Array 1 34313-35060 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWBZ01000208.1 Hafnia paralvei strain 1133_RAQU 948_66437_864208_570+,843_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 34313 28 100.0 32 ............................ ACAAAATTTTTACATTCCTATTTTACTAGATA 34373 28 100.0 32 ............................ CTGCGCGCCGGCTTTTTCTGCATCACGACCCA 34433 28 100.0 32 ............................ AGAACAGGAATTATCGGCTACCCGTTCGACAT 34493 28 100.0 32 ............................ TTATCCTTCTTGCTGCGAGGTTCGGTAAGAAT 34553 28 100.0 32 ............................ ACGTCAAAAACTATCAAACGCTGGGTACAAGA 34613 28 100.0 32 ............................ AGTGCAAAAACAGCAGATCGATACAATCAACA 34673 28 100.0 32 ............................ TGAGCGAGCGCGCCGAGTTGTTGCAGGGTGGC 34733 28 100.0 32 ............................ TGCCAGAAGGGGGCGACCTGAACAACGGTCGG 34793 28 96.4 32 ...C........................ ATATGTCTCGTTCAACCACCCTTTATTGCCTT 34853 28 96.4 32 ...C........................ TTGGAACCGTGTCAATAACTGCATTTTGAACA 34913 28 96.4 32 ...C........................ ATTGGCCGCCGGACGACGTGACTGTCCAAAGT 34973 28 96.4 32 ...C........................ GCCTTTTGTGGTTCGTTTAATGCAATTGGTAT 35033 28 92.9 0 ...C.......C................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.3 32 GTTTACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTTGGTGCAGTGGTAGGAACGTTGTTGGCACTGGCTTCGGCGCGCAGTGAATGGCCGATGGTCAGCTCAATGTTCTTATGCATTTTCGCCGCAATGATGTTGTTCCTGTACGCTTCTAGACCTTCCAAGAGTAGCCGCGTAGAACCTGTCTGAGCTTGACTGCTCGTCTCCCCGTCGCGGAAAGAGGCGGGGAGGCCGACGACTGGGCGTTCGGAGATATCTGCGGCAACCGTGTGTTGACCATATCACACAGCTTTAGCATCAGATACGCAGATGCTTTCAGCCACGCACTCACCTGATCCAAACTCTTCTACGGGATTTGAACCCCATTCTCCAGTGATTCACTTAGAAATGAAAATCCGTGGCGCAAAACCCTTTTTTCCTACCCACACGTAACGTATTGATTTTATGTGTGGTGCCGAGCCAGAAATAAAAAAGGTCTTTTAACCAAAAATGAGTTACCGCTCTGATTAGTCAAACCTTTTTGCTATTATTCTACA # Right flank : AATATAATCGTGCTAACTATTTTCAGTTTTTGGCATGGATTTTCATTTTTTTAACAGAACATCTAACTTAACTAGGTAAAATCCATTGTGAAAAGACAAAGCATTAAAGTTATTTAGCATTCGTTGTGCTTTTTATTTTCCATCAAAACAATTAATTAGCTAATTTCATTGATCATGGTTCAGTGATTTATTGTATTTTGTATGTAAATTGAAAAACACGACAAAGTAATTAAAATGAAACGAAAATGGTTGTGATAATAAAGATAAAAGTATACATATAACCCCAATAACCGATCTCCCTCCATCGTGGTACTTCTAGAGTGAAAAAATGGAGTAGCGCCAACAAGATCGTGCTTTAGGCTGTTTATTCTTCGGTGTTACCGAAATGTAATAAACAAACTCATAACAAAATGACGATTAAGTCATCAAATAGCCGGAATAGTGCGAACTTAGGTTTACGATGTGAGTTTTTTGTGAAAAAATTGTAGTTAGTTTTTAAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTTACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 44589-45996 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWBZ01000208.1 Hafnia paralvei strain 1133_RAQU 948_66437_864208_570+,843_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 44589 28 100.0 32 ............................ GCGTTTTCGTGCTGCTCCCACGCAGCCTGAGA 44649 28 100.0 32 ............................ CAACTACGCCCGCAGGTTGCTACATCTGCACT 44709 28 100.0 32 ............................ CTCTTCATCAGTGCAAACGATAAGGCTTGTTT 44769 28 100.0 32 ............................ AATAAACGCATGACATTGCTAACCAAAGAGGG 44829 28 100.0 32 ............................ GTGTTAGCGAGTGGCGATAAAAACGCCGGCTA 44889 28 100.0 32 ............................ AGTTGTTTGCTGATAGCTCAACTACGGCGCTT 44949 28 100.0 32 ............................ TAGCAAGCCACGCCCGAGCAGAGCGCCAATGA 45009 28 100.0 32 ............................ GGGGACTCCGATTGCACTTGTAACACCTTCAG 45069 28 100.0 33 ............................ TCCGCAAGTTCCACCTGCTATGGCTGCATTGAT 45130 28 100.0 32 ............................ TAACGAACCTTTCGGCTTGATATCTATCAATT 45190 28 100.0 32 ............................ AAGACCACCGCCAAGCAATGCCCCGATAAGAA 45250 28 100.0 32 ............................ TGTATATCGACCAGCATTAATAGCACCAATTC 45310 28 100.0 32 ............................ AGACGGCAAATCAACAATAGAGTTACCTTTCT 45370 28 100.0 32 ............................ TATACAATTTAGAAGAAGGATTTGCTCAGGCA 45430 28 100.0 32 ............................ ATAGCTGAGCAACCAAACAGCGAGAAAGAGCT 45490 28 100.0 32 ............................ AATGTTGTATGAGCCAAACTTTGTGCCGGCAA 45550 28 100.0 32 ............................ AACCAGACCCCGAAAGGGAGCTCGGTGCTGTC 45610 28 100.0 32 ............................ AGTATGTGAACAACTGACTGCTGATGGATTCC 45670 28 100.0 32 ............................ AAACCACAAACGCGGCACACCATGCAGCTGCA 45730 28 100.0 32 ............................ GAAAACCGAAACCGAACAGCGAAAAAAACCGA 45790 28 100.0 32 ............................ CATGAGTGTGGGTAGCCGTTGCGCGCTAATTT 45850 28 100.0 32 ............................ TCACAATTTACAAGAAAATTGCTCAATAGATC 45910 28 96.4 32 ............A............... CAACGGAAACCCGCCGCTATCGGGAGAGAGTA 45970 27 89.3 0 ...A........A...........-... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.4 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : TACACAATGCAGCGACATTCAACGGATCCCTGAGAATGTGATGCATTGCACCGTGAGTCGAGTGCAGGTGAAAAGCAGTGCGGAACGACTGCGGCGCAGATCGGTTAAAAAAGGCTGGCTCACCGAGGAACAGGCGCGGGAGCAAATTCTGGATGCCAACGAGCAACGCACTTCACTGCCCTTTATTTCGTTGAAAAGCCTATCCACTGGACAAATGTTTCCGCTGTTTATCCGCCAAGGGAAAGCGCAGTCTCATCCTCAGACGGGAACCTTCAGTAGCTACGGCTTAAGCTCAACCGCCACTGTGCCGTGGTTTTAGTTTTGTTGGTTTTCAGCGCCCGCCTGAAACTAGACGGGCGCTTCAGCTAAAACCCTTTTTTATTGCTTGCTCGTAACTTATTGATTTTCAATAATCATGGATGATGCAAAATAAAAAGGGTTTTATAAAGAGTAACAGGCTATTGTTTTGATTTATAAAATCTTTCTCCAGTTATTCTACA # Right flank : ACGGGTTTGTCGTTTAGGCTACGAACTCACGGCCGTTCTTTTGCCGATTTAGCCTATCTCAGTCAGCAAAGGCTAATAGCTGGCGCGTGTAGTCTTGAGTTGGATTGGCAAAAACTTCAGCGCAGTTTCCGTGCTCAATCACTTTTCCGTTTCGCATCACCATCACCTGATGGCACAGTGACCGCACTACCTGCAAGTCATGGCTGATGAACAGGTAGCTGAGCTGGTGGCGTTGCTGAAGTGTTTTCAGCAGCGTTAAAATCTGTGCCTGCACGGAGCGATCGAGCGAAGAGGTCGGTTCGTCCAGTATCAATAACCGAGGTTCAAGAATTAATGCGCGGGCAATCGCAATACGCTGACGCTGACCGCCGGAGAACTCGGTGGGATAGCGATAACGAGTTTCTGGATCGAGCCCAACTTCGTTCATAGCGCTGATTACCCGCTCTTCCCGTTGCTGTTCGTTCAGCTTTTGGTGTACCTGCAAGCCCTCGGCGATGATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //