Array 1 1052126-1054775 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP074087.1 Klebsiella pneumoniae subsp. pneumoniae strain MRSN752165 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1052126 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 1052187 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 1052248 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 1052309 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 1052371 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 1052432 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 1052493 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 1052554 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 1052615 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 1052676 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 1052737 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 1052798 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 1052859 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 1052920 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 1052981 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 1053042 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 1053103 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 1053164 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 1053225 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 1053286 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 1053347 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 1053408 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 1053469 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 1053530 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 1053591 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 1053652 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 1053713 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 1053774 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 1053835 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 1053896 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 1053957 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 1054018 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 1054079 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 1054140 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 1054201 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 1054262 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 1054323 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 1054384 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 1054445 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 1054506 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 1054567 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 1054628 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 1054689 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 1054747 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 32169-33171 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP074088.1 Klebsiella pneumoniae subsp. pneumoniae strain MRSN752165 plasmid pMR0819-ARMA, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32169 29 100.0 32 ............................. CAACCTCAATTCCTAATGGCTGTCTAAGGAAA 32230 29 100.0 32 ............................. CAGGGTTTGCCCTTTTGCACCGCGCAGCGGTC 32291 29 96.6 32 ............A................ AGCAACGTTTCCGGATTATATGGCTGGAACGT 32352 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 32413 29 100.0 32 ............................. TGGTGTTGTCCACGGTCACCCGCTGGCTGGAA 32474 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 32535 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 32596 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 32657 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 32718 29 93.1 32 ............CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 32779 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 32840 29 93.1 32 ............CA............... CAGCGTCTGAACGGACGAAACATCCCTGTTGA 32901 28 93.1 32 ..........-..C............... CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 32961 29 93.1 32 ............CA............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 33022 29 96.6 32 ..............A.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 33083 29 89.7 32 ............CA...........A... CACTACCAGATCCGAATGGACACCCGTAATGA 33144 28 82.8 0 ............CAC........-....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 94.9 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTGCGCCGGGAGACCGGTTAGAGATCAAGGGGTGAAAGTCCCCGACCATTGAAGGACCAGCAATCCACAAGGTCCCCGAGTCATGCGTTGCATACCGCGAGGTATGGGGCGAAGCGTTGACAGGGGTGTTGACAGGCCAGCCATTGAGCCACGAAATGTATATTAA # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-30] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //