Array 1 7073-5452 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVS010000002.1 Listeria seeligeri strain FSL L7-0912 NODE_2_length_306056_cov_35.847401, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7072 36 100.0 30 .................................... TAGTAACAGGGGAAGTGCTTTCAGCTAGAA 7006 36 100.0 30 .................................... TCTTTTGGATAATCCTCTAATTTGGCAATA 6940 36 100.0 31 .................................... CATTCTTCCGCTTTGTCGCTAGTGTAGGTGA 6873 36 100.0 30 .................................... TTCGCTTCCGGCACGGCCACATAAATGTAA 6807 36 100.0 30 .................................... TATGGAACCAACTATCGCCTATCGTTTCTA 6741 36 100.0 30 .................................... CAAACTTTTTTATTTCTTTTTCTGTGAATC 6675 36 100.0 30 .................................... TAAGAAGGGGATTAGGTAAATACATATATT 6609 36 100.0 30 .................................... AGAAGATTACTTACAAAAAAGCATTCTTCC 6543 36 100.0 30 .................................... ACGGACGGTGTAGGTTTTGTCAGTGATACC 6477 36 100.0 30 .................................... TGTCCTTGTTTAATCCCGGTTCTAACATGA 6411 36 100.0 30 .................................... TTTTGATATCCCGGAGACTATCGACAAAGA 6345 36 100.0 30 .................................... TACCCGGAATTGGAGAATTTGGGTCATCAT 6279 36 100.0 30 .................................... TATCTCCCAAATATAGAGGTCTTATCGAAC 6213 36 100.0 30 .................................... CATGCTGATGTTTGGACTGATACGGAAGTA 6147 36 100.0 30 .................................... TTCGTATAGATTAATTGCATCGGAGTCCAA 6081 36 100.0 30 .................................... TATGGAAGAGGAATTTATTCATGAGGAAAG 6015 36 100.0 30 .................................... CTCTTCTTTCACTTTCTTCACTTGTCTGCA 5949 36 100.0 30 .................................... AGTGAACATGATGTAGAAGTGAACGTCTTG 5883 36 100.0 30 .................................... TACGCAAAGACCAGATGCTAGCTTTATGCC 5817 36 100.0 30 .................................... CGTTTGCGGATTGCCCTCGTTAACGATTCG 5751 36 100.0 30 .................................... TCTAAGAAAAACAGAAAATAATCTTTTAAA 5685 36 100.0 30 .................................... AATTTAGCAAACTTTTTGGCTTTGACCATT 5619 36 100.0 30 .................................... AGTGAACATGATGTAGAAGTGAACGTCTTG 5553 36 100.0 30 .................................... TACAATGAATAATCATATTACCGACTTAAC 5487 36 97.2 0 .............................T...... | ========== ====== ====== ====== ==================================== =============================== ================== 25 36 99.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGACAAACTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGACTCGAATGCTCTTTGAAAATAAAATATATTTTAGTTAAACCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : AGAGAGGGTGAAATATCCTTTACATCTATTTTTTTCTATATCTAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTCTATTCTAACAAAGGTGGTCTTTTTTGTGTATTAAAAAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTTGCTTACTAGGATTTATGTCCCAGCCTCTTTTTCTATACGGACTGCTGCTTAAAACAAAACACCGAAGCAATTATCAATAACACAATCGCGGGAAATGCCAAAAGCGCAGTAATGGCAAAACATGCGCATCCGATTATTCCTAAAATATGACCAATAATAGAAATCCCGGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGGCATTGCATAAAAGAAAGCACCGACTCCGCTTGTTTCTGATCCATCTCCGCCTGAGAAACTTTCACTGAAAGCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 183876-182096 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVS010000004.1 Listeria seeligeri strain FSL L7-0912 NODE_4_length_250333_cov_33.565697, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 183875 29 100.0 36 ............................. ACGCCAATCTAGTAACAGGAGAAGTGCTTTCAGCTA 183810 29 100.0 37 ............................. GAAGATACCGTCCTAGACCCGGCATGTGGGTCAGGAG 183744 29 100.0 37 ............................. ATGGAATACAAAAGAAAAACCTACAGAATACAATTGT 183678 29 100.0 34 ............................. ACAGATTTTAAATATGATAACAGCAAAAAACACA 183615 29 100.0 34 ............................. TTAGTATACAAATTCAAAAGCTCAAAGTCTAATT 183552 29 100.0 34 ............................. ATATCATCAACTAAATAAACACCAAATTCACCAT 183489 29 100.0 36 ............................. AAAATAAAAGTCAAAGAAGCGACTAAAAAAGGCTTT 183424 29 100.0 37 ............................. ACAAAAGGCTACGCAGATTGGGACCGCCCTATTTGGT 183358 29 100.0 37 ............................. ATCTTTCGAGGTAATGAATTGTTAGCACGTGGCGTGC 183292 29 100.0 36 ............................. ACAATAACAATTTGATTTTCATAATCATGTTTTTCG 183227 29 100.0 37 ............................. CTATTTGCCCTTTATAGTTCAAGTATCAAAGATAAGT 183161 29 100.0 34 ............................. GAATAAAGTCCTACTTTGACCCCAGTTTGACCTT 183098 29 100.0 35 ............................. GCCATAGGAGCGCCTACAATAGCATCGGTAAGAGT 183034 29 100.0 34 ............................. TTTGATAAATTTGACGTTCTCCCATCACTTTTCC 182971 29 100.0 36 ............................. CTTTTTTTAAAACATAGATAACCTTCGTCGGAAATT 182906 29 100.0 34 ............................. AGAAAGTTGTCGGCTGCGTTCATAACCTCACGAT 182843 29 100.0 37 ............................. ATGTTTTCTAGGAATCACCTTTGTATTATGAGATTTT 182777 29 100.0 37 ............................. AAATGTTCAGCTAATTCGTTGTTTGTTGCCGTAGGAT 182711 29 100.0 36 ............................. TATTCAACTGAATCAGGACCTTTTTTTGCTCCATCG 182646 29 100.0 37 ............................. ATCATTCTTAGGAGATTATAAAATATTAGAGGTTATA 182580 29 100.0 35 ............................. ACAGACGGCAATGAATTTCAAGAACGATTTTTAAA 182516 29 100.0 38 ............................. TCGCTTATATGCGAGTTGACAGCCGCGATAATATACTC 182449 29 100.0 35 ............................. ATATAACTAACATTTTCAGCGACGGACGCGTCCAT 182385 29 100.0 37 ............................. CTGGTTGGAAAATGAAAAAAGTGGCTAATGGTTATGT 182319 29 96.6 36 .........................G... TTCGAAGTTCAAACAACAAAAACAGCAATGGCTTAT 182254 29 93.1 36 .......C....................C TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 182189 29 82.8 36 ..A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCAGGTGAGCCC 182124 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ====================================== ================== 28 29 98.2 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGCAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGCGAGAAAATAAAATAGGTTTTACCTGCTTTTTACGGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGTTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 195723-193684 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVS010000004.1 Listeria seeligeri strain FSL L7-0912 NODE_4_length_250333_cov_33.565697, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 195722 29 100.0 34 ............................. CGAATACTAAACGCGCTTAATGAAGCACTTGACA 195659 29 100.0 36 ............................. TGAGGAATCATATAAATGAATTTCGTATGGTCCGTC 195594 29 100.0 36 ............................. AATGAATCCGAGGATTTGGCCGAGGAAGCTCCAGCT 195529 29 100.0 37 ............................. TTCTTTCCCTCCACGTAACAAATATATTTGAAATCAT 195463 29 100.0 37 ............................. TATTTAGCGATGGGATTAATTTACTGCTGGGTTTCTT 195397 29 100.0 36 ............................. CCTAAAATGTCAGCAAAATCATCTACGCTGGAACCT 195332 29 100.0 35 ............................. GTAACAACGGTGATAAGTCGCTGTAACAGCTCGTT 195268 29 100.0 36 ............................. AATAATGCATGTGATCCAGTGACATCCAAAAATGCC 195203 29 100.0 34 ............................. TGGCATTAAAGGCATACGAGAGTCAGATGCAATG 195140 29 100.0 37 ............................. TCTGTAGTGTGAAAATGATGTGAGGAGCTGGCTAGAC 195074 29 100.0 36 ............................. AACGCTTTCGTGCGGTGGCATTACGATAAGACCAGG 195009 29 100.0 34 ............................. CAATAAATGCAGTAATAACATCCATTTCCGATTT 194946 29 100.0 37 ............................. TTCTTATTATCAATATTTTCAATACTTACCAACTGTC 194880 29 100.0 36 ............................. TATTTTTTTAATTAACAATCGCTTTGATGAGTGCGC 194815 29 100.0 35 ............................. CCAGATAAAACCTGGGATACCTGCTTTTTGATGCC 194751 29 100.0 37 ............................. GTGGTAACAGCGTTTTTGTTGCCGATAGGTGCGCTCC 194685 29 100.0 36 ............................. TGTTATCTACTCCGTACTGTTCAATCAATGGCAACC 194620 29 100.0 34 ............................. AAATTTGAAGAAGTAAAAGAACCGGATGAATTGG 194557 29 100.0 37 ............................. GAAGGGGGTAGCGCTGGGAGACAGTTGTTGTTACTGC 194491 29 100.0 35 ............................. TTTTACTGACCTCGATTCGCTTTTAATTTTTCACC 194427 29 100.0 36 ............................. ACCGTAATTAATAAAGGCAATGCCGCAATTATGGCA 194362 29 100.0 35 ............................. ATCATTCTCATGTGTTTTAACAGGTTTTAGCTTTT 194298 29 100.0 36 ............................. TCGATTAGCGCAAATATAAGCTTCACACCTGCGTCA 194233 29 100.0 35 ............................. TCGTGATAAACCTTTATCACAAAACCGCCATCGCT 194169 29 100.0 35 ............................. CCCATTAAAATAGCAGAAAACAGCACCGCAAATGC 194105 29 100.0 36 ............................. AAAGTCTTTCGCAAAGTGTGCGTCCCCACGCGATCA 194040 29 100.0 34 ............................. GTTGAAGAAGTGGAGGGAAAATAAATGACTTTGA 193977 29 100.0 39 ............................. CTAATAGTAGACGATTATTGGGACGATGTATTCCGACAT 193909 29 96.6 37 .......................A..... TCTTATTTTTCCTCCTCTAAGTATTTAAAAATTACCG 193843 29 100.0 38 ............................. CGAGCTATTGTATCATTTTTGAAGTAATCTAGCTATAA 193776 29 96.6 34 ........................C.... AATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 193713 29 86.2 0 ........C....C..A...........G | T [193686] ========== ====== ====== ====== ============================= ======================================= ================== 32 29 99.4 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCAGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTACGTATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGCGGGATGCGTTGGGAGAGAATGAGAGTGGGGAGGATTTGGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCCAATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCCAGCAACTAAAACATAGCTAGTAGCACTATCATAAATTTTCCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATAAATTATATAGCAAATGTTAAAAAAACACTAGTATTTTCAGTGTTTTTTTTTTCGCTAGCATTCACTCTTTTTTTATGTTAAATTAAACACAAACAACTGAGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTAAGTTTATTCAAGACAGGAATTGAGAAATCTAGTCCAGAAAAATATGGAGATTTATTTGGTAGTAATATGCGGAAAAATTACACCTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAAGAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 202553-201946 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVS010000004.1 Listeria seeligeri strain FSL L7-0912 NODE_4_length_250333_cov_33.565697, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 202552 29 100.0 36 ............................. ACGATCCAAGAAATTTGAATGCTAACTGGGTACCTG 202487 29 100.0 36 ............................. AGTGAAGGACATGCCCACATGGATGCAAAAAGGATG 202422 29 100.0 36 ............................. TGATACACAGCCTACTAATGCAGCTATTATCAAAAC 202357 29 100.0 34 ............................. TAATTTGTTCGGCTTTTTCAGCTCGTTGTTGTGC 202294 29 100.0 34 ............................. GATGAATACGAGGATGAAGATGGTGGAGATGAGG 202231 29 100.0 35 ............................. ATAACAACCTTATTTATTGCTTGCAAAAGCCCTGC 202167 29 100.0 35 ............................. TTTTCTAACATTTTATCAATATAAGATTGAGCTAT 202103 29 100.0 35 ............................. GGTCGAATTAGTTAATATTGTCTCGCCTTTATTTT 202039 29 100.0 36 ............................. ATTTGAGCTTTAGTTATTTGATGTGGATTATTTATT 201974 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ==================================== ================== 10 29 99.7 35 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAGACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGCTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGA # Right flank : GTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGCGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTTATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //