Array 1 40499-39935 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNPO010000015.1 Holdemania sp. 1001095H_141210_F2 NODE_15_length_65790_cov_46.4341, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 40498 33 100.0 33 ................................. ACCGCGGACACCGGCGACAATGAACCATATTCC 40432 33 100.0 34 ................................. TTTTAGAACCCGTTCTCTGTTCGCTTCGGCTTCT 40365 33 100.0 33 ................................. CCATCAGGACAACCGCCATCTGCCAACTCATCT 40299 33 97.0 34 .................A............... TACTTGTAATTCAATTATTCGGATAAAATCTGCT 40232 33 100.0 33 ................................. TTGATCCGCTCTTTCACACGCCGGATTTCTGTG 40166 33 100.0 33 ................................. ACACCATGCTCGATAAAGCATGAATTCGATCAT 40100 33 100.0 33 ................................. TGACAAATTCCTAATCATTGAAAAAACACCTGG 40034 33 93.9 34 .........T.....................G. TTATTACCTATATAGGTCTACGCTATAGGTTCAC 39967 33 81.8 0 ......T..T..A.T.....C..T......... | ========== ====== ====== ====== ================================= ================================== ================== 9 33 97.0 34 GTCATACCGCGCGAGCGGTATGTGGATTGAAAT # Left flank : TGGTTTATTTCCAGATCGTGCAGCAGTTTGAAAACAATTTGATTTATCCGCGGGTTGTGGGGAATTCCGTAGGTCTTCCGGGGATCTGGGTCTTGTTATCCATCGTAGTATTCGGTGGTCTGTTAGGGTTGTTCGGAATGTTGATCGCAGTTCCGGCAACGGCAGTTCTCTACACCTTGTTAGGTGAATTCGTCAATGGCCGGATGCGGAAAAAGGGACAGATTTTGGATGAATCCGGATTGCTCAGTCTGGATTCAATTTCAAGTCCTAAGCAGGACTCTTCATCTTCGAACGAGAATCAATAAGCTTAAGCGCAAGGTCTTCAAAGGCCTTGCGTTTTTTGTCAATTTGAGTGCGAACATGAAGTGAACATAAAAGCCCAGGGAGGTTCGCACCGTAAAAATGTGAATATTAAGGAAAATGTTGCAAGTACACTCAAGAATGTTTATGATAAGAGTGAGATAGGAAACATATGATCTTAATTCAGTTTCTTATCTGCG # Right flank : CTAAGACCTGTATACCTGCTGATCCACCCGTTCATACCTATCCTTGTACTCACACACTAAAAAACCTGTTTTCTGCCACCTTAAGCTGAGAAAACAGGCCTTTTTCATTTCACTCTAATCTACATCCTGATCTGTATCGTTCCAAGCTCGGATCGTACAACCATCCTGATCCGGCTCCGCAACATAAACCTGGGCTGGATGATCCTGATCACTGACCACGAAAGCAAACTTGATATTCGTACCAACACCCCAGCGCCCTTCCTTATCGACGCAAATTAAGGAAATCGCTTCAGCCCTGCCCCGTTTCCGAATTAACTTCCGCGTGAATTCTGCAACGAGCGATGAAGCCGCTCTCTGGGGATCCTGTCCCTGCTGCAGTCGGCGTACCGCCTCATAGCTCAGACACCCTTTCATGATTTCTTCACCCACGCCCGTAGCGGCCGCAGCCCCGATTTCACTATCCGCATAGAAACCACTCCCGCAGACCGGCGAATCGCCCA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATACCGCGCGAGCGGTATGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCATACCGCGCGAGCGGTATGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 21700-19984 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNPO010000031.1 Holdemania sp. 1001095H_141210_F2 NODE_31_length_37234_cov_50.1657, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 21699 33 100.0 38 ................................. ATCTATACGATAGGCCACAGGCAGGAAAGGACTCTGAC 21628 33 100.0 36 ................................. TTGAGGCAACCGTAAAAACTGCGGAGAGGGCACTGC 21559 33 100.0 33 ................................. CCGAAGCTCGATTACTGCGGCTTAGAAGCAAAA 21493 33 100.0 33 ................................. ATAGTGGCGGCTTAAGCTTATCTACATTGCCCG 21427 33 100.0 34 ................................. GCATAATGGGGCGTTGTGCGTGTTAGATGAATGT 21360 33 100.0 34 ................................. ATACAAAATAATAGCCTTATCAAGCGCGAGCAGT 21293 33 100.0 35 ................................. CTGTCCGCCGCATCGGGGTACAGACCATGCGTCAG 21225 33 100.0 33 ................................. TTTTATCAACGACTTAAAAATAACGACTTTATC 21159 33 100.0 35 ................................. TATTCGTGCGACGATCGTCTTCAGCAGATCGTTTT 21091 33 100.0 34 ................................. AGGCTCGCGGTGCAGTCCATTATCATATTTTGTC 21024 33 100.0 33 ................................. ATAAACATTACAAGAGCATTTCTAGAAATGCCA 20958 33 100.0 34 ................................. TCTATTATGCTATGCAAGCGTGGCTCAAAGATGC 20891 33 100.0 34 ................................. GGTCAACGCTGGTTGAAGCGTAGATGTAATAATT 20824 33 100.0 35 ................................. ATGCGTAGTCTGATTATCGAGAAACAAATATCCCT 20756 33 100.0 37 ................................. TGCGCTTCGGGTAGTCCGTGTCCAAGTCTGTCCACTC 20686 33 100.0 34 ................................. CTTCATCGGGAATGGAGTCTTCCCTAATCCGTCA 20619 33 100.0 39 ................................. GTGATGGGATGGCAGAAGGGATCAGGCAAGGAAGATCGG 20547 33 100.0 33 ................................. GACCACGCCCATTCCGGCATAGATCGTCATGTC 20481 33 100.0 35 ................................. CCCATGGTCTGATCCGCGATGCGCAGGGCCGCAAA 20413 33 100.0 36 ................................. TGTATTGGTTTAGGCTGGTATTGCGAAAACATGGAA 20344 33 100.0 38 ................................. CAGATCGTGGATAATGATGTTATTTTCACGATCCGGCC 20273 33 100.0 33 ................................. TCATTTCCTCCCATTACTCATTGACCGAGTATT 20207 33 100.0 35 ................................. ACGACTCATAGCATTCACAAGGGATACTTCAATAC 20139 32 93.9 24 ...........-..............A...... TGATACTGATGATATATTTGGTGT Deletion [20084] 20083 32 97.0 35 ...........-..................... ATCACCTCCTACTCGTACCGGATGAACCGGCTGAT 20016 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ======================================= ================== 26 33 99.7 34 GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Left flank : GCAGATGATTTCGGATTCACTGTGCGGACAGCGCTGGGCGAGCAAAGCGAGTGTTGTTTTCTATTGGTCGCTGGTAGCCTATCGTTGCGAGTGGCGATATGGGATTCGAGCGCATCGAGTGGCATTGATCGATGTGGGACATGTTGGACAGAATTTATATCTGGGCTGCGCCGCGCTAAATTTAGGGATTTGCGGGATTGCGGCGTTTGATGATAAAGTTTGCAGTGACATTTTTGGATTGGATAAAGATGAGGAATTTATTATTTATACTGCACCTGTAGGAACGCTTAGTTCTGCGGATATTGAGAAAGAAAAAGGTTTCTATCGATTTGTGGAAGAAGAAGGTCTTTAAGTGCGAACGTGAAGTGAACATAGAAATCCTGGGAGGTTCGCACCGGGAAAATGTGAAAATTAAAGAAAATATTGCAAGTGTATCCAAGATTGTTTATCATAGAATCGAAATAGGAAACAAATAGAAGTCATTAAGTTTCTTATTTGCT # Right flank : TATAAATATCAGTTTCTGAGCACAAGCAGCGTATGAATTAAAACTTTTTCAAATTATGTGAATTAATTAGATTGAACAAAAAAAGTCTCGCTTAAGAATAAGTAATTTGCTCCAACACAGAATGTTTTATTGGAAAACTCATGTCAAATATTGTATCGGTTATTATTAAGTTGCTCCGTTAATCTGCTTTACAAAAAAGTAAATCAATAACTTAAAAAATCAAAACTCCGACGACCATGAAACCAACACGATTGTCTATATTCAACACCGTTATTCATAAAAACTCAAAACATCGACCAAAATCACGAAAATAAAAAATTGTACACTTTTCGTACACTTTGAAAACGAAGGCATCAAAAAAGCCCTTAACTAAGGGCTTTATCGTTAACTGGTGCCGATACCCAGAATTGAACTGGGAACTGAGCATTACCATTGCTCCGTTTTACCATTGAACTATATCGGCAGGCATTTAATATAATATCAGTTACTTATAAAAAATG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.20,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 25802-26639 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNPO010000031.1 Holdemania sp. 1001095H_141210_F2 NODE_31_length_37234_cov_50.1657, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 25802 32 100.0 34 ................................ ACCGCTGTCCCACTTAATTTTCTGATCTTTTTTG C [25812] 25869 32 100.0 36 ................................ CTGATACGCTGGTATTAAGCTTGAACATCTCCCTGG C [25879] 25938 32 100.0 34 ................................ GTTGAGATTGTCGATTTCAGACTTTATTTTTTCG C [25948] 26005 32 100.0 35 ................................ CCAGAAGCCTCTGCGGCGCGATTCCACCGAAGACG C [26015] 26073 32 100.0 34 ................................ GTTGAGATTGTCGATTTCAGACTTTATTTTTTCG C [26083] 26140 32 100.0 35 ................................ CCAGAAGCCTCTGCGGCGCGATTCCACCGAAGACG C [26150] 26208 32 100.0 35 ................................ CCTCAGCTGTATACCAACATATGTGAAAATTTCTG C [26218] 26276 32 100.0 34 ................................ CCTGCAGGGTACAAGCATAAAAAAGGTACACTGT C [26286] 26343 32 96.9 35 G............................... TTGGAATGCGGACGATTAACGTCACACAGGGGTAT C [26354] 26411 32 93.8 33 G..............T................ CGGGCTGCTTCGAGCCATTGCAGATCTCCTCCC 26476 32 93.8 33 G..............T................ ACGGATGTAAGTTTCTACCTATAATTCTTTAAA 26541 32 96.9 34 G............................... GATACACTCATAAAAATAATGGACAAAATGAGAG 26607 32 96.9 0 G............................... | C [26618] ========== ====== ====== ====== ================================ ==================================== ================== 13 32 98.3 34 TTCGCATCGCTACGCGGTGCGTGGATTGAAAT # Left flank : GAAGCTGATAATTGTCAGCAGTTAATTGAAAATCCTCAGGCTTTATCTTCGGAAGAAATGGCTATGCGAAAACTTCGCGGGCAGTTATTATTGGACCAGCAAGCTGCCGCTGAAGGATATACAGAGTGTATACAAAGTGAAATTGATTCTTTTATACGTCAGGAATGTCTTATCAATCGAGAAGGAAAATTATCTTTATCCGCTGAAGGATTGGGAACTTTCTGGTTTAGCTTATTGAATGATGCTTATTATTAAAAACTGATAAAGGTCAGGAATGTCTTATTGGAGACAAACCTGGCCTTTTCCTAAAATTAGTAATGAATATTTTCAATAAAAATTGAGGATATTCTGGTGCGAACCAGAAGTGAACATGAAAATCCAGGGAGGTTCGCACCGGAAAGATGTGAAAATTGAAGGAAATATTGCAAGTGTATCCAAGATTGTTTATCATAGAATTGAAATAGGAAACAAGTAAAAGTCATTGAGTTTCTTATTTGCGG # Right flank : TCTCTTTCTTAAATTTATCCATAACCTTAAGACATGTCCCACTGGCAGTGCGTGAATTTTTGCCAATCGTTTTATAACTAGAATTTTATCTCAAGCAATGTATTGATTGTTATGGTATAACGCCGTTTTTTTGTTGTTAATCTAATTGATAGAAGTTGACTTTAGTTAAATCTTATTTTCTGGTAGGAATAATTAGAAAATGGGATATAATATAATTATTAAAGACTGTTGTATTAGGAGGTGTGTTTATGTTATTAGCACACTGGGATGGGGAAGAACAACGAGCACAATCCTTAAAAGATCATAGTGAAAATGTAGCAAGAATGATGGAAGAAAATTGTTTTTCGCTTGGCCTTACATCAACTGGACGATTAATAGGATTACTCCATGATGCAGGGAAAGCCAATCCTGTATTTCAGCAATATATGCTTGAAAATCAAACAGAGAAGAAAGGGAAAATTAATCATTCGGCAGCAGGTGCTCAGATACTAAGGAAACTA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCGCATCGCTACGCGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 35007-36214 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNPO010000031.1 Holdemania sp. 1001095H_141210_F2 NODE_31_length_37234_cov_50.1657, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 35007 35 97.1 33 ..A................................ CTGCCCTGGGGCATACTGATTTTCATTATACAT 35075 35 97.1 34 ..A................................ GGCGAAAATCATGGCTATGTTTGAAGCTATGAAA 35144 35 97.1 36 ..A................................ TTATGTAGAATTTCTGGAAAACCAGAAACGGATCTA 35215 35 100.0 34 ................................... TCCAATATGCTTCAGCTTTGGGATTAACACCAAA 35284 35 100.0 32 ................................... CGATTGTATGGTCGGTGGAGCGGATTTATCGA 35351 35 100.0 34 ................................... GTCCTCTGTAATGACAAGACCATCAAAACGTTTC 35420 35 100.0 35 ................................... AGAATCCAGGATCAAACGGGCTGCAAATATCATTG 35490 35 100.0 33 ................................... ACCTCTTCCGGCTCTGCATTTAATCCGGTTATC 35558 35 100.0 34 ................................... CCCCCACACCAGTAATGACATCGACTGCCATGAC 35627 35 100.0 33 ................................... GGCACTGGCGACGTGATCATTATTTCGGGCACC 35695 35 100.0 35 ................................... CTGTGCGTCATTGTCAAGCAGCAGATAAGCATCTG 35765 35 100.0 34 ................................... CTCTTGAAGCAAACACATTGCATCATATTTATCC 35834 35 100.0 35 ................................... CACTGGTCCGTAAAATCGAATGACAATCTGAATCT 35904 35 100.0 33 ................................... GAAAACTGACTCCTCCAAGTACCGGCCAACCTT 35972 35 100.0 33 ................................... GTCGTACATGATATCGAGTTCTTCTTCAGTAAA 36040 35 100.0 35 ................................... CGACCAAAAAGCAGCACGATCGCACAAAGGAGGAA 36110 35 100.0 35 ................................... AGCCCATCGAACAACCTTAATATTTGTCCCCATAG 36180 35 94.3 0 .................T...A............. | ========== ====== ====== ====== =================================== ==================================== ================== 18 35 99.2 34 GTCGCATCGTTTGCGTACGATGCGTGGATTGAAAT # Left flank : AGGGGAGATTTAGATGCTTATCCGCCATTTATGTGGAAGTAGAGGCAGTTTATGTTGGTTTTAATTACTTATGATGTGAATACGGAGACGAAAGCGGGGCGGACGCGTCTGCGGAAAGTTGCTAAGCAGTGTGTTAATTATGGTCAGCGAGTCCAGAACTCAGTTTTTGAATGTTCTTTGGATAATGCAAAATTAATAGAAGTGCAGCATTTGTTGGAGGGCTTGATTGATAAAAATGTTGATAGTTTGAGATTTTATATTCTCGGCAATAAATATAAAAATAAAGTAATTCACATAGGTGCAAAGCCAAGCTTTGATGTCAATGATCCACTTATCATTTGAATAATAGTTTAGTGCGAACCTGAAGTAAACATAAAATGTCTGGAGTGTTCGCACTTAAAATCAGGCTAAGTTTAATGAAATATCACAAGTTAAATTTAATGAGTTAATTAAGTTCTTAAATAAGAAACTATATTCTATATTTTCGTTTCTTATTTGCG # Right flank : TTTCAGAATACAGGGGTTGCTGTTAGATCTATTCAAATCCTATTATCAGCACCCAATGTAAGGAACAAAACTAAATAGGTTATACCATTTATAAATGTAATGTTGATCAAATCTCGAAGTATACAGGAAGTATGAGACAAATATCTATGAGGTGGAATCTATTGAATATTAAAGATATGATGCGAACCCCCGGATGGCATTTTAAGACTGAATAAACACAGACATCTCCGATCCATTTAGCAATTCCTTGGAAATAGACTCTGATAATTAGTAAACTGTGGTATACTAAAGAAAAAGGAGTGATCCCGATGCAAGCCAAGAATGCCCCGCGCTATCAACAAATCGCAGCGGATATCGCTGCTAAAATTGCCGGCGGCGAATATAAAATAGGAGATAAAATTTTTGCCCGTTCCTCCCTGGCTTCACAATACCACGTTTCCAGTGAAACAGCGCGCCGCGCTATTTGCGTTCTTTGCGATATGAAAATTGTGGAATCCATT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCGTTTGCGTACGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: F [matched GTCGCATCGTTTGCGTACGATGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //