Array 1 83727-83338 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEBD01000025.1 Haemophilus influenzae strain 39P1H1 N39P1H1_12_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 83726 37 100.0 35 ..................................... ATCCAATAGCCCCGTTATGAAGCGCATACTCCACC 83654 37 100.0 34 ..................................... TGATAAATGCCCTTCTCGCTGCACCATGTCTTTG 83583 37 100.0 32 ..................................... GCACAGTTTGATCCAACATGTTGTCTAATTCT 83514 37 100.0 32 ..................................... GCACAGTTTGATCCAACATGTTGTCTAATTCT 83445 37 97.3 34 ....................C................ GCGGTAAAGTAACCGTAAGTGGTGTAACGAATGG 83374 37 94.6 0 ...................................GT | ========== ====== ====== ====== ===================================== =================================== ================== 6 37 98.6 34 GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Left flank : TTAAATTCTAGGAAGAAAAAATGGCACAATATTTAATTGGTTACGATATTGCCGATCCTAAACGGCTACAACGGATTTATCGTCGAATGACAAATTATGCAACTCCGATTCAATATAGTGTATTTATTTTGGATGGCACAGAAAAACTACTTAAGCAATGTTTAGCAGAGATTATGTTAATTTTCCACAAAAAGGAAGATGATTTGCGCGTCTATCCCTTACCAGCCAATGCGACTCAATGGCGACTAGGTAAATCAAGTTTACCTGATGGGATTTACTGGACGGCCTTGCCCACAGCCTTAACCTTATAAAATGCTACTGGAGTATTTCACAAACTCTGCTAAAATACACCGCACTTTTGGCTGAGTTTTGAAAAAAAGAAGAATGATAAAAATTGTTCAATATTTAATCAAATTAATACCCAACTATTCAAGCATCAGAAAAAGTTGGGAAGTGGCTCTGGGAAGCCTTGCCACACAAGGCTCTAACACCCTACTGCA # Right flank : AGATAGAGATTTATGATTAATAAAAATATCGAAAAGCTAAAAGGAGTAATAAAGGGCGTATTGCACGCCCTATTATTTTCAAGAAATGTGCTAAGTTATCGACTAAATTTAGCCGCACTTTTATAAATGTTTCACTCTCCGTTTCACTTCTTCTTGTTTTCCGGCATTAAATGGGCGGGCATCAGGGCTGCCTAGGTAGCCACATACGCGGCGAGTGACAGAAACTTTTGTGCTATCGTGATTGCCACATTTAGGGCAGACAAAACCTTTGCTGGTACATTCAAACTCGCCGGTGAAACCACATTCATAACATTCGTCAATCGGTGTGTTTGTGCCGTAGTAAGGTACGCGATCGTAGCTATAATCCCACACATCTTCCAATGCTTTTAAGTTGTGTTGAATATTTGGATATTCTCCGTAGCAAATAAAACCGCCGCTGGCGAGTGGGGGATATGCCATTTCGAAATCCAGTTTATCGTAAGGATTTACTTTCTTTTCTA # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 96666-96846 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEBD01000025.1 Haemophilus influenzae strain 39P1H1 N39P1H1_12_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 96666 37 100.0 34 ..................................... GATTTACGACCACCTTTATTTTGAGTTTGACGTA 96737 37 100.0 36 ..................................... TTTACCTTGTAAAGTTAAGTTAATGGTATTTAATTT 96810 37 94.6 0 ................................A...T | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 98.2 36 GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAAAC # Left flank : TTTGCTTTCTTGATTGATGTTTTCAAATAAGCTAAACAATTTTAGATTGTCTTGAGTTTCACTTTTTTTGCCTAAAACAATGTTTTCAGCTTGGGGTAAAAAAGAAGATATATCGATTGATTGAATAGGAAAAGAAGGCAGAGAGAAATGATGCTTTTCTGCGAGTTGCTTTAAATAATGATTCCATACAGAAAATGCAAGAGAAATTGTGTCTGACATAATTGCTCCATTTAATGAAAACTTGAATGAAGTATAAGCAAATTTTGAAAAATTGTCAGCAAATACAAATTTGTAAAATTTATTTTTATTGTAGCGAGGACTGGTGCATCTGAAAAACTCTGTTAAAATACACCGCACTTTTGACTGATTTTTGAAAAAATAAGAATGATAAAAATTGTTCAATATTTAATCAAATCAATACCTAACTCTTCAGGCATCAGAAAAAGTTGGGAAGTGGCTCGGGGAAGCCTTGCTACACAAGGCTTGAATACCCCGCTGCA # Right flank : TTAAGTTTTTACTTCTATCTTAAAATTATTGCTAACTTTGGCATTCCTAAAAATCTCCGCTAAAATAACCGCACTTTTTCTTATCCTCGAGGAAAACAATATGTCAGATATTCTCAATAACCTCATTCATCTTCTTAAACTTGAAAAAATTGATGATTTAATCTTTCGTGGTGAAAGCCAAGATTTAGGTTTTCGCCAAGTATTTGGTGGGCAAGTTGTGGCTCAAGCGTTATCTGCGGCAATGCAGGTGGCGCCAGAAGATCGTATTTTACATTCTTGTCATGCCTATTTTCTTGCTCCGGGAGACAGCCAATATCCAATTATTTACGATGTGGAAACCTTGCGTGAAGGGCGTAACTTTTCTGCATTACGCGTAAAAGCCATTCAACATAAAAATACCATTTGCCATGTAACTGCTTCTTTCCAAGTGCCGGAAAAAGGTTTTGAACATCAAAATACGATGCCAAATGCTGGCGCGCCTGAAGACTTTACAGATGAAA # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //