Array 1 449125-451104 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECOG010000001.1 Salmonella enterica strain S63 S63_contig000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 449125 29 100.0 32 ............................. GATATGGGGCTTGATCTTGATTTATTTAATAC 449186 29 100.0 32 ............................. ACAAAAAAGACGAAACCAAAATCGACGCCGCG 449247 29 100.0 32 ............................. CCGTCATGGCGGATATTCGTCTGATTGGCGAC 449308 29 100.0 32 ............................. GGGATTGCGGGAATTAGTATTAAATCCGGCGT 449369 29 100.0 32 ............................. GAATTGCGGGAATTAATATTAAATCTGGCGTC 449430 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTGGTCGCCGC 449491 29 100.0 32 ............................. CCCACGCGGCACAGCTGGCAGAGGACGAAATG 449552 29 100.0 32 ............................. CGCTGGTGTACGACATCGCCGACATGATCAAA 449613 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 449674 29 100.0 32 ............................. TTGCGTCAGGTCGTCGTTTTTTGAGAACGCCA 449735 29 100.0 32 ............................. CTAAATAAAACCTGTAATTGCTCCCAATCGTA 449796 29 100.0 32 ............................. AGGGGCAGCTCCTGGTCGATGAGGTTCTTGAG 449857 29 100.0 32 ............................. CCGTCGGCCTGACAGCCACAGCAGTCAATACA 449918 29 96.6 32 ............................A TGCTGGTCACGCCCGGTTTAGCGGGTAAATTC 449979 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 450040 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 450101 29 100.0 32 ............................. TTACTGGAACTGTCACTATACGTGGAACGTCG 450162 29 100.0 32 ............................. ACAACCGTCGTTTTCTCCACGACGTCGAGAAG 450223 29 100.0 32 ............................. ATCTCCGGCACGTGCGATAACGGGTCTGATTA 450284 29 100.0 32 ............................. CGACCCAGCGTTACGCGGTAATATTTCGCACC 450345 29 100.0 32 ............................. GACGTTGATTTACACGGCAAAGATACGGAATC 450406 29 100.0 32 ............................. GTACTGGCCTATTCCACATACAGTGGCACGCG 450467 29 100.0 32 ............................. TAGCTTAATCACGGTGCGTCCCTCCTCCGTTC 450528 29 96.6 32 ...C......................... ACCTGATTGAGGTAATCATGAAAAAAATATTA 450589 29 100.0 32 ............................. GCTGGAGCGCAACTGCCAGTGACTACAGAAGC 450650 29 96.6 32 ............T................ AGCACGCCACAGCGCGTAACTGTCGCAATAGA 450711 29 100.0 32 ............................. CGTCTTATCAGGATACCTGCAAACAGATGTTG 450772 29 100.0 32 ............................. ACCCCCCATTTACTGTTATTGTAGGGATAGCC 450833 29 100.0 32 ............................. CGAGCGCGGAATGATTTTTAACGCTGAGATGG 450894 29 100.0 32 ............................. GCTGGAATGGTACGGCTTACCAACTTCCCTGA 450955 29 100.0 32 ............................. TGTTTGCCATTCTCTCGCGTGCTGAGGGAGAC 451016 29 100.0 32 ............................. ATTTGCGTCAGACTACCGACAGGGGCTGGTAT 451077 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 467662-470560 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECOG010000001.1 Salmonella enterica strain S63 S63_contig000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 467662 29 100.0 32 ............................. CGAACACTGGCTTAAGTGCCATTGCTGGAAGT 467723 29 100.0 32 ............................. CGTCATCATACCAACTGCTGGTCGATACGATT 467784 29 100.0 32 ............................. ATAACAGCGGCCACAATATAAACAATGGTTAA 467845 29 100.0 32 ............................. CATTCTGACTAACGCCACCACAATTGCCGCTA 467906 29 100.0 32 ............................. ATGTCAGCGCAGGAGATGGCGGCGACTGCTGG 467967 29 100.0 32 ............................. CGCCGCCCCCATCACAGCACCCCGGCCAGCTT 468028 29 100.0 32 ............................. GTCTTGAGCAGTGGGCGCAAGAGTCTGGTTAT 468089 29 100.0 32 ............................. GAATCGCGGGAATTAATATTAAATCTGGCGTC 468150 29 100.0 32 ............................. CGGGCATTTGCCCGCTTTTCATTACAGTGATT 468211 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 468272 29 100.0 32 ............................. GTCACGTGCGGTTATCCTGCAATTTCTGACGA 468333 29 100.0 32 ............................. GTTTACAGCCTGAGCAATGCCGGAATGAATGA 468394 29 100.0 32 ............................. TATTTCAATATTCATTCATTGCAGGCGTAGGA 468455 29 100.0 32 ............................. ACGCGAGCGCCGGTAGTCAGCACATCATTAAA 468516 29 100.0 32 ............................. CATAACCATAACCAAATTGGGTTAATGGCGCC 468577 29 100.0 32 ............................. CCAGCCTCTTCAACGAGTTCGAGAAACGCGGT 468638 29 100.0 32 ............................. TCTGGTCGTCCGAGGCTGAGGCCGAGTGGCTG 468699 29 100.0 32 ............................. CGCACCTGCCGGGACATGACCCTGCCGGAGCT 468760 29 100.0 32 ............................. GCGTTTAAACGCTTTTTTGATATCGGCTTCAG 468821 29 100.0 32 ............................. TTAGAGTTGAAATTGATGGCATTGAACTTGGC 468882 29 100.0 32 ............................. TACCAAAGATACCGCCGCGCTGCTTTCTGGTA 468943 29 100.0 32 ............................. GCATTGCCTGGCTGAGTCCGTCGCTAACTGCG 469004 29 100.0 32 ............................. TAGCTTCTTTGTTCGTGCGGGGCGGATTATGC 469065 29 100.0 32 ............................. CATAATTTACGCGGCCCTTTTTTGGTCACCCA 469126 29 100.0 32 ............................. CGAATAAACAGGCCTGTAACGCGCTCCAGCGT 469187 29 100.0 32 ............................. GCTCCGCCTTGAAAATAACATCTGACATTGTG 469248 29 100.0 32 ............................. TGCCGGGGTTCTGCAGTCTCTATTTTCCTCGC 469309 29 100.0 32 ............................. GAGCTGATAGAGGCCAACCCGGACGCAAAAAT 469370 29 100.0 32 ............................. TGCACATACATCCTCACTTACTGGGTCTGACA 469431 29 100.0 32 ............................. AGCTGTTCGGCGTGGCGGCGTAGCGCCTCGGG 469492 29 100.0 32 ............................. CTGCTGATGTAATGGCCGACGCAGATGCTGTG 469553 29 100.0 32 ............................. AAAGTTGACACAATAGCGAAATCAATTACTGA 469614 29 100.0 33 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCCC 469676 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 469737 29 100.0 32 ............................. TGATCCAGCCACTTAAACAAAATGATCCACAT 469798 29 100.0 32 ............................. GGCCACACCGACAACCGCAACGGATACAAACA 469859 29 100.0 32 ............................. CAGCCGGAACGACAGCAGCGACAGCGACGTGG 469920 29 100.0 32 ............................. ATATTATAAAAAAAATAATAACCTCTCAGAAA 469981 29 100.0 32 ............................. GTTTGGTTCATCCTGAACGGCGTTCGTGGGGA 470042 29 100.0 32 ............................. CGCCCGCATGATGGCGCGGTTACTTAATGTCA 470103 29 100.0 33 ............................. CGGTATGCTATTGACAGGAGTGAGATTTTAGAT 470165 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 470226 29 96.6 32 ............T................ TTGATTACAGTAAAATTTACGTTTATTCAGTC 470287 29 100.0 32 ............................. AAATCTCCACCGTGGATATTTCGGTTATTGGT 470348 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 470409 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 470470 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 470531 29 100.0 0 ............................. | A [470558] ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //