Array 1 421262-420367 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDPF01000006.1 Haemophilus haemolyticus strain 65151 B Hi-4 Contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 421261 32 100.0 34 ................................ TCAGAGCGTACAACTCAATATTTGAATAACATAG 421195 32 100.0 34 ................................ GCCTGCAGCTAAATGATTGGCTCTTACTGCTCCA 421129 32 100.0 34 ................................ TTTGTTTTTCTGAATCGAATAGCCACACAATCCT 421063 32 100.0 34 ................................ ACCAGGTGGAATCCACTCAAATGATTTGGAACCG 420997 32 100.0 36 ................................ ATCTGAGTCTCACCGTACTCGAACTCACCTGCCTCG 420929 32 100.0 34 ................................ CATTTGGTCGCGCATTGCAGCTAACACTTCATCA 420863 32 100.0 34 ................................ TTGTGTTGCCTGCGGTGTATAGCGAAAAGTCATC 420797 32 100.0 34 ................................ AATTAGCCTTGATTTTATCAAGAAAGTAGGTGGT 420731 32 100.0 35 ................................ CCCAATCTCTCGCACTCTGTTGCAACCGTGCTATG 420664 32 100.0 34 ................................ TATCTCCATTAAAACAATAGGCGCTCACTTGGAA 420598 32 100.0 35 ................................ TCGGTGATATTGTCGTCAAACTTCAAGCGTTTCAG 420531 32 100.0 34 ................................ AAGTTGCCGAAAAATGTGTGTTGAATTATGGCAA 420465 32 100.0 35 ................................ CACGCTTGTGCCTCTTTGGTTGGATCAATCCATGG 420398 32 93.8 0 ................A....C.......... | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 99.6 34 GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Left flank : TTGATGAGATAAACTATGTTAATGCTGATTACTTACGACATTTCTTTTGATGATCCAAATGGTCAAGCGCGATTACGCCGCATAGCAAAACATTGCTTAGATTACGGCGTGCGGGCGCAATATTCGGTCTTTGAATGCGATGTCACGCCTGACCAGTGGATCATGTTGAAAAACAAACTGTTGGAAACCTACGACCCCACATGTGACAGTTTGCGTTTTTACCATTTGGGCAGTAAGTGGCGTAATAAAGTGGAGCATCATGGGGCAAAACCGGCAGTAGATGTATTTAAAGACTTGCTTGTCATTTAGTTCGCTAACCTGTTGTTCTCATTAAAACCCTGATGGGATAGCGATCTTTATTTTCTTTAACAATTTGGATGAATTAATCTATTTGTATAACGGCGGTATGGCCGTTATACTTACCAAACTCCTTATCATAAAATCAGTTAGCGAAATACAGTGTTTAATTCGCTGATTTTTCTTACTTTTTTATGTAGGGA # Right flank : TGTAATTACAATCAAATTACCGTCATTAATACGGAAGCTGCGTATTTAAGTAAGGATGAAAGAAGATAAAACGACTATGTCAGTAAATGGATAACTTAACATTTAAATACAAAAGAGCGGTCAAAATATAATGATTTTTGGCCGCTCTTGTTTATACGATTTGAATTCAACTAATTTAAAATATTAACCTGCTCTAAAAATTCTTCTTCTGTTAATACTGCAATATTTAGTTCCTGCGCTTTGGCGAGTTTAGAGCCAGCAGCGTCGCCTGCGATGACAAAGTCCGTTTTACTGGAAACAGAACCACTTACTTTTGCGCCTAGCTGCTGTAGTAATACTTTTGCTTCGTTGCGACCCATTTGAGTGAGGGTGCCAGTGAGGACGACGGTTTTATCTTTGAATAAGTTTTCACTGGCTTCTTTTACTTCCACGGTTTCCCAATGTACGCCTTGTGCGATTAAATCATCAACAACGGCAACATTATGCGCTTCACGCCAGAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.40,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 472871-472118 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDPF01000001.1 Haemophilus haemolyticus strain 65151 B Hi-4 Contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 472870 37 100.0 34 ..................................... ATCGTCGGCGCATCAAATGTCTCCCGCTCACCAC 472799 37 100.0 33 ..................................... TCACTCGAATGCCGAAATACGTCCGCAAGAAAT 472729 37 100.0 36 ..................................... ACATTCTCGTTATTCCAGCGTTCAGATTGTCTTACT 472656 37 100.0 36 ..................................... GGTTGTTTTCGATTTTGTTGATTAAGTTTTTCATGT 472583 37 100.0 33 ..................................... TACTCTACTTCTTCAGCTAAAATTGTATCTTCT 472513 37 100.0 33 ..................................... TTTAGCCACTCTTGAAAATCTGCTGGTCTTTGA 472443 37 100.0 36 ..................................... TTCTATAACTAGATCCGATTTGATTATATTTTGAAA 472370 37 100.0 33 ..................................... ACACTGGATCTTTATAGTTCACTTTTGGGTTTA 472300 37 100.0 36 ..................................... TCTAAGGTTGTCTTCTGATGTTCAGACATGCCCATC 472227 37 100.0 37 ..................................... GATGTTGTCCACATCATAGCTTGTGGCCTTAGATTAT 472153 36 89.2 0 ......-.............AC..............T | ========== ====== ====== ====== ===================================== ===================================== ================== 11 37 99.0 35 GTCGAAAGACATTGCCCTGTTTCAAAGGGATTGAGAC # Left flank : CGGATATTCCTTTGCATATTTTAGAATTAGCAGGGTTTCAACCTTGTAAGGGATGTTGCAAGCATTTATTAGCCGAGAGGTAAATAAATGCTGAAACCCCTATTATTTTTGACCTCACTTTATTTGAAAGTGTTAGGGTAACATCTAAATCCTCAACTGAAATTTACAAGCCTTACAAAATCCCCATCAATTGATTTCTGTATATCACATATCATTTTCAATTTCTTGCCTTAAGGCATATTCTTTATCTGGTTTATATTTTAATAAATTATTTCAATAAGTTATTTTCAATTTTGCCAATAAGGCTAGACATTCTAGAGCTAGAAAAAATAAAAAAATAACGGTAAAATAGACCGCACTTTCGATTGGTTTAGAAAGGAACAAAATATGCAACCTGCTTATTATTTGCTCAAATTAAGAGCCAGCTCCTTAACCTTCCCAAAAAATTGGGAAGTGGGTCTGAAAGGCCGCATGACTCCTGCCTCCAGCATACCGCTGCA # Right flank : AGATAGAGATTTATTATTGATAAAAATATCGAAAAGCTAATAGGAGTAATAAAGGGCGTATTGCACGCCCTATTATTTTCAAGAAATGTACTAAGTTATCGGCTAAATTTAGCCGAACTTTTATAAATGTTTCACTCTCCGCTTCACTTCTTCCTGTTTTCCCGCATTAAATGGGCGGGCATCAGGGCTACCTAGATAGCCACATACGCGGCGAGTGACAGAAACTTTTGTGCTATCGTGATTGCCACATTTAGGGCAAACAAAGCCTTTACTAGTACATTCAAATTCGCCAGTGAAACCACATTCATAACATTCGTCAATCGGTGTGTTTGTTCCGTAGTAAGGCACGCGATCGTAGCTATAATCCCACACATCTTCCAATGCTTTTAAGTTGTGTTGAATATTTGGATATTCACCGTAGCAAATAAAACCGCCACTAGCGAGTGGGGGATATGCCATTTCGAAATCTAGTTTATCGTAAGGATTCACTTTCTTTTCTA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTTCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 477371-476904 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDPF01000001.1 Haemophilus haemolyticus strain 65151 B Hi-4 Contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 477370 37 100.0 37 ..................................... AAGGTATTAACGGTTTAGTTAAAGCAGGTTCTATTTT 477296 37 100.0 33 ..................................... TCCAAAGCGTTTTTAATTCGTCGTAACCTTTAG 477226 37 100.0 33 ..................................... AAAACTCTACGCTTGAGCATTGATCATCACTAT 477156 37 97.3 34 ................C.................... AGTTCCGCCACACGCTTAAAAATTAAATCTTCAC 477085 37 97.3 37 ................C.................... ATTGATGCTGTAGTAGCTGTAGCTACTGAACGAACTG 477011 37 94.6 34 ............C...C.................... GAACGAATTGCGTTGTTGATACCAAACATAATGT 476940 37 75.7 0 ............C...C...CTA........GT.C.T | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 95.0 35 GTCGAAAGACATAGCCTTGCTCGAAAGGGATTGAGAC # Left flank : TATTATTTTCCAATTTTAGGAGTAAAATATGGCTCAATATTTAATAGGTTATGACATTTCAAATCCCAAAAGACTACAACGAATTTATCGTAAAATGACACATTATGCGACGCCAATTCAATACAGCATTTTTTTATTAGATGGCTCAGAGAAATTTCTCAAACAATGTTTGGCTGAAATTATGTTAATCTTCAATAAGAAAGAGGATGATTTAAGAGTTTATCCTTTACCTACCAATACAACACAATGGCGACTAGGAAAATCAAGTTTGCCAGAAGGTATTATTTGGACAGCCTTGCCAACAAGCTTGACATTATAATGCTAGAAAAAATCAAAAATAGAGGTAAAATAGGCCGCACTTTCGATTGGTTGAGAAAGGAACAAAATATGTAAATTGTTTATTATTTACTCAAATCAAGAGTCAACTCCTTAACCTTCCAAAAAAATTGGGAAGTGGGTCTGAAAGGCCGCATGATTCTTGCCTCCAGCATACCGCTGCA # Right flank : CGCTAAAGTGCGGTTAGTTTTCAATATAAATTGGAAATTGACCGCACTTTTTATTTCTGTTCATTTTTACAAATTTGTATTTTCGCCTTTCTATTTATGACTTTTCTATAATTCACTCCGTCAGTAATTGATTTTTAGCTCAGAGGATTGAGCGCTAATTTAGTTTGTTAAAAATCTATAAAGAGAAAATAGAGAATTAAGCAATTATTGGCATATAAAACAATTGTTCTAATTTAAAAATGTGAGGGAATTAAAATGGCTGGAATTAATAAAGTAATTATTATTGGTAACTTGGGGAATGCACCAGAAATTCGGGCGATGCAAAATGGTGATACGGTTGCTAATTTTAGTGTGGCAACATCTGAAAGCTGGGTGGATAAAAATACACAGGAAAAACGTGAAAATACCGAATGGCACCGTATTGTGCTTTATCGTCGATTGGCCGACATCGCAGGTCAATATTTACGAAAAGGATCGAAAGTTTATGTTGAGGGAAAACT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATAGCCTTGCTCGAAAGGGATTGAGAC # Alternate repeat : GTCGAAAGACATAGCCCTGCTCGAAAGGGATTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 489066-489456 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDPF01000001.1 Haemophilus haemolyticus strain 65151 B Hi-4 Contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 489066 37 100.0 36 ..................................... GTTCATCATTCCAACGATTAGATTGACGAACTAAGT 489139 37 100.0 35 ..................................... GCAACTGCTGGTTCAGCACTATCAAGGATAGTGAT 489211 37 100.0 34 ..................................... TTATGCTCAACGCCCCATTAACTAACGATTCACC 489282 37 97.3 34 ..................................G.. TAATACCATTTTTTCTTTTGACTTGCCCAAAAAC 489353 37 97.3 30 ..................................G.. TTATCAGGCCAAGGAGCGGACGTTGTCCAC 489420 37 94.6 0 ................................A...T | ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 98.2 34 GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAAAC # Left flank : TTTGCTTCCTTGATTGATGTTTTCAAATAAGCTAAACAATTTTAGATTGTCTTGAGTTTCACTTTTTTTACCTAAAACAATGTTTTCTGCTTGGGGTAAAAAAGAAGATATATCGATTGGTTGAATAGGAAAAGAAGGTAGAGAGAAATGATGCTGTTCTGCGAATTGCTTCAAATAATGATGCCATACAGAAAATGCAAGAGAAATCGTGTCTGACATAATTGCTCCATTTAATGAAAATTTGAATAAAGTATAATCAGATTTTGAAAAATTGTCAGCAAATACAAATTTGTAAAATTTATTTTTAGTGTAGTGAGGACTGGCGCATCTGAAAAACTCTGCTAAAATACACCGCACTTTTGGCTGATTTTTGAAAAAATAAGAATGATAAAAATCGTTCAATATTTAATCAAATCAATGCCCAACTATTCAAACATCAGAAAAGTTTGGGAAGTGGCTCTGGGAAGCCTTGCCACACAAGGCTCGAACACCCTGCTGCA # Right flank : TTAAGTTTTTTACTTCTATCTTAAAATTATTACTAGCTTTGGCATTCCTAAAAATCTCCGTTAAAATAACCGCACTTTTATCGTCTCTTCAAGGAAAGCAATATGTCCGATATTCTCAATAACCTCATTCATCTTCTTAAACTTGAAAAAATTGATGATTTAATCTTTCGTGGTGAAAGCCAAGATTTAGGTTTTCGCCAAGTATTTGGCGGGCAAGTTGTAGCTCAAGCATTATCAGCAGCAATGCAGGTGGCGCCAGAAGATCGCATTTTACATTCTTGTCATGCCTATTTTCTTGCCCCAGGAGACAGCCAATATCCGATTATTTACGATGTGGAAACCTTGCGTGAAGGGCGTAACTTTTCTGCATTACGCGTGAAAGCTATTCAACATAAAAATACAATTTGTCATGTAACTGCTTCTTTCCAAGTGCCGGAAAAAGGTTTTGAACATCAAAATACGATGCCAAATGTTGGCGAGCCGGAAGACTTTACGGATGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAAAC # Alternate repeat : GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //