCAGGCG                      	
    161719	    37	  73.0	    21	...C..T.G.T.GC..T.A...A..........T...	TTTCGTCTGGCTGGAATGACA                               	C [161699] Deletion [161662]
    161660	    35	  81.1	    52	TC..........--........A.GT...........	TGCGCGATGGGTGCGCGTTCGACGCGCAGGCCGGCGCTGCTGGCGGAAGCTC	
    161573	    37	  59.5	    35	.CA.G.CGTT.G.CA.A...G..AG........T...	GTGGACCAAGTCGAGGACGTGGAGCTGGCCTGGGA                 	
    161501	    37	  81.1	    37	.......T.TGT...TAT...................	GACACCGCGGGCGGCGCTCAGATATGGGATCGCATCA               	
    161427	    37	 100.0	    37	.....................................	CGCCAGTACACCTTTGTTGATGCTGTCGGTCAGCCGA               	
    161353	    35	  78.4	    36	...CT...T.T...--.G.....T.............	GGCAAGGAAGACCTCGACGGGTTTGAGCTTGAACTG                	
    161282	    37	  73.0	    38	T....A.T....T.T.GG.A....T...........T	AAATGGAAACCGGCAACTGATGTCGGATTTGTCGCATG              	
    161207	    37	  64.9	    38	.C.A...T..G...TTAG..TA......T...C..G.	GCCCCCGGTGAAGCGAGGGTGCTGGTGGGTATAGCCCA              	G [161202]
    161131	    37	  78.4	    40	.......T..T.T..TGGA...A..............	AACCTCGAATACTGGCTCGTTATGATCGGATTCGACGACC            	
    161054	    37	  73.0	     0	TG.CG.T.........GG.A..A....A.........	|                                                   	
==========	======	======	======	=====================================	====================================================	==================
        15	    37	  74.8	    36	CTGGCGGCCGCCCTCCCAGGCGGCCGAGGATCGCAAC	                                                    	       

# Left flank :   CTCGCCGCCCGCACCGGCGTCACCTCCGACGACCTCACCCTGCTCTGGCGCAGCTTCACCCTGATGTTCGAACACGACCGCGCATCCGCTCGCACCGAAATGACCCTGCGCGGCCTGCACATCTTCACCCACCCTGACCCCTACGGCACCATCCCCGCCCACAAACTCACCGACACCATCACCATCACCCCCGACGCAGCCCAACAACCTACAGCCCCTATCCGGGCCTTCACCGACTACACCATCACCGTCAACCACGTTGCCATCCCCGACGACATCACTCTCACCACACTCATCGGATAACTTTGGCTCCCAACACAACTCACGTAAGGACTACAACGATGACCGGAGCGTCAACACAACGAACTCGGTTCGGAACCCTAAGTGCGTGCCGAACAGCAGGAAGGTTCCTAGTCAGCCGCCAAGGGTAAACAACATGACCACAGACCTACCTTCTGTCCGCAAGTGTGAATGGGGACCGAAAGCCCATTTCATTCAGC
# Right flank :  TGGACAAGTGCACCGATGACGGCGACGAGGGTCCGAGCTGTCTTGATTAACCGAGGATTACAGCCTTGGTCCACCTGAACCAGTATCTGCCTGATGAGCTGGAGGCCGCTCCTCCTGAGCCTCCAGAAGCGATCGAGGGGCGTCCCGGCCAATCGGCAGTGGCGGGATGCAGCGGGAACTCGGGTGACATTTTGCGTGCCATTTTCGCTTCGGAACAGTGGGAATCCCAGGGTTCCGGTCGGAACTCGTAGGACGTGTTGGGACGGTGAAATACCAGTTCAGGGCGGTTAAATACCCCAAGGTCGCCAGGTCGCCGCACGGTCTTGGCATATCTACGAACTGATGAAAAAGTGATGCGCTAAGACCCGGCATTTCGCCCGCTCGATGGGCGTTTGTGGCTGCGGAGTGCCATTTTGGGTGCCACTTTGAGCTGGTTCGAGAGGGTTCGGCCAGCCGAATATTGGGAGCACCCCACCGGGCACCTGGATCAAATCCTGGCC

# Questionable array : NO	 Score: 2.55
# 	Score Detail : 1:0, 2:3, 3:0, 4:-0.26, 5:-1.5, 6:0.25, 7:-0.08, 8:1, 9:0.14,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTGGCGGCCGCCCTCCCAGGCGGCCGAGGATCGCAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [1,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGACGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [14-19] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.41,4.87   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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