Array 1 49432-55097 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIED01000007.1 Streptococcus suis strain 2016UMN125.4 NODE_7_length_96112_cov_106.509507, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 49432 32 100.0 34 ................................ TTGCTCAAAGAGATAGTCTGACATGATTTGTTGC 49498 32 100.0 36 ................................ TTGCAAGAAGTAATGATTGCTGCTATCGAAGAAGGG 49566 32 100.0 34 ................................ TCACATAACATCATATCTAGTTCAAAAATTGCAG 49632 32 100.0 33 ................................ ATACCTTTTATCTAAAGTAAACGTCTGGCTAAT 49697 32 100.0 36 ................................ ACCCACATTCACTGCATAGTCACCTATGCAGCGGAC 49765 32 100.0 33 ................................ AGTAAAGGTTAACGATGAAGAACCGGTCATTTT 49830 32 100.0 33 ................................ AAGCGTAAGGTCCAAGCCTATCTTGCCCAACTG 49895 32 100.0 34 ................................ TAGTGGTGCGACAAGTTCTTTCCCTCGGAGACCT 49961 32 100.0 35 ................................ ACATCAGATCGGCAATCAAGGTCGCTCTGCACCAA 50028 32 100.0 35 ................................ AAGATGTTGTCGTAATTGATAGGACCGCCAATAAC 50095 32 100.0 37 ................................ ATAAACTGCACTTGACTACTTCCACAACGTGGGCAAC 50164 32 100.0 33 ................................ TGTAGATGCGTATGTATCCAGCATCCTTTAATT 50229 32 100.0 35 ................................ AGTCCTTGACTGACAGCTAGCACGGTGATGCCCAG 50296 32 100.0 36 ................................ ATGCCTTCAAATTCTGCAGGCTTACGCTTATTCATT 50364 32 100.0 34 ................................ ATCCGTCAGCTCACGTTTGACCTTATCCTTTTTG 50430 32 100.0 34 ................................ AAATATACCACAGAACCTAGTAATAGAGATTTTT 50496 32 100.0 34 ................................ ATCTTAATTTCTTTATATAACATATTCAAAACCT 50562 32 100.0 33 ................................ AAAAAGAGAAGATAGAATCAGTAAGAAATACCT 50627 32 100.0 35 ................................ CGTCTATATCGTGGATTTTGATAATCTGTAATTCC 50694 32 100.0 34 ................................ TGATTAGCTCGACTAACCTGTCAAGTATTTCAGA 50760 32 100.0 34 ................................ GGCCTGCTGACGCCACATCACGCAATTGATAAAG 50826 32 100.0 33 ................................ TTGGGTGCCAATTATCAATAACATTTCATTCTT 50891 32 100.0 35 ................................ ATCTACACAGTCGGAAAAACTGGATTGCGATTTTC 50958 32 100.0 36 ................................ TTATACATTGATTTTACCCTATTGAGTAGAATTAGT 51026 32 100.0 34 ................................ ATCACTTAACGTATTTGCTTGAGATCCTCGGAAT 51092 32 100.0 33 ................................ TCTTTTGAATGAGTCTGTTGATGTTTAAGTATT 51157 32 100.0 33 ................................ AATGATTATTATGGAACTAAGGTACTTAATAGC 51222 32 100.0 34 ................................ TTCCTGGGAACGAGAGTATCTCGCACAGGATTGT 51288 32 100.0 38 ................................ ACGTCCTTCCAGGTAGTTGTTGATGAGGTCTAGTAGTC 51358 32 100.0 33 ................................ AGGAAAAACTTCAAGAAAGTTGGTGATGAATAC 51423 32 100.0 36 ................................ AGGAACTATCTGAAAGCTGGCTGGCGAACTACCAGC 51491 32 100.0 35 ................................ AAAAAATCCCACAAATCAAAATCTTGAAACCCCTT 51558 32 100.0 33 ................................ ATCTTACTTCTCCAATCGTTTCGCTATCGCCTC 51623 32 100.0 34 ................................ AAAATTACTTGATGCACTCGAACCAGATGATAAG 51689 32 100.0 36 ................................ AGAAAGCTACACAACAAAGTACGTTGACTACAATAC 51757 32 100.0 34 ................................ AATTTAAAGCGATTTTTTTAACTTAAATCAACCT 51823 32 100.0 34 ................................ CCTCATCACATACACCACCTGCTCCTCGCTCACA 51889 32 100.0 33 ................................ TACGCTGGAACACATCCAAAATGGGTAGCTGAT 51954 32 100.0 32 ................................ AACACAGGGAATCTTTGAGCGTGAACTTTTAA 52018 32 100.0 35 ................................ AAGATTATGCCAACGAGGCTAAGAAAGCTGATGAC 52085 32 100.0 35 ................................ AGTCACGGTAAATGTGATTGAGGCGATAGCGAAAC 52152 32 100.0 33 ................................ ACCTCCTTTACAAAATTAAAAAAGCCACACTTG 52217 32 100.0 34 ................................ ATTTTTTTATTTTTAGAAATCGCTTGGTATCAAT 52283 32 100.0 33 ................................ ATTTCTTTTCGTCTGGTTTGGTTTGGTCTGTTG 52348 32 100.0 32 ................................ TCAATCATTAAATGATAATATAGATTATTATT 52412 32 100.0 35 ................................ GGTAATTATCAACGGTATCAAACACGAATGGAAAG 52479 32 100.0 34 ................................ GTATAACTCTGACAAAGGAACACGGTCTCCCACA 52545 32 100.0 36 ................................ TAGAACCTCCAAAAGACTCGCTATCTGCCAAAGAGA 52613 32 100.0 35 ................................ ATCCATTGCGTGATTGTCTTTATCAATAGGCTTAC 52680 32 100.0 33 ................................ ATCAACTAACATGTGATCAAATATCACACTCAC 52745 32 100.0 33 ................................ ATGCTTATAGCAAAGAGGATAAGTCTTACACTT 52810 32 100.0 34 ................................ AATTTGTGAAAGGAGCTTAATTCATGGCTTTAAT 52876 32 100.0 33 ................................ TTTCGCCTGCTAGCCTTTACTGGAATGAGAAAA 52941 32 100.0 34 ................................ AGTTTAAGGCTAGGTTCTGTTAGTAAGTGAGCTA 53007 32 100.0 35 ................................ AAGTTAAGTATAAGTAGGAGGTATCTATGGTTAAG 53074 32 100.0 35 ................................ TGCCTTTATAAAATCCTTTGGTAAAAGCATGTCAT 53141 32 100.0 33 ................................ TACTGACGTACACAAGTATCATGGTAGGAGAGC 53206 32 100.0 33 ................................ AACCTCCTAAGACTACTAGAGTATCCAAGGTTA 53271 32 100.0 34 ................................ TTGATAGCTATTGCTGGTCAATGTAGGGGCGATA 53337 32 100.0 35 ................................ TCTTTATATAGGCTGGCGACTTGTAAAAGTGTATC 53404 32 100.0 35 ................................ TCCGTCTCCTTGTGGCTCTCCGTAAGCATTTCGAC 53471 32 100.0 33 ................................ TCTGGAGGTAATTACATTACACTTAACCCTCAA 53536 32 100.0 36 ................................ ATCTATCCCTCCGTGACTGCATATCCGAGTATCTTA 53604 32 100.0 34 ................................ GTTATAGTCACAGCAATGTAAATGCCACAACTGG 53670 32 100.0 35 ................................ TGTTTGATACTTGGGGTAGTGGTACTGTTGACATG 53737 32 100.0 34 ................................ ATAGCTTTTTTTGATAACATTTAAGTACACCCCC 53803 32 100.0 34 ................................ TTAAATATCTTGAAGAAAACGGCCCTATAAAAGG 53869 32 100.0 34 ................................ AACAAATAACGTTGGAGGACTTGAAATGATCAAC 53935 32 100.0 33 ................................ ATTGATTTCTTACTGCGATCCTTGTAGCTAAAT 54000 32 100.0 34 ................................ AGCATTATCTTTTTACGTTGTCGCTTGTTCATCT 54066 32 100.0 34 ................................ TGGGGTCCCTAATGCTGGGATTATGAATGACCAA 54132 32 100.0 37 ................................ AAAATGCAAATCTTTGACCCTGCCGTCACGAAGGCTG 54201 32 100.0 34 ................................ AGCATATACATTAATTGTGTTGTTTCCATAGCTG 54267 32 100.0 35 ................................ ATATAGCTAATTTCAGCCAGCGCAGAAGCGTTGTT 54334 32 100.0 35 ................................ AGCATTGATTAATAATTATCTTGATGAAACAGAAA 54401 32 100.0 35 ................................ ACTATTTCAGAAAATTTAACAAATGCAATACAAAT 54468 32 100.0 36 ................................ ATCATTTCCTCCTAAAACGGTAAGCCATCGTCAGAA 54536 32 100.0 36 ................................ CAAATGACACAGTTGATAAAGTCAGCCTCACGGTCG 54604 32 90.6 34 .........C...C..........G....... TGATTTAGGTGGTGTATATAAAACTACTAAAGAT 54670 32 87.5 34 .........C...C..........GC...... CCCGAACAAGTAAGACACGATTGACAACCTCCTC 54736 32 84.4 34 .......T..T..C.A........G....... ATTATACAGGTGGTTTACAGGTTCATACAGGAAC 54802 32 84.4 33 .......T..T..C.A........G....... CAAAAAAATGGATGACAAGCTGGTACTCAACAA 54867 32 84.4 34 .......T..T..C.A........G....... GGGCAGATGTTATGTCACAAGCGCAGACTATACT 54933 32 84.4 34 .......T..T..C.A........G....... TCCTGTTAAAATAGTTTTGTTTGTAGAGGATAAA 54999 32 84.4 35 .......T..T..C.A........G....... CCTGCTGTCAAGATGTTGGACCACCTCCTCACCGT 55066 32 78.1 0 .......T..T..C.A..A.....G.....G. | ========== ====== ====== ====== ================================ ====================================== ================== 86 32 98.6 34 GTCGCACCCTACATGGGTGCGTGGATTGAAAT # Left flank : GCAAAGGCTATTCGAGGCGAGTTGGACAGTTATCCTCCGTTTATGATATAGGAGCTATATTATGATGGTATTAGTGACCTATGATGTCAATACAGAAACAACAGCTGGACGAAAGCGGTTGAGAAAAGTAGCCAAGCTGTGCGTTGATTTTGGTCAACGTGTGCAACATTCTGTCTTCGAATGTTCAGTCACTCCAGCAGAATTTGTTGAAGTAAAGAATAGATTATTGGAAATCATTGACAAGGAACAGGACAGTATCCGCTTTTATATGCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGGCGAGATACTAGTTATGATCCAGATCAAGGAGTCCTTCTGTTATAGATTCTCTCTGCGAATCGGACTTACTCATTAAATGTGAGGAGATTCGCGTGAAAAACATATGAAAAGTAGTGAAAATAGAGTGAATTTGTGGTATATTCTATATCTGTAGAAACTTTATTTTTACAAAACAGTGTCAAATGGCACT # Right flank : TAACGTATCGACAGACTAGCTGCTCGGACGGACCGGTCGTACTCTTTGCGTATACGTAGGTTGAAGTTGTTTTTTGCTTAACACAGTATATCTGGCATGGACGTGTTCGAAGTTTCCCTCCTTTAACTCATCTCCCCACAATTTTCGAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGTACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGTCGCCGGGTTGCGGAAGAGGGCTTGCAGATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACCTGACGGTGGATGGAGCAGATGAGGTTGATGGAGACTTCAATGGGATTAA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //