Array 1 9-1032 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAF01000148.1 Fusobacterium necrophorum DAB contig0149, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 9 30 100.0 37 .............................. TTGAACGATACTAGGAGTTTTTAAACAACATAAGTTA 76 30 100.0 36 .............................. CTAATTTCTGTAATCGTAGTAATTCTACTTGTAAGA 142 30 100.0 36 .............................. TGTTTTTTAAAAAGTATCAAAAACAGCATTTACAAT 208 30 100.0 37 .............................. GCTTTAAAAATCTACATTGATGAGCTAATGTCGAAAA 275 30 100.0 37 .............................. AGTATGTCGTTTCTGCTGAATAATTCTTTGTGTGTGT 342 30 100.0 36 .............................. AGAGCTGATAAATTATCTGTAATCATATCTGATGTT 408 30 100.0 36 .............................. TATCTAACACGGCACAAAAAAAAGCAGCAGGGTCGT 474 30 100.0 35 .............................. CTCTCTCATGTTGCCGTTTTTCCCAATATCCTTTA 539 30 100.0 36 .............................. CGAATTGATGACCTTCACTCGGGATAAACGCCGTCC 605 30 100.0 37 .............................. CTCTGAGAATGATTGTAAACATCATGAAGTATCCGCA 672 30 100.0 36 .............................. CGACTAATCGTCTGTCAATCTTTACTCCAAAAGCAT 738 30 100.0 37 .............................. CTGTATCAATTAGATTTTTTAAAGATTCAATGCTAAT 805 30 100.0 35 .............................. GTCAGTAAAAATAACTGGACTTATAAAAGATTTTT 870 30 100.0 36 .............................. TAGACACTTGTTTTGCATTGTTGATGAATCTGCGTT 936 30 100.0 37 .............................. CAAAAACGAGGCGAGTGCCTTGCAGGATTTAGGTGTA 1003 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 16 30 100.0 36 ATTAGAGTATTACTAGAGTAGAATGTAAAT # Left flank : AAGATTGAA # Right flank : TATGCATCGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAGTATTACTAGAGTAGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [10.0-8.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 18880-18057 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAF01000157.1 Fusobacterium necrophorum DAB contig0158, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 18879 30 100.0 35 .............................. ACATATAAACCAATGTGCAATAATTTAAGAAAACT 18814 30 100.0 35 .............................. TTTAATTCAAATAAATCTCCTTTATATTTTTTAAA 18749 30 100.0 36 .............................. GGGAATAGTAACAGTGAATACTCCTACTTTTGTGGT 18683 30 100.0 37 .............................. TTAAATGAAACAAACTTTCAATCACCGGAGCTAACAA 18616 30 100.0 36 .............................. AATTACTTTTGCAAACAGCCATCCTCTTGCATCTCT 18550 30 100.0 37 .............................. AACAGAACTCTTGCAGATAAGATTTTTCTTTTCATTA 18483 30 100.0 36 .............................. TACCACATCTAAAGCATTCCATACCTCATCTTCCTG 18417 30 100.0 36 .............................. AAAAGGTTCTCATAAAAGATTTTATAATCAGAGTAC 18351 30 100.0 37 .............................. CTGTGCCATTGAGTATTTAATCTAATTGCTGCTCATC 18284 30 100.0 36 .............................. TTATATCGGGACATGGCTTTATGATGATTTTATCTC 18218 30 100.0 37 .............................. TTTCCAATTCCGATTGCGGTTCTTTTTTAACGATTGC 18151 30 96.7 35 .............................G CAGCTTACTCTATGTATCATCAAATAAGCATTGCT 18086 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 99.7 36 ATTTACATTCTACTCTAGTAATACTCTAAT # Left flank : CCATCACA # Right flank : CGAGACTTTAAAATACATTGCTATCTATAACTTTTTTTGACTATAATTGTCGATAAAGTTATTTTATAAAAAAAATTAAGAGAAAACCCTTTTTTATTTTTCTATCTTTACTTTTTTTCTTGGAAAATCAAGTTCTTTTATTCTTTTGTCAATGTCCTGAGATTTTTACCTTATGAGAGGTCGACAATGAAAATATCTACAGAAAATTATCTGTTTTGTCTTCTTGTATTCCTAACATTTCTTTTTCCATCCATCTCTCATTCCGAGATTTAAAAATAATAAAAGAATCTAGATTATCTCTAATATAATTAGATACTTCATATTTTAATCTCTCAATATCCACTTCCGATAGTTCTCCTTCAAACACAGAGTTTTGAATATGATGCAAATATCGTTTGCAAATTTGAAAAATTTTTTTCCAATGATAAGTCCCTTTCTCATCTAAAGAGATATCATATACAACTACTACATACATATTTTATCACCACCACATTTGGAAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCTACTCTAGTAATACTCTAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 751-351 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAF01000184.1 Fusobacterium necrophorum DAB contig0186, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 750 37 100.0 34 ..................................... CGAGGCGGGCAACTGTTGTTCGACTTTTTCCAAG 679 37 97.3 34 .................T................... AGCCATTTAAGCCCCCTCTCTCAAGTCGTTATTC 608 37 100.0 36 ..................................... ATAGACCCCAGCGTTGTCATAGACCTTAGCGTTGTC 535 37 97.3 35 ..........................G.......... ACTAGCAAGAAAAACTAATATCAATCGTTTAACTC 463 37 100.0 35 ..................................... TCAAAGACTACATCAGCCATATACTCCCCCCTTCA 391 36 83.8 0 .................T.......A....A-...GT | CG,C,CC [357,361,365] ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 96.4 35 ATTAAAGAGAATATCCAGCATTAATGAGGATTGAAAC # Left flank : CTGTTTTATAAATTTTCGTTGA # Right flank : TCGCCCACCTCTATAGGTAGTGTGATGAATTGCCCTATTGTTTTTTAGAGAACAAAGAAATATACTGTAATCAGTAGATATATAAAAATAGGAGTAAAACTAATGGAATTAGATAGTAATTGTCATTCAATATATAAGAAAATATCTTTGGAAAGAAATGTTTTGGTCTAAAAGTTTTTGTTTGTTGACTACTGGGGGGAGCTCCTATGGAAGTCATTAAAAAATATAGAGAAGAACAAGAACAAAAGAAGAAATCATTTTGAGGGAGGTGGACGGGTGAGACAACTAAAAGCATATAAATTTAGAATGTATCCAAGCGAAGAACAAAAGATATTTTTTAATAAAACGTTC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAGAGAATATCCAGCATTAATGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.80,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 9-1239 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAF01000020.1 Fusobacterium necrophorum DAB contig0020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 9 30 100.0 38 .............................. TTTGGGATAAATGGGCATGGAGAATTACAAAACAAAAT 77 30 100.0 36 .............................. CGCCAAAAAACTTTTTCGATGCATTAGACAAAGAAT 143 30 100.0 38 .............................. GTTTTAGCAGAAGCATTAGTAAAAGCAAATTTTAATTA 211 30 100.0 36 .............................. GAAATCTGCTCTTTTAAACTTAGTCTTGCTTCCGCT 277 30 100.0 35 .............................. TTCATTTTCCTTTAATTTAATATCAAGATTAGAAA 342 30 100.0 38 .............................. ATGTGCAACAATTTGAGAAACCTTGGATATACAGTTGT 410 30 100.0 36 .............................. GTCAAGCATAAGCAAATAAATATCAAATGCAGTAAG 476 30 100.0 38 .............................. TTGCTATTATATATGTTAAAGATTCGAGGAAATCAATT 544 30 100.0 38 .............................. AGAATCTTCTTCCTCAAACAATAATTGATATAGAATAT 612 30 100.0 37 .............................. GATCCATTCATTGAAAAGGTCTTTCAATCTTTCCTCA 679 30 100.0 36 .............................. GTAGAAGCGGAAGTCGTGACAGAAGAAAAGGCAGCA 745 30 100.0 37 .............................. TTTTTCGCTCCCCAAGCCGCAATATCATATTCTTTTA 812 30 100.0 37 .............................. CTTTCATCAAGAAAGAGAACTCTTTATCCCGGAGTTC 879 30 100.0 35 .............................. TACTAAAGAGTTAAAGAAAGGAATGGAACAAGCAA 944 30 100.0 36 .............................. GTAGCTTGTACTGCTTTATCAGAAACTTGTATGAGT 1010 30 100.0 35 .............................. TATGACAGTAAAAACATATCGTCTATCCTGTCCGG 1075 30 100.0 37 .............................. AGATAGTCAATAAACAGTGTTTCTAAACGTTCTACAC 1142 30 100.0 38 .............................. AAAGGTCGGTATATAGTAGGGTATCAAGATGGAGAAAT 1210 30 93.3 0 ......................G..C.... | ========== ====== ====== ====== ============================== ====================================== ================== 19 30 99.6 37 ATTAGAGTATTACTAGAGTAGAATGTAAAT # Left flank : AAGATTGAA # Right flank : TGTTAAAAATTCTTAGATGAAGAAATCAGGAAAAATGAATGATTTATTGAGATAAATGTAATATAATCTCTTAAAAAATAAATTCATGTATAAAATTTCAAAAAAGTATATTTTTATGAATTATCGTGATATAATTGAAATAAAAATTGGAGAAGAGAAAGGAGGTTTTTGTGAATACGAAAGAAGATTTTAATAAAAGCAGAGCAGCTCAAGAATTGTGGTTAAGTAAAAAAAATTGGAAAGAAAAAATAGAACATATAAAAATTCCTAGTTATTTAAAAGATGACTTAGAAGAATATTTCAAATATATAAAAGAAGGGAATAATATTATGTATTCAGCAGTAATCGATAATGTGATTGCAAGTATAAATGTTGCAGAACAAGAAAAGGATTTGACTTCTGAAGAAGCTAAATATATTAGAAAAATATTATAGGAGTATATTATGATTCAATTTAATGAATGCGAGAAAAACTTATTTCGAGGATATGATGGAGCAAAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAGTATTACTAGAGTAGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 41-3914 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAF01000022.1 Fusobacterium necrophorum DAB contig0022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 41 30 100.0 36 .............................. AATTTAGAAAATGCTTTAACAGGTTCTTCTGGAATT 107 30 100.0 37 .............................. CTTAGGGGTTACTTTAGAACAAGTGCATGAAATATAT 174 30 100.0 37 .............................. TTGGATTTCTATTATTTATTAGGAGAAGCTTATGTTA 241 30 100.0 37 .............................. GTGAAGAAGCATAAAGATAGAGGAGGAATATATGGGA 308 30 100.0 37 .............................. GAAAAACAATTTGGGAAAGTAAATCGAAAAAGATTGA 375 30 100.0 37 .............................. AACTTCAATGAAAATGTTTTTGAGATAATCAATCTTT 442 30 100.0 38 .............................. ATCAATTTGATATTGATGGAAAAATGACAATTGAGGTA 510 30 100.0 38 .............................. ACTGATACGGAAATAACAGAAAAACAAATTGCAAAATG 578 30 100.0 36 .............................. TAAATATAGCTTAAAAGCAACAATTATTTTTTAAAA 644 30 100.0 35 .............................. AGAGATGATTGTATTGGTAGAAATTTTCGTTCTTT 709 30 100.0 36 .............................. CTTATTCAGACAGCATTAAGTGCATTGGGTGGTCCT 775 30 100.0 35 .............................. GATGCACTATCATATTTTTCGAATACTCTCATAAA 840 30 100.0 38 .............................. CCATTTCTATTTGAGATTTTAGAACAATGCAAGAATAA 908 30 100.0 36 .............................. TATTCCATCATCATGTCTCTGGGAGGGAAAGATTTT 974 30 100.0 37 .............................. AGTTAAATTCAAGATATTTTTTATAGTGCCTTTAGAA 1041 30 100.0 35 .............................. GAGCTTATAATCTAAACAAAAAAAAATGGGATATT 1106 30 100.0 35 .............................. ACTGTAATCCCATATTTCTTGTAGACATAGATGTC 1171 30 100.0 35 .............................. AATTATATTGATATTTATGTCGTAAATGGAATTGA 1236 30 100.0 35 .............................. TCTATAATCATATCTATAGACAAAGTTTGCGATAC 1301 30 100.0 36 .............................. TAAGGTAAGAATATGAAATATGCATATTCAAACCTA 1367 30 100.0 37 .............................. TGATGATACATAATCCTGTTTCAGCTTTAGCAGGAGA 1434 30 100.0 35 .............................. GAAAAATATTATCTTGATTTTTTGCTCTCGGATAA 1499 30 100.0 37 .............................. AAACATGTAAATTCAGAAAGATTTGTGAGAATAGCAA 1566 30 100.0 35 .............................. TTTGAAAATAAAAAAGCGGGAGTAATAGAATGTCA 1631 30 100.0 35 .............................. CTTTGTACTGGGAAAATAGATATTTTAACAATAAA 1696 30 100.0 36 .............................. GATATTGTGAAAAATTATAAAGAACTAGAAAAAAAC 1762 30 100.0 36 .............................. GCAGATGTTTAAACAAGAAAAACTATAGTAAAAGTT 1828 30 100.0 36 .............................. CAGTTCCCAATGAATAACAAACCATCGTTGATTTCT 1894 30 100.0 37 .............................. AGAAATTTCTTTAAATAATGAAAAATTGGAAAATAGT 1961 30 100.0 36 .............................. GTAGTTTTAGTGCCATCTCATTTAATTTTTTTATTT 2027 30 100.0 36 .............................. ACCGCCGAAATGGTATTTGTGATGCTAGTAATTCCC 2093 30 100.0 35 .............................. TTTGTTAAGTTGGCTTTTAGTGTTTTTAAATACTC 2158 30 100.0 37 .............................. TAAGAATAACATTATCTAAAGCGCGAAAATTACTAAA 2225 30 100.0 38 .............................. CTATATATTTTTCAAACATTGAATCATACTCTTCTTGA 2293 30 100.0 36 .............................. GAGTTAGCACATAAAATAGGAGTAGAGTTTGCTAAA 2359 30 100.0 36 .............................. GAAGAAGCACTAATAATATTGAATCTTAAGGAGTTT 2425 30 100.0 35 .............................. GCCTAATCCAGAGGTGAGCTATATGCTAATATAGC 2490 30 100.0 35 .............................. AATTCTGTTTATGAAAATTGGGAGGATTTTAATGA 2555 30 100.0 37 .............................. TTACAAGTATTTGATGACGGAAAGAAAACATATATTG 2622 30 100.0 35 .............................. TCTGGAGATCCTCTTTTAGATAGCTTTTCTGCTAC 2687 30 100.0 37 .............................. TATTTTTTTATAGAGGCACAGCACCGAAAGTTAATCT 2754 30 100.0 35 .............................. TATTATAGTGCAATATCATAAAGATACCTCCCTTG 2819 30 100.0 35 .............................. TTTTATCAAAATCCTTTAAATTGTATTCTTGCCCG 2884 30 100.0 38 .............................. TAGAGTTAGCTAATCAAAAAATATCGAGATTGATAAAT 2952 30 100.0 37 .............................. TTATTATAAACATCATCTACTTTTAAATTTCCTTTAT 3019 30 100.0 36 .............................. GCAAATAAGAAAAAACTTTACGCCATCATCAAACGA 3085 30 100.0 34 .............................. TTGTTTGGCAATAAAGAAGTGAAGGCTCTTTTAA 3149 30 100.0 36 .............................. TCAATAGACAAAGTTCAAAGAGTAGCTAGGATTTTA 3215 30 100.0 35 .............................. CAAGTATTAGACGGTACAATATACAAAGTACCTTT 3280 30 100.0 38 .............................. AGAAAAAGCCGGATATACAATCACGATTGAAAAAATCA 3348 30 100.0 38 .............................. TTCTTCACTTAGTTTTTCACTCCCTAAGTCATCAATCT 3416 30 100.0 38 .............................. TTTTTTTTAGCTGCTTCAATCATGAATTCTTTATCAGC 3484 30 100.0 37 .............................. ACTGAACGAGGATTTTTCTTTTAATATTTTCTTTTAT 3551 30 100.0 38 .............................. TTTTCAAAGCCCCAATTCGTGCTTTTATCCTTTCTCTT 3619 30 100.0 36 .............................. ACGTTTCATGGAACTCAAAATGTGTTACAAACAGGA 3685 30 100.0 36 .............................. GCTTCATCAATAACGAATAACTTTTCGTCTGCGTAT 3751 30 100.0 38 .............................. CCATTATCTGTCTTTAACGATGGTGCATTTATTCGGAT 3819 30 100.0 36 .............................. AAGAATTGGCTTCATATAGCAAAGAAACCAATATAC 3885 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 59 30 100.0 36 ATTAGAGTATTACTAGAGTAGAATGTAAAT # Left flank : AATTTGTGATGGAGGGCTCTTTTTCTTTTACTCAGAATTAA # Right flank : TATGCATCGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAGTATTACTAGAGTAGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 5275-3657 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAF01000185.1 Fusobacterium necrophorum DAB contig0187, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 5274 30 100.0 37 .............................. CAAAATCCCCTTTGGTAACAACTCCAACTGCATATAC 5207 30 100.0 37 .............................. AAGAGGTAGTCAAAGGAGCTTGGAAAGGAGGACAAAC 5140 30 100.0 35 .............................. TAAAATAAAAATTAGTTTTAATGGAACTATCTTTA 5075 30 100.0 36 .............................. AGCTTCTAATGGAACTTCTGAAACATATGAATATGC 5009 30 100.0 36 .............................. AAATTTTGGAAAGTACTTGATTTTTTATAAGAAAAA 4943 30 100.0 36 .............................. GTTGCGACAATTTGATTCTAAGGTATTGAATCATTC 4877 30 100.0 37 .............................. TTTGTAGTTTGGAATAAATTCCATCAATGACAACTTT 4810 30 100.0 38 .............................. TCATTTTCTGCCTCCTTATATTCCCCATTCTTCCTGAG 4742 30 100.0 35 .............................. GACATACTTTCTGTCCTCTCCTACGTCATATCCAA 4677 30 100.0 36 .............................. TGCATTATTATCCGCTGTTAAACTGTTTTTTGCCGT 4611 30 100.0 36 .............................. GAAATCTTTGAAGAAGAAGATAATAATTATCCAGAT 4545 30 100.0 38 .............................. TGGATTACTGCTCAATTAGGTCATGGATTAGCTTTGAA 4477 30 100.0 36 .............................. CAGCAACTGCATAAAACTGAAACAACTGAATACATG 4411 30 100.0 37 .............................. AAAATACATAGGCTCTACAAAGAATAAAATAAAAAGA 4344 30 100.0 36 .............................. TGATACAGTTACTGGAAGATATTTACTTATTCCTAA 4278 30 100.0 36 .............................. ATATTCAAATGATATGTTAATGGGGAATCCTTTTAC 4212 30 100.0 38 .............................. AAGAATACTTAAATGCTGTTTTAAATGTTAGTAAAAGC 4144 30 100.0 36 .............................. TTTTACAAGATTATCTATTAAAGAAAATACTTTGAT 4078 30 100.0 35 .............................. GGAGAAACCATAACAGCTGTTGAACTTTCTCCAGA 4013 30 96.7 35 ................A............. CTACCTAAAATTACTCCCTCCTTATATTCTCCATG 3948 30 100.0 36 .............................. AGGGCTCTTGATTTCAGAAAAAATATCAGATAAGTA 3882 30 100.0 35 .............................. AAATATAATCTCAATAGCTGGTTATTACCCCATGA 3817 30 100.0 36 .............................. GAACTCTCTTAAGTAAAACTGAATATTTACTTCCGT 3751 30 100.0 35 .............................. TGCTTCTCCTATTAATTGATGGATTTTTAAAATAA 3686 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 25 30 99.9 36 ATTTACATTTCACTCTGTTTCTATTATAAG # Left flank : GCATATAGATTCCCTGATCGGTAAAAGCATGAGGATTGTACTTAATATTACTACCTCTTCCTGCACTCTTGTTCAAGGTCACATTTTGTGACCTTGAAAGTTTAGAGACTTCCTCGTCAGTTAATCGGAACATAAAATCTTCATCAAATTTTTCAATATTCCTTTTTACTTGCTGATTAAAAGCCTTTGTTTCATATCCATAGATTTCGGCTAATTCAAAGTCAAGCATGACCTTTTGTCCCCTAATAATATAAATCTTTTTCTCAAGGGATTCCTGACTTACAATCATCATTTCATCTTTTTTATCCATTTCTTTATTCTCTTATTCAAAGTTCCAAATAGTTCATTTCATAGACTATATTGTATCCTAAATGTAATATCATTCATCATAAAAACCTTTGAAAAATTAAAAACCTTATAAGTATCCCTATCAAACCACAAGACCACTCTGTTTCTATTATAAGCTTTAATCGCAAGAACGATTGATGTTGTGATTACTA # Right flank : CCGCATAAGATAAAGTCTTTTATTTTAGCTGATTTTCACTCCCAAATTTGTCGACCTCTTGTAATTGTATCATTTTTTATTGATTTCAACAAATAAAAAATGTCAAAAATCATCTCTAGTCCTTTATTAGAAGTAGTTTGTCGACCTCTTAGGAAATTTACATTATTGGGGGTCGACAAGCAAAAAAATACCCTCATATTATTTCATTTCAATATACTTTTTTATCCTTAACTCTTAAAAATGTTTTTAATGTTTTTCTTTTGGTGATAACTTAAAACATTTCTAGATGCATACAAAGCCTATTACAAATGAAACTCCTTTATTTTTTGATAAGAATTTATTGTTATCTTTTTCTCTATTTTCACTCCTTTAAGTAAGGTAAGACTCTACAGTCAAAGTATATTTCATCAACTCTTCATGCTGACGAATTTTTTCCTCTTTTGAAATACTTTCTTCTCCCCTACCGTTTCCGGTCTGATATGTAAAATCAATTGCACTTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTTCACTCTGTTTCTATTATAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 40-666 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAF01000231.1 Fusobacterium necrophorum DAB contig0233, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 40 30 100.0 36 .............................. CAAGAAGAAGGAAAAAAAGGGATTCAATTTACGACA 106 30 100.0 35 .............................. TATTTTTCAGATACAAGTAACTGTCAATCATTGGT 171 30 100.0 36 .............................. TCTAAGAAGAGATCATCTTCGTTATTTGGATCTACC 237 30 100.0 37 .............................. AACAGAAAATATTGCTGTTCTTATGGATTCCCAATTT 304 30 100.0 38 .............................. AGCATTGCTTTATATGCAGCCAACTGAAGAGTAATCCA 372 30 100.0 36 .............................. ACTGAAATTGGCGATGTAGTTGAAGAAGTGAAGAAT 438 30 100.0 36 .............................. ATCTCATTATTTAGAATCTCTGTATTTTTTTTAACT 504 30 100.0 36 .............................. GTTTTTACCACCTCATTCTGTTGATAATTCAATGAT 570 30 100.0 37 .............................. TGTCTTTTAAAGAATTCATTCTATTTTCCATCTTTTT 637 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 100.0 36 ATTAGAGTATTACTAGAGTAGAATGTAAAT # Left flank : AATTTGTGATGGAGGGCTCTTTTTCTTTTACTCAGAATTA # Right flank : TTGTGATGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAGTATTACTAGAGTAGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 4093-4934 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAF01000244.1 Fusobacterium necrophorum DAB contig0247, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 4093 37 100.0 36 ..................................... CGTACAAAAATACGGTTCCTTCCATTTTTATTCTGA 4166 37 100.0 38 ..................................... TAGTTTTTACGATAACTAATAAACGGAAAGTTTTGGAA 4241 37 100.0 38 ..................................... TCAACAACTCTTATATCATCTGTTCCTATTATTTTAAA 4316 37 100.0 35 ..................................... ATCTCCAATATCTATATTATCAAAAACTTCAATAA 4388 37 100.0 35 ..................................... CTATAATAATCATATCTAGTAATATTTTTATAATA 4460 37 100.0 35 ..................................... TTTGGCAACTGTTTTTTTTCTTGCCTCTTTCCCTT 4532 37 100.0 35 ..................................... TGTTTTTTGCTGTAATAGTTGAGCATTTTTTCCAA 4604 37 100.0 35 ..................................... TCTCTTTCCCATAAGTCCTCCTTAGTTGCTAATTT 4676 37 100.0 36 ..................................... GGATTACGATCTGATGTTTCTGGAACTTCTAATAAC 4749 37 97.3 39 .................G................... TCTTTTTCAAGTCTTACTGTTTTATAAATTTTCGTTGAG 4825 37 100.0 36 ..................................... CAAGTAAAACTGCTTCGGGGTAATATATGCAATCTT 4898 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 99.8 36 ATTAAAGAGAATATCCATCATTAATGAGGATTGAAAC # Left flank : GAAAGAAGAAATAAAATACGAATTCGAGTAAAAATATGCATTGTCTCAAATAAAGTTTTTATAACATTAATGCTATTATCTGAAAATTTTAACATAAGAAAGGATTCTTCCAATTGATTGATTTTCTTTAGAAGATGACATTTCGTATTGATTTTAGAAAACATTCTGTATTTAGTATACACGGTATCAAGCTCTACTAATATTTTTTCCATATTTTTTCTCCTATTCTTGACGATTATATATTTATACTATACAATAGAAGTGGAAGAAAATAAAATATTTTTTTACGAAAGTATTTAATGTTTTATTTTATGCAATATAAAATCTTATTTGAAGGGAGGTTATGATTACGAAAGGGAAAATAGTCATATCAAAATATAAGTACTTTTTGAATAAAAATGTAGAAAAATATCAATTTATTGTACACTTTTTTAAAAAAATTACGAAACAAAATAGTCAAAAAAGGATTGGAAATTATGAAAAAGAAACACAGATTGCTA # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAGAGAATATCCATCATTAATGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA //