Array 1 25806-28396 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIAH01000040.1 Escherichia coli strain 30-1BK entry40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25806 29 100.0 32 ............................. CCGGTTCGCGAGGGGATCAATCTTCGCGCAGA 25867 29 100.0 32 ............................. CCCGGACGGCGAAACAGATAACCCCAATCAAC 25928 29 100.0 32 ............................. GGCGTTCATGGGTTAACACTGACCCGGCGGCG 25989 29 100.0 32 ............................. TCGCTATGGCCGGTCGTGTCGCTGATAGCCTC 26050 29 96.6 32 ............................A TTCTCATAAAGACGGGGAACCAGCATAACGCC 26111 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 26172 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 26233 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 26294 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 26355 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 26416 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 26477 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 26538 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 26599 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 26660 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 26721 29 100.0 32 ............................. GGTTATTTATAATCCATTGTTTCCATTACCAG 26782 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 26843 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 26904 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 26965 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 27026 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 27087 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 27148 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 27209 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 27270 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 27331 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 27392 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 27453 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 27514 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 27575 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 27636 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 27697 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 27758 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 27819 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 27880 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 27941 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 28002 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 28063 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 28124 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 28185 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 28246 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 28307 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 28368 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 43 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 551396-552951 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIAH01000011.1 Escherichia coli strain 30-1BK entry11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 551396 29 100.0 32 ............................. CCAAAGCAAAAGAAGCTGTCGATAATATGCGC 551457 29 100.0 32 ............................. CCTACAGTTGCAATACGCTCACCAGGGCGGCG 551518 29 100.0 32 ............................. AATATACAACGTGCCGTATATTCCGTTCTCTG 551579 29 100.0 32 ............................. TTCAAATTGATACTGTAGCGAGCGTGCGGTTT 551640 29 100.0 32 ............................. CCAGCGTGGTTCGCTCATGGCCTGTCTCCATA 551701 29 100.0 32 ............................. GCGTCTATCAATTGACGCGCGGACGCTACGCC 551762 29 100.0 33 ............................. GTCTATTTGTCGTTAATCGGTACTGATACGGCA 551824 29 100.0 32 ............................. TCTCTCCCGCCATTGGTGCACTGGTTGCATCA 551885 29 100.0 32 ............................. GAATCCCAGAAAATGCAGCGCCCCGGCGCGCT 551946 29 100.0 32 ............................. CAGGAGACGGCCAGCCGGAACGGCGGCGGCGT 552007 29 100.0 32 ............................. AATTTGCATCACGTAGGGGCGGGGCTCAGTGA 552068 29 100.0 32 ............................. ACGGCACGCGTTACGCACCCGGACAGCCAATC 552129 29 100.0 32 ............................. GAACCGCATCAGCGGAAACCGACAACGGGAAG 552190 29 100.0 32 ............................. AATTCAGCAAAATTCGTGACTGACTCGATACA 552251 29 100.0 32 ............................. GCAATGGCATGGGCGAAGCAGAACGCAAAAGA 552312 29 100.0 32 ............................. CTGACACACTCAAGAAAAATCCCCTGCACATC 552373 29 100.0 32 ............................. GCCAGCGTCCTGAAAACACCCTCAGCGTGCAT 552434 29 100.0 32 ............................. TCGTGAGCAATTTTCGCTGGATCAACAGGGAA 552495 29 100.0 33 ............................. GCAGCCACATCCTGTTTAACTCCATGTATTCGC 552557 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 552618 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 552679 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 552740 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 552801 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 552862 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 552923 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //