Array 1 1622805-1623625 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAEMHU010000001.1 Salmonella enterica subsp. enterica serovar Heidelberg strain IC9B 1, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
   1622805	    29	 100.0	    32	.............................	TTCCAGAACCGTTTGACTTACTGTGGCCATTA	
   1622866	    29	 100.0	    32	.............................	GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA	
   1622927	    29	 100.0	    32	.............................	CTCCAGCGCTCGAATTTATTTGAGGCCACCAC	
   1622988	    29	 100.0	    32	.............................	TTTTGATACGTAGTATTCATTACGCCTCCTAG	
   1623049	    29	 100.0	    32	.............................	GCGAGGTCAATAAAAAATGGTGTGGCTTTACC	
   1623110	    29	 100.0	    32	.............................	CCGGCATCAGCGCCGATCCGTTCATAGTGCCC	
   1623171	    29	 100.0	    32	.............................	AAAAAACAGAAGAACGGCAAGCGGCACCTCAA	
   1623232	    29	 100.0	    32	.............................	CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC	
   1623293	    29	 100.0	    32	.............................	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT	
   1623354	    29	 100.0	    32	.............................	CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT	
   1623415	    29	 100.0	    32	.............................	CAGGTTATGCGCAAAAATTAATTCATATTATA	
   1623476	    29	  96.6	    32	.................A...........	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA	
   1623537	    29	 100.0	    32	.............................	CGTTCATCGGCAGCGTCACGCAATATGAAGAT	
   1623598	    28	  82.8	     0	...............A.AA....-.G...	|                               	
==========	======	======	======	=============================	================================	==================
        14	    29	  98.5	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT
# Right flank :  GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-6] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.65,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//


Array 2 1639884-1641547 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAEMHU010000001.1 Salmonella enterica subsp. enterica serovar Heidelberg strain IC9B 1, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                                                           	Insertion/Deletion
==========	======	======	======	=============================	==========================================================================	==================
   1639884	    29	 100.0	    32	.............................	GGGAAAAATCAATAAAATCAATGATAAGCAGT                                          	
   1639945	    29	 100.0	    32	.............................	GCTGGGTAGTGGAGTAATCATTATGTGTGGTG                                          	
   1640006	    29	 100.0	    32	.............................	CAGTGAGATGCCGCCAATTTGTCAAATAAAAT                                          	
   1640067	    29	 100.0	    38	.............................	CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA                                    	
   1640134	    29	 100.0	    32	.............................	CCTTTAATCGCCTCTTATCGCCTGGATTGGTT                                          	
   1640195	    29	 100.0	    32	.............................	TTAAATCCATATACGGGCCTTGCGGGTTTGCC                                          	
   1640256	    29	 100.0	    32	.............................	GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT                                          	
   1640317	    29	 100.0	    32	.............................	GCGCGCCAATAATTTTATTGACGATTTCATCA                                          	
   1640378	    29	 100.0	    32	.............................	CCGCTGACGCACTGGATCAACCTGACGCAACG                                          	
   1640439	    29	 100.0	    32	.............................	TTGCAGGGCGATATTGTTGTTGGTGAATGGGA                                          	
   1640500	    29	 100.0	    32	.............................	CGTCGCGGAAAATTTCGCATTGACGATAAAGA                                          	
   1640561	    29	 100.0	    32	.............................	TTACGTGTTTATTCATCTGTTGCATTAGATTC                                          	
   1640622	    29	  96.6	    32	............................T	GAGGCGTACAGGCTGTTAGATGAGAAATTACC                                          	
   1640683	    29	 100.0	    32	.............................	ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC                                          	
   1640744	    29	  96.6	    32	......T......................	GTTTGCCGTATCTTCGATCATACCGGAACGGT                                          	
   1640805	    29	 100.0	    32	.............................	TGGATTATCTGTATTTTACGGAAGTGGGCGCG                                          	
   1640866	    29	 100.0	    32	.............................	GTCGTTCATCAGGCACTACCGGCACTTTCTGG                                          	
   1640927	    29	 100.0	    32	.............................	ATATTCGCCGCTTTCCATTTACCGAACGTAAC                                          	
   1640988	    29	 100.0	    74	.............................	AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC	
   1641091	    29	 100.0	    32	.............................	AGCCGTTTCCGCTAAATACCCCCGCAGTGATT                                          	
   1641152	    29	 100.0	    32	.............................	TTCTTGAATATGATTGCGGGTATATGTGGATA                                          	
   1641213	    29	 100.0	    32	.............................	TCTGGTTATAACATCGCAGCAAAATCAAAAGA                                          	
   1641274	    29	 100.0	    32	.............................	GCAACCCATTAATTAACTAAGCAGTAATAAAC                                          	
   1641335	    29	 100.0	    32	.............................	TGACGAGGTGCGAGCGATGGTATCAAGGCCTA                                          	
   1641396	    29	  96.6	    32	.....T.......................	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC                                          	
   1641457	    29	 100.0	    32	.............................	AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA                                          	
   1641518	    29	  96.6	     0	A............................	|                                                                         	A [1641544]
==========	======	======	======	=============================	==========================================================================	==================
        27	    29	  99.5	    34	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                                                          	       

# Left flank :   GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT
# Right flank :  GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG

# Questionable array : NO	 Score: 6.13
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//