Array 1 1622805-1623625 **** Predicted by CRISPRDetect 2.4 ***
>NZ_JAEMHU010000001.1 Salmonella enterica subsp. enterica serovar Heidelberg strain IC9B 1, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
1622805 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA
1622866 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA
1622927 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC
1622988 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG
1623049 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC
1623110 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
1623171 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA
1623232 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC
1623293 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
1623354 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT
1623415 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA
1623476 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
1623537 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT
1623598 28 82.8 0 ...............A.AA....-.G... |
========== ====== ====== ====== ============================= ================================ ==================
14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT
# Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG
# Questionable array : NO Score: 6.19
# Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.65,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 1639884-1641547 **** Predicted by CRISPRDetect 2.4 ***
>NZ_JAEMHU010000001.1 Salmonella enterica subsp. enterica serovar Heidelberg strain IC9B 1, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ========================================================================== ==================
1639884 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT
1639945 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG
1640006 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT
1640067 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA
1640134 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT
1640195 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC
1640256 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT
1640317 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA
1640378 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG
1640439 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA
1640500 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA
1640561 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC
1640622 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC
1640683 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC
1640744 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT
1640805 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG
1640866 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG
1640927 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC
1640988 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC
1641091 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT
1641152 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA
1641213 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA
1641274 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC
1641335 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA
1641396 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
1641457 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
1641518 29 96.6 0 A............................ | A [1641544]
========== ====== ====== ====== ============================= ========================================================================== ==================
27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT
# Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG
# Questionable array : NO Score: 6.13
# Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.92,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//