Array 1 1820807-1819801 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016277.1 Flavobacterium columnare strain Pf1 isolate Yellow catfish chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1820806 36 100.0 29 .................................... CTTGTCTTGATTTTATGTTTTGAGGATAT 1820741 36 100.0 30 .................................... TAGGAGAATATCTTCCTGTTGGTTGACCAT 1820675 36 100.0 29 .................................... GTTTTTCCTCTAAAACCTCGAAAACACGG 1820610 36 100.0 30 .................................... AAGCGTTTTTTAACTAATTTGATATTTAGA 1820544 36 100.0 30 .................................... CCTATGCTGCCTTGGTCAACGGAATAAGAC 1820478 36 100.0 29 .................................... TCACGTCGTTAGGTTGATTATTAATACAT 1820413 36 100.0 30 .................................... GATGTTTTTAATTTGTTTTATTGTATATTT 1820347 36 100.0 30 .................................... AGGTGTACCGCCTATATCTTCTAAATTGAT 1820281 36 100.0 30 .................................... TCTTCCACCGACAATAGTCTAAATAAATCT 1820215 36 100.0 30 .................................... TCTTCCACCGACAATAGTCTAAATAAATCT 1820149 36 100.0 30 .................................... TCAATATGAGGCATGTTAATTCCAGTAAAT 1820083 36 100.0 30 .................................... TATAATACCCTGACGACCAAATCTTTTACA 1820017 36 100.0 29 .................................... CTGTCTTACAAAGCAATCCAGTACGTGGA 1819952 36 100.0 29 .................................... TTGCGCAAAATCTGTGATATTGTTTTTAC 1819887 36 100.0 15 .................................... CACACACACACACAC Deletion [1819837] 1819836 36 69.4 0 .........................AGGGACGAGCG | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 98.1 29 GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Left flank : TGAAATCATAAATTTAGAAAACATAGATATTGAAATTTTACTTAAATATTATGATTATAATACTGAAGAGTTGAAGGAAAAAATAAAAAATATGGATGAGGATGAAAAAGCCAAAATAATTAATACTAAAGAGAATTATAACAAAATAACCAATGTTTTAATTAAAAAAGCACTTGTTTTAATTATCATTCGCAACAAAATGGCGCACAATCAATATCCACCTAAATTTATTTACGATTTAGCGAATCGTTTTGTCCCAAAAAAAGAAGAAGAATACTTTGCGACCTATTTCAACCGAGTTTTTGAAACCATAACAAAAGAATTATGGGAAAACAAAGAGAAAAAAGATAAAACACAGGTCTAAATACAATTGCTCTTTGACATTTTAAATTAGGATTAAAAAAATGACTACATTTGCAGTGATTAAAACAAAAAAAGTTCATTTTTTTGTATAAAAAATTGTAGTAATCCCTTACTATGAGAGGCTTACCAGCGTTTAG # Right flank : TTAAAAAATAGTCCAATGGACTATTTTAGCGAAGTAGCCAGGAGGCGCGTGGGCGTTTAAAACCGAATTCAATTTTTTTGAAGGAGGGACGAGCGTTAAGGAAGCTGTCCAAAAAGTACTAATTCAACATCCAGTTTGTCACTCCTACGTAAGGAGGAGTCTCATAATCAATAGTATGTAATTTCTTCCTTTGGTCAAAATCACAAGATTGCGAACTTTTTGGACAGTCTCTAGCAAAATAGCGAGCAGGCGTTTGAAACCAAATTCAATTATTTAAAAAATAGATAAACCATAATTCTTATTCATAGAAATACCTCTTTTTTTAAAATAACAAAAACAAACCTATAACACAATCAAGTAAATATGATCTGTATACTACCTCCTAAACTTCCTTATAATTTAACCTCAACACCTAAGATATTTTTTGTAAATTTGAATCATCAAACCATTTGGAAACATGAAGGCTAAATATATTAATCCGTTTACCGACTTTGGATTTA # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 2379667-2377783 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016277.1 Flavobacterium columnare strain Pf1 isolate Yellow catfish chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2379666 36 97.2 30 ......A............................. TCATCATTTATTAATGAATCAAAATTATCA TAATA,T [2379652,2379663] 2379594 36 100.0 30 .................................... TTTAGTTATTAAAATGATTATCAAAGCGAC 2379528 36 100.0 31 .................................... TTTGTCGCTTCGCCTTAAAAAGTATTCTATA 2379461 36 100.0 30 .................................... GGGCTAAATATGGTGGTTTTGAAGAAGATG 2379395 36 100.0 29 .................................... CCCTTTTATTTTGAAATCATCAATCTTCA 2379330 36 100.0 30 .................................... TGTCTCCATTTTTAAGAGCTTTGATGTAGT 2379264 36 100.0 29 .................................... TAAAACCTCACGGCGACGAACTAAAGAAG 2379199 36 100.0 29 .................................... GACGATGCTGACGATATGGAGTCACGCAT 2379134 36 100.0 29 .................................... CTGACAAAACCTTTCAATGGCATTTGTTA 2379069 36 100.0 29 .................................... TAGAAAGTCGATATAACAACGGAGCAAAG 2379004 36 100.0 30 .................................... CGAATTTCATAGATTAAAACCTGGGGAATT 2378938 36 100.0 30 .................................... CATTGTGATTGACGTTTGTATTCATAGTTT 2378872 36 100.0 30 .................................... ATAGATCAAGACAATCCAAATAGATTTAAT 2378806 36 100.0 30 .................................... TGTAATTGGAACTCTTGTTGATGGTATAGG 2378740 36 100.0 30 .................................... TAAAAATGATATTACACAAAAAGCAAATAT 2378674 36 100.0 30 .................................... TTATTCAAAATTCTTTAACGAATAGATGTT 2378608 36 100.0 30 .................................... ATTCTGTGGTAAGACTAATGCAGGTGGCTG 2378542 36 100.0 30 .................................... ATAATCCATTATAATTTCCTCGCCTATTGC 2378476 36 100.0 30 .................................... CAAAAGTTTCAAAGGGATTTGTATCCGTGT 2378410 36 100.0 30 .................................... CATTTAGATTTAGTGAAGGAGCAGTCAAGT 2378344 36 100.0 30 .................................... AGAACCTTTGTCTAAAATAACAGTAGAACA 2378278 36 100.0 30 .................................... AAATTAATTAAAAGAAATTTCTTAAATAAG 2378212 36 100.0 29 .................................... CTCTATTATTTGGACCTGTTAAATCGTCT 2378147 36 100.0 29 .................................... TCAATCGAGAGCGACGTATGAACAAAAAG 2378082 36 100.0 30 .................................... TTCTTTTGTCATAAACTCTAATTTTCCATT 2378016 36 100.0 30 .................................... ATAAGGGTATTAAAAAAGTATAGTTTCATA 2377950 36 100.0 30 .................................... TCGGAAAAGAAAACATGACTGCTGCGAATG 2377884 36 100.0 30 .................................... GAAGTTTTTACCTTTTTCGAGCTTCGCGTC 2377818 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 29 36 99.9 30 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : TCCAATTAAATAAGTCGATTAACTAGCAACTTGAATTAATTATGATTTAAGCGAGCAAGCTAAAATAGATTTGTTGCGTATTTATGAATATGGAATTGGTCAGTTTGGTCTAGACCAAGCTGATAAATATTTTGACATGATGCACGATTGTTTTAATAAAATTGCTAAAAATCCATATTTATTCCCTTTGGCATCAAATATTAAGTCAAATTATTACAAATGTGTTTGCGGAATTGACACCATCTATTATAAAGTTGTTACAAATGGAGTTATCATTACAACAATAGTCGGAAGGCAAGATATTGAAATTAAAATTTAGTTCATTGACATACACTATCAAATCGCAAATAACCAAACCTCATACTGATTGATTTGATTAAAGATTAGAAACCGAGGGACGAGGTTCAACGAAGTCAAAACACGATATTATTTGGTTAAAAATTACGATTGTAATTTCAGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGT # Right flank : AGCTAACAGCTTAGTTATTAAATATCAAAGCATTAAGCCGAAATATCGTTAAAAAAAATGCTTCTTTTTTGGCACGTTATACCAAGATTGAAGCATTTTTTTATTTCTAAAACAGTTCCAGTTGGGTGGGTTGTGGTGCTTTAGGGGTTTCTACTTTACCCCAAAAGTTTTGTATGTTCCCAAATTGCTTGTCTGTAATTCGTAACATACTTACTTTTCCTGAAGGAGGCAGGAGTTTGTGTACACGTTTTTCATGTACATCGGCACTTTCGCTACTGGCACAATGCCGTATATATACCGAGTATTGCATCATACTAAAACCATCTTTCAAAAGTTGGTTCCGAAATCCAGAAGCATTTTTTCGGTCTTTCTTAGTCTCAGTAGGCAAATCAAAAAACACAAACAACCACATAATTCGATACCCGTTTAAATCCATAATTTTGGGTATTTTATCTTTTTACGATCGCCCGAAAAACACTGTTGTAAGGAACTTGCCGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //