Array 1 114820-115327 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEWT01000003.1 Ignatzschineria cameli strain UAE-HKU60 mira_70xPW3575_c3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 114820 28 96.4 32 A........................... CTAAGCGGTGTAAGGATTAATGATTTAAAAGA 114880 28 96.4 32 A........................... TGTATCTACAATTGCGCATCTCTTTAAAGCAT 114940 28 100.0 32 ............................ TTATTTTTAGCGCCACCCATCACCCCAACTCT 115000 28 100.0 32 ............................ TTGGAAGTTAAAATCCCCGCTTTCAGACTGAA 115060 28 100.0 32 ............................ TATTATCGCCGCTCCCAATACAGGGAGAAGCT 115120 28 100.0 32 ............................ TGTTTCTTGACTGTGAATCTATTGTAGCTAAT 115180 28 100.0 32 ............................ TGAAGGAGACTCAACATCATCAAAGCCGGCTT 115240 28 100.0 32 ............................ AAATTTGAACGATTTAACTTTTTAGGTAGTTA 115300 28 96.4 0 .........................G.. | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TCTCTTCAGGACAGCCAATCATCACCCATATTGCCTTAAAGCCAACCTCAAGCTTACGTCTCGAAGGTCGCACTGTCGATACTGAGGGAAATGAGACTTCGGTCATTACCAAAGGTCGACACGATCCTTGTGTTGGAATCCGTGCAACACCCATTGCTGAAGCAATGTTAGCGATCACTCTACTCGATCATGCCCTTCGCCATCGCGGACAAACAGGAAGATAATACTCTTCTTAAAATCACTTGATGGACAATTGAAAATCAATTAGGCTTCAATAGAAGCAGATATTCATTCACCATCTAAAAAAAATTATAAAAGTAACTATACAAAAAAGGATTAATCTGCTTATCGCTTACTCATCCTTTTTTAACCTTTATTTTAAGCTCTTTAAAAAATTAAACTAAAATCAATGAGTTAGATAAAAGAGGAAAATAATAGGTTTTAAGGAGCAAACAACCCTAAACTTCGATTTTTCCTCTCTTTTAACGTTTTAACTCACT # Right flank : ATATTTTCCTCTGGAAGGAACTATTCACTATTCAATTGCTATTCACCGCCACATAAGTGGCTTGAAGATATTAGATAATCAAGTAGGATTAATTAATTTCAAATAGATAAATTTCAAATAGATAAACTTCTCTATAAAAATAAAAAAGATCCTAAAATCAATCTCTAATAGATCTCTAATATAGTATTAATGCCCTAATAATCATAAGGCTGATAGAATCGGGATATTGACCTCATGAGTTCATTACTCTAAGGTGAAAGAGATAATATTATAGGGATAGAGAGAAATGATCAGAAACTTCAAGATTCGCAGCCTCTTTTTAATGCTTCTTCTACTCTTTTCGATGGGACTTTCCCCTTTAATGGCGGAAGATACACCGATCGAAGAGCGTACCGAAAAACTCAATGATATTGAATTAAAACTTGAGGATATTCTTGCAAGAAAGAAATCCCTTCAAAGTCAGCTCAAAGATAAAGCGCTCTCGGAAGAGGAGGTCGCTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 419523-408458 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEWT01000001.1 Ignatzschineria cameli strain UAE-HKU60 mira_70xPW3575_c1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 419522 28 100.0 32 ............................ TAAAATTTTAAATTTAACAAGCTCCATCAAAC 419462 28 100.0 32 ............................ AGATGAGCATCATGACTAAAGTCAGGATTCTC 419402 28 100.0 32 ............................ AAACTGATCATATTAGAGAATCAAGGGGATTT 419342 28 100.0 32 ............................ CTTTATATATTTTTTTTGGAAAAGTGGTCGGA 419282 28 100.0 32 ............................ TTTTACCTGAGTCAAATATAGCTTCTCCTGTA 419222 28 100.0 31 ............................ GCGAGTTTGGGCACTGAAGCATTGAAATTTT 419163 28 100.0 32 ............................ AACATTTTGAATGTTGAATCGGCTGTAATGCC 419103 28 100.0 32 ............................ ATTGTGGCCAACATATACACCGGGAATAACCA 419043 28 100.0 32 ............................ TCTTGTGCTGAAATGATCGCATTTGCGAAAGC 418983 28 100.0 32 ............................ AGCCGGCTCTCTTTTTTTAGGTGGAAAATATG 418923 28 100.0 32 ............................ GATTGCAAACGATTTACGCGGTATCTCAATCA 418863 28 100.0 32 ............................ ATTTCAGGTCCTACCGTTGATGGCCGCAATAT 418803 28 100.0 32 ............................ ATACAGGCAGGAGGGGCTATAATTTGCCCCCT 418743 28 100.0 32 ............................ GAAAAGAAAGAAACATTACAGAATATAAAAGA 418683 28 100.0 32 ............................ ATATAACAAGGAAAATGTAGTCATATAACAAG 418623 28 100.0 32 ............................ ACTGGTCAGCCGGGCGCTTGATACCGTCGTTC 418563 28 100.0 32 ............................ TTGTCATGTGGGCATTCTGCCCCCCTGAACCC 418503 28 100.0 32 ............................ TGCACAGCATCACCTTTGCCCTTATAGGTGTT 418443 28 100.0 32 ............................ AGATGCTCGCATCGTCGAAACAGACGAAGAGA 418383 28 100.0 32 ............................ GCACCGAGCGGGCCGACACCGCCCTAGCCATC 418323 28 100.0 32 ............................ CTGACTCGCTGTATCTCGGCGTTGATTCGTGC 418263 28 100.0 32 ............................ ATCCCGTGATCATCTTAAAGCGACGCGCATCA 418203 28 100.0 32 ............................ CTGCACTCTAATATCCGCCGCCGTTCCGTATT 418143 28 100.0 32 ............................ AAATTAATAGACGCTTTGCAGGAGCGTATGTG 418083 28 100.0 32 ............................ TTATCCGCATAGCTTTTACCATCAGCATCATA 418023 28 100.0 32 ............................ CGGAAAATACGGGATCGGCAAGTACAACACAT 417963 28 100.0 32 ............................ TGTTAGTGCGTTACCGCCAAGTTTAAGAGCTT 417903 28 100.0 32 ............................ ATCAGCGCCACACCGCCGGCAAACATCATTGA 417843 28 100.0 32 ............................ CTCGGCATCAGTTACTCACAGTTCAACCGATA 417783 28 100.0 32 ............................ CTCATTTGTTGAGACGATCGATGCAAAGCTCT 417723 28 100.0 32 ............................ ACCACGATTACCGCGTATTCTGAGAGCAATCT 417663 28 100.0 32 ............................ ACCCCCTCTTTTTTGAATGAGGAGGATGATTT 417603 28 100.0 32 ............................ TGTTGCGATAGCTGTTGTTGCGCCTAAACTTG 417543 28 100.0 32 ............................ GTGTAAGTACCTGATCCGCGCGGGCCATTGAT 417483 28 100.0 32 ............................ GTTCACGATCTCGCAAGAGTCAGGGAATGGAA 417423 28 100.0 32 ............................ ATACTGCATTTGTTTATCATTATGTTCTCTGA 417363 28 100.0 32 ............................ TTTGTAGCCATACTTCCGAGCTGTGTTGAGGG 417303 28 100.0 32 ............................ TAACGGCAAAGGGCATGGGTTTTAGCCATGCC 417243 28 100.0 32 ............................ TATCGGTTTGAAAGAATCATCACTTCTCTCAA 417183 28 100.0 32 ............................ ATTTTGGGCGATGATGGAGACTGTCCACAGGC 417123 28 100.0 32 ............................ ACTCGCCGTTTTCAACTTTGCCGAGTATCCAT 417063 28 100.0 32 ............................ AGTTAGCACTGTTTCAGCGTGGAAAAACAATA 417003 28 100.0 32 ............................ TATAATTGCGACTGTTTTTAGAGAGACAGATA 416943 28 100.0 32 ............................ TAATCCATCTTACGGCATGGCTACTATGCACG 416883 28 100.0 32 ............................ TTCTTGCCGTATGGTGTGGCTTTCTGGTCGAT 416823 28 100.0 32 ............................ GTTAAACGAGCGGCGATGGCTTCGGGGGTTTC 416763 28 100.0 32 ............................ GCGTGTGAGCGGCTGGAAGTTAAATATGGCTT 416703 28 100.0 32 ............................ GAAATAAACAAAGATTTTTTTGATGAGTTAAA 416643 28 100.0 32 ............................ TTGATTTTTTAGAAGAGATATCGAAAAAAATA 416583 28 100.0 32 ............................ TGAAGGTTGGGGAGAAGCGTGGCAAGATCGTA 416523 28 100.0 32 ............................ TACCGTTTGCTCTAACTTTCGAGATGGATTGA 416463 28 100.0 32 ............................ TAAAATTGGCGACATGAAGAGCCAAGAGCAGG 416403 28 100.0 32 ............................ GCGCTTCGGGTTCTGCAAATGCTTTGGTTGAA 416343 28 100.0 32 ............................ TTACTCCTAACCCAAAAGCCCCCGTTTTCATC 416283 28 100.0 32 ............................ ACACTCGACAAATCAGGCTTTCTCCGCGCTTC 416223 28 100.0 32 ............................ GTTACATTACAAGAGCCGATCGAAATTGCAGG 416163 28 100.0 32 ............................ AAGATGGTGGCGAAGGAGTCGTCAACAAATAT 416103 28 100.0 32 ............................ AGTGGGGTACTGTCGTTTGCACCAAATGAAGT 416043 28 100.0 32 ............................ GATCACCGCCCCGCGGAGTGTGCGCCGGTATC 415983 28 100.0 32 ............................ ACCTGCACCCCTGCCACGTGGCGAACGGACAA 415923 28 100.0 32 ............................ TATCGAACGGCTGATGGTGGCATGGTCATTGA 415863 28 100.0 32 ............................ TTCTTGCCGTATGGTGTGGCTTTCTGGTCGAT 415803 28 100.0 32 ............................ GTTAAACGAGCGGCGATGGCTTCGGGGGTTTC 415743 28 100.0 32 ............................ GCGTGTGAGCGGCTGGAAGTTAAATATGGCTT 415683 28 100.0 32 ............................ TTGAAAGAGGGCGCTACGCCCCCCTTTACCCC 415623 28 100.0 32 ............................ TTACGACAATAAAGAGGTCATCATCGGTTACG 415563 28 100.0 32 ............................ TCTGAAATTTCCTTTAAGCCATCAGAACCTGA 415503 28 100.0 32 ............................ TATTGCTCTCCATCTATCCATGTATGACATTT 415443 28 100.0 32 ............................ ATCAGGTGGGGGGATTGAAGATTCCCCCCACC 415383 28 100.0 32 ............................ CTTGACGCTTTTGGAATGACATACCCTGTCCA 415323 28 100.0 32 ............................ CCCCTCTGGCAAGCGCCGAGCGTCCGCACTGA 415263 28 100.0 32 ............................ CGCTTCGCTTGCCTCCCCCACGTTCGCCACGT 415203 28 100.0 32 ............................ CTGTAGAAGTTAACATTATCGCTAAATCTTAT 415143 28 100.0 32 ............................ TCGTAAAATGATGTCTGTAGGAAGCTTCATTA 415083 28 100.0 32 ............................ GGCGAATCATATTGAAGAGATGGCCGCAAATT 415023 28 100.0 32 ............................ ATTTAACCAGCGATACTCTACTTTGGGAGTGA 414963 28 100.0 32 ............................ TAATTGGAGATGTTATGTCATTAGTTGCAATC 414903 28 100.0 32 ............................ GAAAGCGCTTCTGTCCTTTATTTTTCTTCGAC 414843 28 100.0 32 ............................ TCCTGGATCATCAGGATCATTCACGTAACCGC 414783 28 100.0 32 ............................ TTTAAAATTAATTTTTCCATCGGCTCATTTGA 414723 28 100.0 32 ............................ TTATCAATGGCTTTTACGGCTTCTTTCTTGTT 414663 28 100.0 32 ............................ AGATAGAGCAATCCGCTTCATGATCAGTCATT 414603 28 100.0 32 ............................ TCTTCAAAGCGATTCATTATTTCCTCTTTCTC 414543 28 100.0 32 ............................ TTCACGCTGTCGATCTTTTCCCATGAGGTAAT 414483 28 100.0 32 ............................ TGGTTATGAGTGGCAAGATCAAAGACCGGCAA 414423 28 100.0 32 ............................ TTGCTCTTTTTAATCTTTTATCTAAATCTTCA 414363 28 100.0 32 ............................ TTGTGGGAATCCAGAAGGCAAACACAACCAGA 414303 28 100.0 32 ............................ TCCGTTAAATTTTCTTCAATCCAATCAATAGT 414243 28 100.0 32 ............................ CTTTTTGGATACCTCTCTTAATTCCCCCTCGT 414183 28 100.0 32 ............................ TGATGGCGATAAGAAAATGTAATGTAGGAATG 414123 28 100.0 32 ............................ GCAAGAAAAAGTAAGCTACCACCGCAGGGGGG 414063 28 100.0 32 ............................ TTTTATGGAGAAAAATCCAAAGGCTCGTTGGA 414003 28 100.0 32 ............................ TTCAGATATTTTTTCAGAAAATAGCGTTGTAA 413943 28 100.0 32 ............................ ACTCATAACCATATTGGTAACCGCCTTATCAA 413883 28 100.0 32 ............................ TTTTTAGCAATTCGATTCCCTTGATTCATGAC 413823 28 100.0 32 ............................ AATAGAGTGAATTAATCCAGGAGACAGCTTCT 413763 28 100.0 32 ............................ TGAACCACCAAAAGGGCCAGGTCCAAGATGAA 413703 28 100.0 32 ............................ TCCGGCATTTTCCGGAGCAATACCCATGAAGA 413643 28 100.0 32 ............................ AATAGAAAACTTAGGCGATCAATTAACTAAAA 413583 28 100.0 32 ............................ ACCAATTAATGAATCAACTTTAATGGAATTAC 413523 28 100.0 32 ............................ AACAAAACCGATCTTATTAGCGGCAGCTATAG 413463 28 100.0 32 ............................ AAATCAAGGTTTAGGCTTAGGAGTACGAGAAC 413403 28 100.0 32 ............................ CGCAATTTCCGCCAATCTGCCAAAAAATACGA 413343 28 100.0 32 ............................ AACAAAGTGGTTCGCTCGAAGATTGAGAATAA 413283 28 100.0 32 ............................ TCATTTGTATGATGCTCTCTTGTCATATGCAG 413223 28 100.0 32 ............................ ATTCCGCCATTTTCCCCCTCATTTCCTTTATC 413163 28 100.0 32 ............................ TTAACTTCCAGTCTGTTTTGATCCTGCTCTTC 413103 28 100.0 32 ............................ ATATTTTTCTGCTTCTTTTTCATAATTTTTCT 413043 28 100.0 32 ............................ AACAGCCCATTTTGCGAGCATAGCCGCCGCAC 412983 28 100.0 32 ............................ TGTTGTTTATAAACAAATGCCAAACAAAGTAG 412923 28 100.0 32 ............................ CTTCTCCAACTTTATAAGTAGTCTTACATTTT 412863 28 100.0 32 ............................ ATTTTCAGGATTAACCGCCACATAGTTGGGCG 412803 28 100.0 32 ............................ TTGAAACGAAAAGAGGAAGAATAAAATCATGG 412743 28 100.0 32 ............................ TATTCCGCCATTTTCCCCCTCATTTCCTTTAT 412683 28 100.0 32 ............................ ATCTAAACCACTCTCCATTGCTTCAATGAAGA 412623 28 100.0 32 ............................ ATTTGCAGGACAACTTCACAAAATATAAGTTT 412563 28 100.0 32 ............................ CTTGACCGTGATCTATCTTCATCATCTGTCAA 412503 28 100.0 32 ............................ AACCTACGGTTGGAAAGGTACGGCAAATAACC 412443 28 100.0 32 ............................ AATCGGAATTAGCGGAATACATCGGTATGACT 412383 28 100.0 32 ............................ TACCTTTTTTCTCTCTCTCTTCTGTATCTGTA 412323 28 100.0 32 ............................ CCCCGGCATGTTTTAGCTTTTAAGATTTTCGA 412263 28 100.0 32 ............................ TTGTAAATTTCCCCATCTAATCGAATATTTCT 412203 28 100.0 32 ............................ ATTACGATTCATTATTGAATCGTTTGCTATCT 412143 28 100.0 32 ............................ ACGCAATTGAGTAGTCTTCTTTATCAAGACCT 412083 28 100.0 32 ............................ CATTTTTCAAACTCTTTAAAATACTGTAAATA 412023 28 100.0 32 ............................ AGTTGCAGACTGGGCAATGACGCAATTTACAA 411963 28 100.0 32 ............................ TTGCTTTGATCGGTGCGCTGGTCGGTGCAGTG 411903 28 100.0 32 ............................ AGCTTGATCGACTCTTTGGGTTAAAGATCACC 411843 28 100.0 32 ............................ GAATCTTGCTCGACATCCCTGCATTGTCTTGC 411783 28 100.0 32 ............................ GCTCGTCGATGGTAAACCCCTTTATCCAGGAT 411723 28 100.0 32 ............................ TTGGAGGGAAATAACAGAGCATAAAATAAAAA 411663 28 100.0 32 ............................ TCTGTTTTTTGGCGATAAGCGTCCTCTTTATC 411603 28 100.0 32 ............................ TCGAAGAGCTTAAAAAGAACCTTAAAAAAGTA 411543 28 100.0 32 ............................ AATAACGAGTACAATAGGATTCGCCAGAACAG 411483 28 100.0 32 ............................ AATCACTAATGCATCAAGGTTTGCATAATCAC 411423 28 100.0 32 ............................ TTGTAAGATGATTCCCTCTTTTATTAAACGTT 411363 28 96.4 32 .............T.............. TATTGCTTGAATTTCAAATACAGACTCTTCTA 411303 28 92.9 32 .............T......T....... GATTTGAAAAAGGTTTTAATAGAAAGAGATAA 411243 28 96.4 32 .............T.............. ATAAAAAATCCAAGCGGTGGAAGAAACATAAG 411183 28 96.4 32 .............T.............. TTTAACGAAAGCCTCTGGACGGTAGACTGCAA 411123 28 92.9 32 .............T...T.......... CTTTACCCCTTAGACGCTCGGCGCTTGCCAGA 411063 28 96.4 32 .............T.............. TTTTTGTGCAGCTGCTTCTGCGCTCTTAATAA 411003 28 92.9 32 ............GT.............. AAATCGATTGCGGATATGCTCCATAGGTGAGC 410943 28 96.4 32 .............T.............. TGTAAGCGCAGCAGTAACACGAAAGCCCATCT 410883 28 96.4 32 .............T.............. ATGCTGGGTTATCTGTCCAACCTAATTTGAAT 410823 28 96.4 32 .............T.............. TATTTCATACACGAGAACTATAAATAGAGGTG 410763 28 96.4 32 .............T.............. GCAACTGTCTTCCCGCCGATCTGCTGCAAAGA 410703 28 96.4 32 .............T.............. TCGAGAGCATCATAATACTGCCTCTCGCTTAT 410643 28 96.4 32 .............T.............. TTGATGCTCTCTGACTTAGCTTGGTGATCTGT 410583 28 96.4 32 .............T.............. TTAAGGTAGGCCAGAAAACCTCTTATAGTATC 410523 28 96.4 32 .............T.............. GCCCCCGACACTGTCGGTAATCTCATTATAGT 410463 28 96.4 32 .............T.............. AAGTGGCGGAAGAAATATAAGACTAAAAGGGG 410403 28 96.4 32 .............T.............. AAATCGATTGCGGATATGCTCCATAGGTGAGC 410343 28 96.4 32 .............T.............. TTGAGTCGGCGTATGCGCATAGACTTCTGCAT 410283 27 92.9 32 .............T...-.......... TGTAAGCGCAGCAGTAACACGAAAGCCCATCT 410224 28 96.4 32 .............T.............. ATGCTGGGTTATCTGTCCAACCTAATTTGAAT 410164 28 100.0 32 ............................ TAAATCTTCTATTGGAACATTAGGAACAGTAA 410104 28 100.0 32 ............................ TGATGTTTTAATTCAAAAGAACTATGATCCGA 410044 28 100.0 32 ............................ ATATGCTTTAAAATCAGAATCTGGCCAAATTG 409984 28 100.0 32 ............................ TGCCAAAATTTAAGCCATTTTTCCTGACTTAA 409924 28 100.0 32 ............................ TTTATCTGTATGTTCAATCCAAGCTATCGAGT 409864 28 100.0 32 ............................ AACAGAATATTTTTTACCACTCTCCTTCAGCT 409804 28 100.0 32 ............................ GTTTGAATCGATAGAAGATGATGAAATCTTTC 409744 28 100.0 32 ............................ TCTATAAATCCGTCGCTGTCTTCAAATTCTGA 409684 28 100.0 32 ............................ GGCAAAATCATTTCTCTCGATCATTTCGACAA 409624 28 100.0 32 ............................ GTTTTTATCAATAATTCTTACCCAATAGTAGT 409564 28 100.0 32 ............................ ATCTTGAGTGAACCAGCTCAATCTTATCTGGT 409504 28 100.0 32 ............................ AGGATAAAAAAGAGGATCGCTCAAAAGCTCAA 409444 28 100.0 32 ............................ CGATTCAATTTTGCCGATGACTTCTTCTAGCA 409384 28 100.0 32 ............................ TTCGGGGTTCGATAAATGAACATTCGGCGTGA 409324 28 100.0 32 ............................ AATAAATGGGGAACAGTTTAAATAAAGGATTA 409264 28 100.0 32 ............................ TTTTACGATATAGCGCACTTCCACGCCTGAAT 409204 28 100.0 32 ............................ TCCTGCCTGTATGGATAACCATATCTCTATGA 409144 28 100.0 32 ............................ TTACTTTAGAATCATCGTTAAAAAAACAGATG 409084 28 100.0 32 ............................ CCTACCGCCGCTAAAACCCCACCAACAATAAA 409024 28 100.0 32 ............................ AAACAATATGAGCCTCTGGGATAAGTGGGAAG 408964 28 100.0 32 ............................ CTTTGCAAAGCACATGACTTCTAAAGATACGT 408904 28 100.0 32 ............................ GCGCGCTGTGTCTCCGTGCTAGTACGCTGGTA 408844 28 100.0 32 ............................ TTGCACTCGAATATCGGCGGCGATACCTAGCA 408784 28 100.0 32 ............................ TGCCGGATTGATCGGCTGAAAAGTCACTTCTT 408724 28 100.0 32 ............................ TGAGCATGTTCATAGAGCAAAATATGATTGTT 408664 28 100.0 32 ............................ TTTATAGAGAGAGTTATACCTAGCTTTCTTTC 408604 28 92.9 32 .............T.............G TGCGATCCCCGTTAACATCATCATTACGATTG 408544 28 89.3 32 ...........T.T.............G TAAAGACTCGGTTCGAGAAATATCTCACATAA 408484 27 85.7 0 ..................A.T...-..G | ========== ====== ====== ====== ============================ ================================ ================== 185 28 99.4 32 GTTAACCGCCGCACAGGCGGCTTAGAAA # Left flank : ATTCGTGATTATGCTTTAGTAACTTCCATAAAAAGAGTTCCAGATGAGGTGGATGATTATGTCATTTTTTCAAGATGGAGACCCCAATCAATTAGTAAAAGCCAAGTGAGACGTTATCAAAAGCGTCATCCTGAAAAGTGGAGTGATGCTGTTTGTGAATATGTTTTAACTGAGCGTTCTTTACCTTTTGGCATTCCGCACTTTAAAGTGAAAAGTGGAAGTACAGGACAGACTTTTACAATTTGGGTAAAACGACACTCTTGGGATAAGCGCAATCAACGTCATGGAGTATTCGATAGTTATGGCTTGAGTAAAACTGCTGCTGTTCCTATTTTTTAAAAAAGAATGCACCTTTCTGATTAGATAATAACCCTAATTTTTCGTTAAGATGTAACTTATTGATTTTTAATCATGAAAAGTAATCTAGAAAAATTAGGGTTTTTTTATCCCTGTTCTTTAACAATTTGGATATAATGAGCGTTCTAGAAGATTTATCTCTA # Right flank : TTTCGGCGGAAAAGGAGTCCGTCGATGCTTTGGTACAGTAGCATTTGGGGCAAGTAGATAGAAAAAAGGCCGTTAATATAACGGCCTTCTTTTTAGGTTTAATCTGATATTTTTTATCAGAGATCAAGTCTTAATCAGCAATTAAATGATTAATGCTTGATTAGAATGGAGCGTCGATATCGACAACATCAACGAGTTTGATATTAACGAACTCTTTAAGACCTAAGTCGATCAATTCACGACCATATCCTGAACGGCGGATACCACCGAATGGGAGGTCTGCTTTAACCATGGTTGGGTGGTTAACAAATACCATTCCTGTTGAGATTTGGTTTGCAACACGACGGCCACGCTCATTATCTGAAGTGAAGACTGATCCACCTAAACCAAATGGTGAGTCATTAGCGATGCGGATTGCATCAGCTTCATCTTCTGCTTTGATAATCATCGATACAGGACCGAAGAACTCTTGGTAGTATGCAGGGTTATCAGGTGTTACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACCGCCGCACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //