Array 1 65144-65508 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIJG01000003.1 Geobacillus sp. Manikaran-105 scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 65144 30 100.0 37 .............................. TTCAATACGTCGTTTTGCAACGTTACGCGATCAATGA 65211 30 100.0 37 .............................. TCCCTTCAAACGAAAAAGTTTTTACATCTTGGCCAAA 65278 30 100.0 37 .............................. ATGTCGAACATAAATTATTTTGTCCCGGTTGGACAAA 65345 30 100.0 37 .............................. CTGCGGGTCTGATCGCTGGGCTGTCATTTGCTTTTGT 65412 30 100.0 37 .............................. ATCTGTTCAACAGTTAAATCACGTGGTACAGGAATAC 65479 30 86.7 0 ...............G..G....C....G. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 97.8 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TGAACCCGGCGCTGTCCGACGACATCATCCGTGTCGCCCGCTCGCCGATCCGCAAACTTGGGCCGAACGACCGCCTCGTCGCGCCAGCCGTGCAATATTGCGCCTTATTCGGCAACGTCCCGCACGGCTTGGCTAAAGGAATCGCCGCCCTCCTGCGGTTCGATGACGACCGCGACGTGGAAGCCGCCGCCCTTCAACAAACAATCGCCCAACATGGAATCGAAGGCGCGCTTCGGCAATACGCGGGGCTTGAAAGTGGGCACCCGCTCGTGGCGGCGGTGAAGGACGAGTACGGAAGAATGGAGAAAAACAAAAACTGACCGTCTTGCAAATGTCGTCGACCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGTTTTTTTGCGTCAAAATCCTACAACCAACACGGCTCGACAGTATTGACAGAATTTTTGAAACGTGATATTCTGAAAACAGTCAAAAGGGGAAAAGCTTGATTTTATGCGAATGGTTTGG # Right flank : CGCTATACAGTACGGTACAACTTTTTCTGTCCCCGATGCAGGATTTTCACCCCCTGCTTGCGAATGGATAGAATTGAACACGTTCAAAGAGGGGTGATCGAATGGCCATTGACCATGACCGATTGTTCAAAGAGCTGATTCAAACGTTCTTCGAAGAGTTTCTTCTCCTCTTTTTTCCCGACATGCATGAACACATTGATTTCAGCCATTTGTCCTTTCTGTCCGAAGAACTGTTTACCGATGTCACGGCAGGTGAAAAATACCGCGTCGATCTATTAGTCGAGACGAAGCTGAAAGGGGAGGATGGGCTGATCATCGTTCATGTGGAGAATCAAAGCTACGTGCAACCATCGTTTCCAGAGCGCATGTTTATCTATTTCAGCCGTTTGTTTGAAAAATACCGCACCCGCATCGTTCCGATCGCTGTCTTCAGCCATGACACCCTCCGCGAAGAACCGTCCGTGTTCTCAATCGAGTTTCCCTTTGGCGACGTGCTGCAG # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 73616-74386 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIJG01000003.1 Geobacillus sp. Manikaran-105 scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 73616 30 100.0 38 .............................. AACATCATCCTGACGACGTTGAGTTTGTCGTGCTCGAC 73684 30 100.0 35 .............................. TGGGAGGAGCTTGGGCGTCCGGGGGAGTAGTTTTC 73749 30 100.0 37 .............................. AATAGCCTGCAAGCCCTCTCGCGATCGCAAATACAGC 73816 30 100.0 37 .............................. CAATAGTGATGCGAACAATTGTAAATCAATTCCGCGC 73883 30 100.0 41 .............................. GTTCGTACGCCTCGAGTGCCGCGTTGCACTCCGCCAATTCC 73954 30 100.0 37 .............................. TAAGAATGGACACAGGGGAAAAGATAGAAAAGGCAGA 74021 30 100.0 38 .............................. AATCAAGCGGAAGATGTTCCAAGAGGCTTGGAAAATTT 74089 30 100.0 35 .............................. GTCGAGGATGTGGACTTGCGATACACACCGTCAGG 74154 30 100.0 40 .............................. AAGTATCTCGCTATTGCTCCTATCGACGCGAACCATGGCG 74224 30 100.0 37 .............................. TAACTTTCTTTAATCATGATTCCGATCCGGAGACCGA 74291 30 100.0 37 .............................. AACAAAATTTCGAACGAAAGTTTTTGAATGACCTCAA 74358 29 86.7 0 .......-........C....A.C...... | ========== ====== ====== ====== ============================== ========================================= ================== 12 30 98.9 38 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TTGGGAGCGCAAATCGCCTACACCCGTTTTAACGCCTTGCCGCCGCTTGTGTATGCAAGTGTGTTTGGGCGTCTCGTTTTGTCGCCGCTGTTGGCTGGGTCTTTGATCTTTCTATTAGGAATGGATGGCGTGACGGCTCAGGCGTTGCTCATTGCTAGTTCCTATCCGTGCTCGCGCAATACGGCGCTGTATGCACTCGAGTATGACTGCCACCCAGATTACGCCGCCCAGGCGGTGTTGGTGTCGACTTTGTTGAGCGCCATTACCGTGACAGGCACAGTATATGCGGCCCGTCTGCTGTTTCCGATTGGCGGATGAAAACGGGGGCAAGTTGTCGTCGACCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGTTTTTTTGCGTCAAAATCCTACAAACAACACGGCTAAACGGTATTGACAGAATTTTTGAAACGTGATATTCTGAAAACAGCTCAGAGAGAAAAAGCTTGATTTGATGCGTATGGTTTGG # Right flank : CTATTCCCCCCAAAGCTGAACCGCTGCTCAGTTCGGCTTGTTTTACGGCTCAACGTCGGAAAAGGGCAAATGGCGCATGCCCAAAAAACGTGGGGAGGGACAAGGAGGAATTTGGCCGCGAAGAGCGAATACAGTACGGTGAATCCGACAATTGCAGGGAGGGAAAACGTGGCCAAACAGCGCATCGATCATGACCGGTTGTTCAAAGAGTTGCTGTCGACATTTTTTGAGGAGTTTTTGCTTCTTTTCTTTCCCCACGTGTACGAGCAAACAAAACTTATTGTAAACCGCTTTCATTTGGTTTATAATAAAGCTAAACCGGTTTATGAAAACGCTTTGAACTAAATCGATTTAGTACGAGAGAGGGATCCCTTTTGAAAAAAGTAACGATGGCCGATGTCGCGAAATTGGCCAACGTTTCGAAAAGCACGGTCTCGCAATACTTGAACAAACGCTATGAATATATGAGCGAGGAAACAAGAAAGCGCATCGCTCAAGCG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1370-1602 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIJG01000059.1 Geobacillus sp. Manikaran-105 scaffold_58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1370 30 100.0 37 .............................. AAGAAATCGAATTTGTTACACGCGTTATGGATTACCT 1437 30 100.0 35 .............................. CTGTCATAACCGCTTGTGACGCTCCCGCTGTCTAA 1502 30 100.0 41 .............................. TCATAACAATCTCCTCCTTGATTTCTTCTTGATTTGTATTC 1573 30 96.7 0 .........................A.... | ========== ====== ====== ====== ============================== ========================================= ================== 4 30 99.2 38 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TGAAACGTTCGATGGAAGAAAGAAAACGCAATTTTTTGATCCCGATGATGAGGTGTTCCCCCACCTGATTGAATTGAATTTCCGTCATAAATATGAAGCATACTACGGTGTTCCGCCGACGGAAAGACTGTTGATCGAGCCGATTCACGTTCATCATCGTCATCGTGTGGTGACGATGTTCAAGAATATATATATTACAGGATGGCTTGGCTATTACCGCCTCTGTTCTTCGCCAGAACAGTTGACATTTTTATATCATGTTGGTCTAGGCGGCCGAAATTCACAAGGATTTGGCATGTTTCGCGTCAAAAGTGGATAAACGAGTCATGGGATTGTCGTCGACCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGGTTTTTGGTGGTTCAGACTTACAGCCATCGAGGTTGAAGGTTATTGACAGAATTTTTGAAATGTGGTATTCTGAAAACAGCACTAGATCGAAATGTTTGATGCGACAAGCATTTTTGG # Right flank : CTTATCCAACTCCCCGTCTTCCACACATATCTGAATCGCGTTTTCACCCGCGCAATTTGGTGATCTTTTCACCTCTTGTGCTGTCTTCGCTGGCAATGTGGTGATGACCCACCATCTTTCCTTGATCCTCGCCACGCGCAAAACATCTTCTTCGTTCTGTTTTTCTCGCGGCAGCTTTGTTCGATGCGCTATACTTGGATAGAAGGAGCAACATTCGCTTGCTTCTGGATGGACGTTTGTTTTTGCCTTTGTGGCAAGCAAAGGAAAGAAAGGGGAACGGTTATGCGCTGCAAGCTTCGCGATCTCGGTTTTTCCATCGGCACGCTTCCGACAGGGGAGCGCAATCAAGTCACCGATGTGCCTGGGGTGCGGGTCGGTCATGTGACGATTCGGGAAGATATGAATGAGCGGACAGTGATCCGCACTGGGGTGACGGCGGTGTTGCCGCATGAGGGCAACTCGTTTTTGGAGAAGGTGCCCGCGGCTTGTTTTGTGTTGAA # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //