Array 1 14489-13322 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAPY01000022.1 Acinetobacter soli TCM341 contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 14488 28 100.0 32 ............................ TTATTAACAGGACTATCTTTAAGTCTAGTTTT 14428 28 100.0 32 ............................ ATCGGCATTTGTTGTTGTGACTGTTACTGAAC 14368 28 100.0 32 ............................ TGTGCTTCTTGATGTGTCAAAAACCTTATTCT 14308 28 100.0 32 ............................ TTTTTCTGAGGATCAGGCATAAGTAGATCGAG 14248 28 100.0 32 ............................ TCATTACAAATACGTGCTTTATGTTCCTTGTT 14188 28 100.0 32 ............................ TACATATCAAGCACTTGAATCGGGTAAAACAA 14128 28 100.0 32 ............................ ATTTGATATTCCTTTTAAAATCATTTCATTTT 14068 28 100.0 32 ............................ AGCGCGGCATCGTCATCCTTAAAAACCGGTTT 14008 28 100.0 32 ............................ TTAAAGACGTATCACAAGAAGACTGTAAGCGC 13948 28 100.0 32 ............................ GTATGTACAGAAGATAGATGCATCTGCTTCAA 13888 28 100.0 32 ............................ ATTCCTGTTGTTTCCCAAGCGCCTGAGCCTTT 13828 28 100.0 32 ............................ GATGAGGAAGAGCCGGACGTCATTCAGGATGA 13768 28 100.0 32 ............................ TGAGTAGATTTTTGTTAACATGACAACAAAAT 13708 28 100.0 32 ............................ AACTGCTGCTCAAGTCGCTAAAACACTTGGAA 13648 28 100.0 32 ............................ CATACCTGTGATGTCTACGCCAATATAAGTCA 13588 28 96.4 32 ....................T....... ATTAAATGAACCTGAAACATATCCTGAGCCAC 13528 28 100.0 32 ............................ CATACCTGTGATGTCTACGCCAATATAAGTCA 13468 28 100.0 32 ............................ ATTAAATGAACCTGAAACATATCCTGAGCCAC 13408 28 100.0 32 ............................ AGACAGCTTACCTTTCACCACTGCTGCAATGA 13348 27 89.3 0 .......................T-..T | ========== ====== ====== ====== ============================ ================================ ================== 20 28 99.3 32 CTTCACTACCGCACAGGTAGCTTAGAAA # Left flank : CCGATATCGGCAGGTGTAAATGCGATTTGACGTTGCAAATTACTGGTTTCAATGGTGTCGGCATCAATCAGCGTGATTTTGCCTACGCCTGCTCGAGCCAGCAGCTCTGCTGTTGTACAACCGATTCCACCCGCGCCTACTATCAAAACATTGGCGAACTTTAGTTTTTCTTGAGCATCTAAATCCCATCCATCGAGTAAAATTTGTCTGCTATATAAATGCATTTCGGCATCATTTAGCTCTAAATCCAGATTGTCCTGATTGTTCACTCGTGATTATCCCAATTTATCAATACCAAATTCATCGCCATGATTATAAAGACAAGCTTGTGTTGTGAGATGTTTTATTTTGACAAAAGTGAACTTTTACCCCAATATTTTACTTACTCTTTAACAGTTAAATAAAATCAAAAACTTAGTTAGAGCTAAAATAAAATAGGTATTTTTATTTTATTTGCTTTAGTATATTGTTTTTAATATATATTTTTATATTTTATTACT # Right flank : ATATTTTGATCAATCATTTGAAGCATATTAATATAGTCACTCAAACTATCAATCAAATATTACTTTGCTGATTCATATCAGCTTTTACTGACGATAGATAAGAAAATTTTGAGTAAAAGAAATGACTGCATGGCAACAACTTGGAATAGAACCTACTACAAATTTAAGAGCAATTAAGAAAGCATACGCTATAAAGCTCAAACAAATTGATCAAGACACTCAGCCAGATCAGTTTATTTCATTGAGAGAGGCCCTTCAAACTGCCCAATATGAAGCGCAGTATGAATTGTTTGATCAAGAAGACATTAATAATTCTATTTTTAATCATGAACAACACACATATCATTTAATTGAGCAAACTGAATCTGTTCAAGAAATCGAAATTAATCAATCATCAGATAACGAGCTTGAAGAAATTTATCTTGCAATTCAGCAGCGTATCATCGAGCAAGATATTCACTTTAATATTCGAGAAGCATTGCACCAATTTGGTGATCATC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTACCGCACAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTACCGCACAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [78.3-91.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5112-5559 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAPY01000004.1 Acinetobacter soli TCM341 contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5112 28 96.4 32 ...........................T TGACAAACCAAAGGCATCCAAGTACATGCAGC 5172 28 100.0 32 ............................ GAGGTTTTTGGCTTCTTGGCTACGAGCAACTG 5232 28 100.0 32 ............................ ATGAACAAGCTCATCGAAATATAAACCCCCTT 5292 28 100.0 32 ............................ AACACTAAAACGGCTACAGTTAGAAGTGTTTA 5352 28 100.0 32 ............................ ACATACTAATCTGAATACACCGCCTGCGCTAC 5412 28 100.0 32 ............................ AATGCCAGTGTGCAAATAGACTTTGATTTGAA 5472 28 100.0 32 ............................ TTAATGATTGAAATTGAAATGGGGTTATTGGT 5532 28 92.9 0 ............G...........T... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 98.7 32 GTTTGTCATCGTATAGATGATTTAGAAA # Left flank : CTTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAGTCAGTGGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAAGGTAAATCAAGTGCTTGTTGCTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCATTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATTAAAGTGTTGAAGCAGAGATCTGCGACAAATTAAGTCGTAGATACAATTGAAGGGAAATATTATATGTTCTATATATTTAGTCTAAGATGATTAGGTTGTATTTTTGAAAATCTGGAAAATTAATATAATTCAATAGATTATATCGTTATTCTTTTTTTAAGGTTTTTTGATTCATTAAAACTTTATATTATTGTTTTAAGAGTTTTATTTTGCTTGAACTTTA # Right flank : AAGTCCATCCAATGCTTAAGGCGACATATTTTGTCGTTAGAAAACAGTATTAAGCTGATCAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTACTATATTTAAAATTAAACCATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGACATTTGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGCGCATTAAAAAAGGTAGCCACCCGACAAACTGCTGTAGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTTGGAGCAAAACATAAATTTGCCCATAACGGTGCATATCCAGTTGCATCAACTAAAAAACAGCAAAAACTACTGATGCTAGATGAATGGGTCAAAGCAAGTAGCTTGTTGGCGGGTGCAGCAGGAGACATGCATGATATTGGTAAGGCAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTCATCGTATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: F [matched GTTTGTCATCGTATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 57-1464 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAPY01000042.1 Acinetobacter soli TCM341 contig_42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 57 28 96.4 32 ...T........................ ACTCACTTGCAATTTCTTTAAATGATATTGGC 117 28 100.0 32 ............................ AGAGGGCAAAGCCGCGCTTGATGTGATTTACT 177 28 100.0 32 ............................ GGCTGCGGAAGATACCAATCCGGCTGCGGAAG 237 28 100.0 32 ............................ ACAAACTGGCCGAAGGTGTGGCCGACATGCTC 297 28 100.0 32 ............................ AATCCTCTAAAACCCGTTTACGCGCAGCTTCT 357 28 96.4 32 ...T........................ AAACTCGGCAGATACTTCATCCAGAGTAATAG 417 28 96.4 32 ...T........................ ATCGGTGGTGTCACCAGCCACGGCAACTCGAA 477 28 100.0 32 ............................ AACATATCTAAGACCAGGCGCTCAAAACCATC 537 28 100.0 32 ............................ CATAAATAAGTGTAACTTTTAGTTTGAGGAAA 597 28 100.0 32 ............................ GTAGTCGAGTGTATCGTTGGCGGACTGATTGT 657 28 100.0 32 ............................ GTCATAATCTTTTTGCACACCAAACGTGTATG 717 28 96.4 32 ...T........................ AACAAATCTATTTGAATTAATCAAGTTTCAAC 777 28 100.0 32 ............................ GCAGGGCGCGAACACTTTATTATTGGCATTTT 837 28 100.0 32 ............................ TTAACGCGAACAATGCCACCAAATCGAATAGA 897 28 96.4 32 ...T........................ CGAAGGTATGGGGCACTTATGATAAGTACAGT 957 28 96.4 32 ...T........................ TTAGTCGATCTGCTTCGGTTCTGGCATTCTTC 1017 28 100.0 32 ............................ TGACCGTATCTTTTTAACAGAGCTACGAGGTG 1077 28 100.0 32 ............................ TAAAGATTTAATACCTTCTGATGCTTTATCTA 1137 28 100.0 32 ............................ TGTTGTGTATAAGCTAAATATTTACCGTTTTT 1197 28 100.0 32 ............................ GTTATAGTTGTTCCGACCACATAACCGAATTG 1257 28 96.4 32 .............C.............. AAAGATGAAGACAAGCAAACTCAAGCTGACAA 1317 28 100.0 32 ............................ AGCGGGAGTGCTTCATTTTTGGGATTTGTAGC 1377 28 100.0 32 ............................ TTCACCTGAACGTCGTGCATATAAGCATTCAC 1437 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 24 28 99.0 32 GTTCGTCATCGCATAGATGATTTAGAAA # Left flank : GTCATCGCATAGATGATTTAGAAAATTTAGCTAATTCTGTTCCATGCTTAGACCATG # Right flank : AGGCTAAAAATACCCCTCCTCACATGGTATTTTCCTGCACCAAACTATTCATATAAGCCACGGCTGCTGTACGGTTTTCTACACAGAGTTTTTCAAAAATATGCTCAAGATGCTTATTTACAGTTCTTGGGCTGAGCTCTAATATCTCGGCAATATCTTTATTGGTTTTACCCAATGCCAGCCAATGCGAAACTTCCGCCTCTCGCTGGGTCAGTTGCGGGCAATATTTTAAAATCTCCTCAACGCCCAAAGCCGGAGCAGACATTTTAATTTGCACCAGATAAGTTGCGTGACCCACGGGTTGATCGTGCCATGGCGTAAGTAAAATAAGTTGCAGTTGATGTGATGCACTAGAATAGGTGCAACTCATTATCTTTTTATTGTCTTTATCGCGTTTAATTTCGGCAAACCACTGTGTTAAACCAGTTTCAAAGCGTTCACGATCTTGCAAATACTGGTTCAGCAAAATATTGGCTTTTTCTGTGGTCCATGCAATTTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCATAGATGATTTAGAAA # Alternate repeat : GTTTGTCATCGCATAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //