Array 1 279193-275383 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCWR01000001.1 Hydrogenophaga taeniospiralis CCUG 15921 strain NBRC 102512, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 279192 29 100.0 32 ............................. CCTTCCCACACCACGCGCTCAATCTGCAGAAA 279131 29 96.6 32 ............................G TGCATTCAGTGGCTGGTGGATCGCGAGGTTCG 279070 29 100.0 32 ............................. ACACGTTCAGCGATGTAGATCGTCCCGTTCTC 279009 29 100.0 32 ............................. TTCGCCAAGTCCCTGGTCAACACCTTCAAAAC 278948 29 100.0 32 ............................. CCGTGCAGCTCGTAAAGCTGTGTCAACGATCT 278887 29 100.0 32 ............................. TCGCCGGCACTCGCGCCCACCAGGGCAGCGCC 278826 29 100.0 32 ............................. TCATCGGCAATTTCAATGCACTCCTGTAAATT 278765 29 100.0 32 ............................. TTCCGGTGCTCCTTCTGGCCGTAGGTCTTCCA 278704 29 100.0 32 ............................. CACCAGCCAGGGCCGTCCTCGCTGGGGTCTGA 278643 29 96.6 32 ............................G CTGCCGAAAAGCAGCAACCGCACGACGCTGAA 278582 29 100.0 32 ............................. TCGTTGGCGGGTTCCCGGCGCACACCACACGC 278521 29 100.0 32 ............................. CCACAAGGATTGACCCATGTCTTCGGAAATCA 278460 29 100.0 32 ............................. CAGAGCACCGAGAAGATCGTTGGCGCGCTTGA 278399 29 100.0 32 ............................. ATGCAGCCGATGACGGATGGAGCTTTGACCGC 278338 29 100.0 32 ............................. GCGTGGTCAGGCGGCACCTTTGGCGCGTTCGT 278277 29 100.0 32 ............................. CAAGGGCAACGTGATCAACATCAGCCGCCAGT 278216 29 100.0 32 ............................. CCACCCAGACCGATGCGCGCCTGGTTGCTGGG 278155 29 100.0 32 ............................. ACCAGCTCCAGCGGCGCACGCGCGTCGGGCCG 278094 29 100.0 32 ............................. CCGGGCGCGATGGCCAACAGCTCCAGCAGCGC 278033 29 100.0 32 ............................. AAACAGCCTCGCCACGCCGGACACCCTGTTGG 277972 29 96.6 32 ............................G CTGACGTGTGGATCCACGCCGCTTCTCAAAGG 277911 29 96.6 32 ............................G TTTCGAAAAGAGCTTTCGGCCATGGGTATCGT 277850 29 100.0 32 ............................. AGCTCCAGCAGCGCCCAGAACACAACCCCGGC 277789 29 100.0 31 ............................. GTTCTTCCAAATGATTGCCAGGTTGTCCACG 277729 29 100.0 32 ............................. GACCGAGGGAACTGCTGCTGCAGTTCGTCATG 277668 29 100.0 32 ............................. CTCGACCCGCACGGTCATGAGCTTGTAGGCGT 277607 29 100.0 32 ............................. GGGCGACGCTTTTACTTCGCGGTGGTGTACGA 277546 29 100.0 32 ............................. TCACGTCGGCCCGCCTGGGAAACTGACCGAGG 277485 29 100.0 32 ............................. TGTGAGGCGCCGGAGTGGAAGACGGCCACGAC 277424 29 100.0 32 ............................. CTCTACAACAAGGGCTACACGCGCGCCGCGCT 277363 29 100.0 32 ............................. CCGCTTTCCTGCAGCCCGATGGCCAGCAGCAT 277302 29 100.0 32 ............................. CATCGAGCGACGCCTTGCATGGGCCATCAGCG 277241 29 100.0 32 ............................. ACGCGGCCAGTGTCAAAGCAGCGGTCGGCGTG 277180 29 100.0 32 ............................. TCAGCACGAGGCGCCAGGTACAGCGTGGTGCA 277119 29 100.0 32 ............................. ACGTCGTAGAGGGCAGCTGCGTTGCTGGCCGA 277058 29 100.0 32 ............................. TCGACACCGCTAAGACCAAGACCATCGAAGCC 276997 29 100.0 32 ............................. ATTGCAAAACGTGCGCAAGAACTTCTAGCTGA 276936 29 100.0 32 ............................. GGGTGCGGGATCGAACCGCAATGCCGTTTACG 276875 29 100.0 32 ............................. TGGATGATCTCGTCCCCGAGCACAGCAGGATT 276814 29 100.0 32 ............................. GTCATGTGCACCGGGAAGCGCGTGTGCATCGC 276753 29 100.0 32 ............................. TCTCGCGCACGCCATCGACGGACTTCCGCAGG 276692 29 96.6 32 ............................G TACATGGCGTCGGCCTGGGCGGTGCGCGTGCT 276631 29 100.0 32 ............................. ATGTTCAAGACCTACGTGGCGCGCGAGATCGC 276570 29 100.0 32 ............................. TCGGCGGGCGCCGCTGCCGCGATCAACGTTCG 276509 29 96.6 32 ............................G TATGGCTTCCTGTTGTCGAATGGGAAGGTTTA 276448 29 96.6 32 ............................A CGGCATGGTTCCGCGACCAATTCGGGCAAGCA 276387 29 100.0 32 ............................. TTGTAGGCCTCAACCGAGCCGCAGTTGCTGAA 276326 29 100.0 32 ............................. TCACTATCGTGCTTCGGACGGCCAGAAACGCA 276265 29 100.0 32 ............................. GAAATAGGTGAAGTGGTACACGTTGGCCGTGG 276204 29 100.0 32 ............................. TTGATGCCGCGCTCATCCTTGTCCGTCACGGG 276143 29 100.0 32 ............................. TCTGGCTCTGCGCAAATTGTCAACGGCATTTG 276082 29 100.0 32 ............................. CAATCGAAGGTGCCGCCACCCATGTCCAGCAC 276021 29 100.0 32 ............................. AAGCAGGTCAGCGGCACCGCGAAGATTGACCC 275960 29 100.0 32 ............................. GTAGAGCGGCGGGACAGCGATCCCCACGCACA 275899 29 93.1 32 ........A...T................ ATCGTCGCCACCGCCATCGAGTTCGTGGCCGA 275838 29 100.0 32 ............................. CTGCAGATGAGCCTGAACCCGGACGCCGGCAA 275777 29 100.0 32 ............................. AAGTGCACCCAGCCCGATGGCTCGGCGGCCTT 275716 29 96.6 32 ..................A.......... GTCGATCCAGTCGGACTTCATGCAGACGTGAC 275655 29 100.0 32 ............................. CAGCGGTAATCCCGCCCATGGTCCGCGCGTTC 275594 28 96.6 32 .................-........... TGCTGCGATGCAAACGGCAAATGCACCGGTGG 275534 29 96.6 33 .........................A... GAATGGGCGGGCGAAGAGGTGATCGCCTTCGAC 275472 29 93.1 32 .......................C....T AACTCGGGCAATAACACCGGGTCTTTTCAGGC 275411 29 75.9 0 .A..C........A.........CAC..G | ========== ====== ====== ====== ============================= ================================= ================== 63 29 98.9 32 GGTTTCCCCGCGCGAGCGGGGATAGGCCC # Left flank : CAGGTGACCAAGGGTGCGGAAGATACGGTGGACCGTTTGGTGCGCCGTGAGGCAGCCCAGGTGTTTCGCAAACAGCAAGTCATCCCGTCGATGATCGACAAGATCAAGCAGGTTCTGCGCATGGAGGAGGTCGATGGCGCTGGTGATGATCGTGACGCGTGATGTTGCAGACCGGTTCCACGGTTTTCTTGCCTCGGTCATGCTGGAGGTTGCACCCAATGTGTTTGTCGCACCGCGGATGAACAAGGGTGTGCGTGAACGCACATGGGGTGTTGTTTCCGATTGGTATGACCAAGAACCAAGAGGCAGTCTGGTGATGGTCTGGCGTGATCTGAATGAGGTGGGCGGCATTGGCTTGGCTCATCTTGGAACACCACCCCGCGAGTTGGTCGAGATGGACGGAATGTGGTTGACCCGACGCGGCAAGTCTGAAAACGCTCTTTAAAATTTTGAATGGATTTCATTGTTTTCTCTTACACCTCAACAAGTTAGGTGTGAGA # Right flank : AGATTAGAAATACAAGTGCTGTTTGTCCGTAGATGTCTCCCTCGAACAAGCAAGAACTTCACCCCAATGTCAGACTCCGACCCATTCCCCTAACAACCCAAGGAGACAACCCATGCTCAACGACAACCAGACCCAGGACCTCCAGGCCTTGCTGCCGGGCCAGTCCACCGAACTTGGCGCCACGCGGCGCACCGCCCTCAAGGCCGCCCTGGGCGTGGGCTACGCCGCGGCGACCATGCCCATCATGGCGCAGACGGCGATCAAGACGCCGGCCGACGGCCTGACGGCGGGCGAGGTGACGATCGACGTGAACGGTTTCAAGATGCCGGCCTACCGCGCCGCGCCCGCGGGCAAAACGGGCTTGCCGGTGGTGCTGGTGCTGTCCGAGATTTTTGGGGTGCACGAGTACATCGCCGACACGGCGCGGCGCTTTGCCCAGGCCGGGTATCTGGCGATCGCGCCCGAGCTGTTCGTGCGCCAGGGCGACGCTCAGAGCTACG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTCCCCGCGCGAGCGGGGATAGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //