Array 1 256742-257563 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVEA01000001.1 Fusobacterium necrophorum subsp. funduliforme strain LS_1264 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 256742 30 100.0 37 .............................. CCTTGTAAGATTGGTTTTATACTCATAAGAAAAGCGA 256809 30 100.0 37 .............................. GCAGACCAAGCAACTGAAAAAATTGGTTTTTTTACAG 256876 30 100.0 36 .............................. ATTTCTTCTGATAATTCTTTCATAACATCAATTTTT 256942 30 100.0 35 .............................. GCAACTCCTCTAACATCGCCCCTAATTTCACACGA 257007 30 100.0 35 .............................. GAAAAATGGCTTATTTGCAATATAGAAGCATATTT 257072 30 100.0 37 .............................. TATGGAATAACAGTGATCCGTTTTTAATTAATGATAC 257139 30 100.0 37 .............................. GCAGACCAAGCAACTGAAAAAATTGGTTTTTTTACAG 257206 30 100.0 36 .............................. ATTTCTTCTGATAATTCTTTCATAACATCAATTTTT 257272 30 100.0 36 .............................. AACTCAGGAAATCAACGTCAGGAACTAAACGGAAAA 257338 30 100.0 35 .............................. GCAACTCCTCTAACATCGCCCCTAATTTCACACGA 257403 30 100.0 35 .............................. GAAAAATGGCTTATTTGCAATATAGAAGCATATTT 257468 30 100.0 37 .............................. TTTTATAGTTTACATAACTATTATCTAAGTCACTAAA 257535 29 93.3 0 .......................-.....T | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 99.5 36 GACTAAATCCAAGTAGATTGGAATTTTAAC # Left flank : AAAAATTTAGATACTGTGAAGAAAAATTATTGAATCTTTCTTTTTATAATCATCAAGATAAAAAGAAAGAGGAAAGTATAAGAGTATTTCTTATAAGAGATAAAAATAGTGATAATTTTAAATTTGAATCAATATTAGACGATGGCAGTAATAAGATATTTATTTCTAAAAATGGAAAAGAAATTACAATACAATGTTGTGATAAAGTATTAGAAACTTTAATAATAGAAAAAAATACTTTAAAGATAAGTTCAAATGGAAAAATTATTTCTTTAATTCCTCATTATTCTTACTCTATTGATGTAAAGTATTAAAAAAATTTTTTGTCGACCTTTCATAGTGTAAAATTTATGCTAGGTCGACAAGAGTATAAAAGCATAATATTATGCTTTTTTCTATAATTGAAGTTGTATTTGAGGCATTATTTTGATATAATTTTATTCATATAGACAATAAGGCTATTATAAATATTTCAAAATATTAGAGTAATAGTAACACTA # Right flank : TATTGTTAATAAAAATCTTTAGAAAATAACTTTAAATAATAGATTTTTTTTATTCAAAACTTGAAATAAGATTTACATAAAAGCTTAAAAAGGGAGATTCCATTCTCTCTTTTTTCATAATTTCTTTCTTTTTTATATAAAGTTTGCTATACTGAAGGTGAAAACTCGTGAAAGGAAAGAAAGCATGGAAAAAGAAAAAATCAAGGAAATGTTGGAAGAACGCTTTCAAGTAATTCCTGCATACCCTAGAAAACGACATATTCTTTTTTGGTATGATGGACAGAAAGCATTTCAAGATATTATAGAGGAATTACAGCTTGATAAAGTAAAAATCCTTCGTTTGCAAAAAGGAGTCAATCGAAATGGAGAAGAAATTGATACCAATCTTTTTAAAATAAAATATACTTTGGAGATTTTGGATACGGATTCTCATTATTTAATTTATAGTGCTAATCCAAGACCCTCTAAGCATGAAAATTATCTCTTAGATATAGAAAGCT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACTAAATCCAAGTAGATTGGAATTTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-88.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 250161-251253 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVEA01000031.1 Fusobacterium necrophorum subsp. funduliforme strain LS_1264 contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 250161 30 100.0 37 .............................. CTGGATTATAGATTTAACAGGATGATGGATGGAAAAA 250228 30 100.0 34 .............................. GCAGGAAGAATTCATCATATGATAGTCCATCAAC 250292 30 100.0 38 .............................. TTCCTTCGTGTCCGATGTTTGTATTTCGTCTTGAAGTT 250360 30 100.0 36 .............................. TGATTTTTTGCTTGCAATCTAAAAAAATATTGTATA 250426 30 100.0 37 .............................. GTCAAAAGAGAGAATAAGAAAGAAAAGAAGAAGCTAT 250493 30 100.0 37 .............................. AACTTTGAAACGGTTTTGAGTTCAATTTCTGAAAAAG 250560 30 100.0 35 .............................. AATGTAAAAAAAGATTTTTACAAGCACGAGTATAG 250625 30 100.0 37 .............................. TTTTCCCTCCTAGATGTTTCTTTTCATTTTTTCAAAA 250692 30 100.0 36 .............................. TTGCATCTGTCGAGGCGGCTAGAATTATGAAGCGTT 250758 30 100.0 35 .............................. TCACATTCACAGTCGCTTGATTGACTGCTGTGGGC 250823 30 100.0 36 .............................. TTTTTTCCCTCTCTTGCAGCCATTCTTTGATTAGAA 250889 30 100.0 38 .............................. TCAATTTTTTCTTGATGGTTAGAGCAATACTTATAACC 250957 30 100.0 37 .............................. TTTTCCCTCCTAGATGTTTCTTTTCATTTTTTCAAAA 251024 30 100.0 36 .............................. TTTAAACTTCCAAACTTCTCTCCCTCATTTAACAAA 251090 30 96.7 36 ...............A.............. TTTAACATCCCAATACTTCTTCCGCCGTCTTGTAGA 251156 30 96.7 37 ........................A..... TTTCTTACTATCTGGAAACATGCTATTTTTTCAACAA 251223 30 73.3 0 ..C........TT....A.TT...TA.... | T [251245] ========== ====== ====== ====== ============================== ====================================== ================== 17 30 98.0 36 ATTAGAGTATTACTAGAGTAGAATGTAAAT # Left flank : TTCCAAATGTGGTGGTGATAAAATATGTATGTAGTAGTTGTATATGATATCTCTTTAGATGAGAAAGGGACTTATCATTGGAAAAAAATTTTTCAAATTTGCAAACGATATTTGCATCATATTCAAAACTCTGTGTTTGAAGGAGAACTATCGGAAGTGGATATTGAGAGATTAAAATATGAAGTATCTAATTATATTAGAGATAATCTAGATTCTTTTATTATTTTTAAATCTCGGAATGAGAGATGGATGGAAAAAGAAATGTTAGGAATACAAGAAGACAAAACAGATAATTTTCTGTAGATATTTTCATTGTCGACCTCTCATAAGGTAAAAATCTCAGGACATTGACAAAAGAATAAAAGAACTTGATTTTCCAAGAAAAAAAGTAAAGATAGAAAAATAAAAAAGGGTTTTCTCTTAATTTTTTTTATAAAATAACTTTATCGACAATTATAGTCAAAAAAAGTTATAGATAGCAATGTATTTTAAAGTCTCGT # Right flank : TTTGAACTATAACTAAAAAAGAGGTAAAAATGTTATGTTGGATTAAAAATTTGCAATATATGGGTTCATTATTGAAGATTGTTTGAGAGTTTCTTTTGAATTAAAAAAAGGGAGCTTTCATTGTAAGAGAATACGTAAGGATATGGTACACATAATCAGGTTACTGGAACTTCGTCCGACGACATCACCGTGATGTTGACAACTTTAGATTCCTTAAAACAAAGTGAAAGAGAAATTAATATGGAAGATATGAAAAAAAGATTTAGTAATTGTACAAATGACGAGATTGACAAGAGTTCAGAAATTACACATGTTCACTCTATTTCAAAAGAAGCTTGCAGAATTTATGTGGAAATAGTGAAAAGTCTGATTATAAATAAAAATTTAAAAGACATCTTAGAGAATTTGGAATGTACAAAAAATTTTCAAGATTAAAACATCTCGATACTTTGTAGGAAGAGCAATATATTATGAACGCTTTAGGAGGTAGTTTGTGATGT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAGTATTACTAGAGTAGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //