Array 1 8583255-8579181 **** Predicted by CRISPRDetect 2.4 *** >NC_008095.1 Myxococcus xanthus DK 1622, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 8583254 37 97.3 33 .................A................... GGGCCCGAACACGCGGCGAGAGCCAGCGCCATC 8583184 37 97.3 33 .................A................... GCTGGCACACGGGCGAGCCGGAACAGCTCCAGC 8583114 37 97.3 34 .................A................... CGGATGGTCCACAGGACCACCTGGCGATCATCGT 8583043 37 97.3 34 .................A................... CGAAGGGTTGAAGGCCACGAGTGCGAGTGGCAGG 8582972 37 97.3 37 .................A................... CACGCAGGCCCAAGCGCAGCTCCATGCGCAGATCGCG 8582898 37 97.3 36 .................A................... CGGGCAGGTGCTGTGGACCGCGTTGGTGGCTGTCGA 8582825 37 97.3 32 .................A................... CAAGCTGTGACAGCGGTGTGACAGCGGATTCT 8582756 37 97.3 35 .................A................... AACAACTACCTCGGGAACATGGATGGCACGGTCAA 8582684 37 97.3 33 .................A................... GAGGAGGGGCTGCGCAGGGCCCTGAAGTCTGAC 8582614 37 97.3 34 .................A................... GCGTCCGGGCCCGCCTGGAGAACCACGGGGCATT 8582543 37 100.0 32 ..................................... ATCCCCTCCTGTCCCATCCTCCCCACCACCAG 8582474 37 100.0 33 ..................................... AGCGAGCTGGGACTCCAACTCCCGAACGCGGGA 8582404 37 100.0 34 ..................................... CAGCGCGGCCGTCTGCGCTGGTGCTCCGGAGGGC 8582333 37 100.0 34 ..................................... CGTGCATATTCACCGGCACCCCATCTGTCCCCTT 8582262 37 100.0 34 ..................................... CGTGCATATTCACCGGCACCCCATCTGTCCCCTT 8582191 37 100.0 33 ..................................... TGCACCGCCTCCTGCGAGGCTGCCGCGCAGCAG 8582121 37 100.0 35 ..................................... TCCTCGCGAGTCGTAGCACCTGGGCGGCTCGCGCG 8582049 37 100.0 36 ..................................... AGCACCCAGCGGATGCCCTGGGCGAGCTCCTCTTCG 8581976 37 100.0 33 ..................................... ATAGACGTCGTAGGACTGGGCGAGCGCGGGGGC 8581906 37 100.0 34 ..................................... TTCGAGCCGTCGGTTGTGGGGGACCTGTTCGGGC 8581835 37 100.0 33 ..................................... TTGATCGAGCAGCTCAACGGGAAGAGCACGATC 8581765 37 100.0 33 ..................................... CGCCCCAGCTTGCAGGCCGAGGAGCCGCAGTGC 8581695 37 100.0 33 ..................................... GGAGAGCAGATGCGCGGCTGGTCCCTCATGGTG 8581625 37 100.0 32 ..................................... GCAATCTGACGGTGAAGCCTGGCGCCGAGCTC 8581556 37 100.0 35 ..................................... CCATCCGAACCGACACCTACCACCTGACGTGCAAA 8581484 37 100.0 33 ..................................... CTGATCGAGCAGCTCAACGGGAAGAGCACGATC 8581414 37 100.0 33 ..................................... CGTCCCACGGCAAGCCCGTCCCAGTGGCGCGTA 8581344 37 100.0 33 ..................................... TCCCCAGCAGAGGCTCTTGAGGCCGCCTACGTG 8581274 37 100.0 35 ..................................... TCCACGTCGCTGGGCTTGGGCCAGCCCGGGAGCTG 8581202 37 97.3 33 ............................A........ GACGCAATCCGCGTCGATTCGTCCAAGAGGAGG 8581132 37 100.0 35 ..................................... TGCACCACGGGGATGCCGAGCGCCGCCACCCGAGC 8581060 37 100.0 35 ..................................... GGGACGGTCCACTTCTTCGAGCCCCAAGTCTACGG 8580988 37 100.0 33 ..................................... ATCGCCGTAGATGGTCGCCAGGGGCCCGGCGCA 8580918 37 100.0 33 ..................................... TTGATGCCGACCCAGCAGACCGCGCAGCGCTCA 8580848 37 100.0 33 ..................................... GAGTGGCCCGGGAGGGACGGCGTGGCTGACTGG 8580778 37 100.0 33 ..................................... TCCAGCCCGCGCAGACGGCGGGCAACGTCCGCA 8580708 37 100.0 34 ..................................... ATGAGTCGCTGGCGCACCACATCCATGTCGCGCG 8580637 37 100.0 34 ..................................... CCAGGGGTCGGAGCACACCCACGACAATCCAGCC 8580566 37 100.0 34 ..................................... ATGGAGCGCGGACAGGTTCAGCTTGAAGCCCTTG 8580495 37 100.0 39 ..................................... TGAACCCGCCCACGGGCGTCTGCTGCTCGCCACACGCGC 8580419 37 100.0 34 ..................................... CCGATTCCTGTCGCACTCCGATGGCCGATTCCGT 8580348 37 100.0 33 ..................................... GTAAAGCGAGGACAACAGCGCCACCTGGATGCG 8580278 37 97.3 33 ..............................G...... CGCGAAGATCGCCTGCTAGACGAAGGTTGCCGG 8580208 37 100.0 35 ..................................... TGTCCGTCGACGTCGAGCGCTTCGAACGTCACGTT 8580136 37 100.0 34 ..................................... AGCATTCACCCGGCTGCTGTCACGGTCGTGTGGA 8580065 37 97.3 33 .....................A............... TGGTCGCTGATGCTTGCGCCGAGCGCGGAGAAC 8579995 37 97.3 34 ..............................C...... ACGTCCAGGTTGCTACGGTCGGTGATGGCGGCCT 8579924 37 97.3 33 T.................................... TTGTAGACGAGGTATGCGGCGGCGGCGAGCGCA 8579854 37 97.3 34 .......................A............. GTCGCAGATCACCAAGTCTGCTTCGGGCGGCTTC 8579783 37 97.3 32 ...........................A......... TCATTCGCCTCGCCGGCCTTCTGGGCCTTGTC 8579714 37 97.3 35 ........C............................ ATGATGCTCGTGGACAAGGACCCGGCCGCCAGCGG 8579642 37 100.0 34 ..................................... GTCAGTGCGCACCGCAACGGCCTGGCGCCACAGC 8579571 37 97.3 36 ......T.............................. CGTGCAGTCTCAAACCAGTCTTTGCCCGACCGGATA 8579498 37 94.6 34 ...A...............A................. CTGAACGCCGCCGCCGGCGTGCTGTTTTCGAGGT 8579427 37 94.6 31 .......................AT............ TCACCCAGCAACGTGGGGGAGTACCGGAGGG 8579359 37 97.3 35 ..........A.......................... ACCGCTGACTCCGTGGACCTCGCGTACCTGGGCCA 8579287 37 100.0 33 ..................................... CGCGAGGCGCACCGGGTGGTGGACGGGTGGGCG 8579217 37 94.6 0 ......T............A................. | ========== ====== ====== ====== ===================================== ======================================= ================== 58 37 98.8 34 GTCGCTCCTCGTGAACGCGGGGAGCGTGGGTTGAAAC # Left flank : TCCCTTCGCGATGCGCTGATGCGTAGATTGACCGTGCTGATTTGTTACGACGTGCGGGTGTCGGACCCACAGGGGCCTCGGCGCCTGCGCAAGATTGCGCGGGCTTGCAGAGACCATGGCGTGCGAGTGCAATACTCCGTCTTCGAGTGTGTCCTGGAGCCCAAGGACTGGGTCGTCCTGCGCGCCCGCCTGCTCGGCGCATTCGATTCGGAATGCGACAGCCTGCGCTTCTACTTCCTGTCGGAGGACGATGCCCGGAAGACGGAGCATCATGGCGCCAGAGCACCCTTGGACGTCGAGGGGCCGCTGGTCCTGTAGGCCTCCGCGAACCCGTCCCGGTGTACGCTCCGCCGAGGGTTCGCGCTCATTGAAATCCCGAATAGAATCATGGAGTTGGGTGAGTGGGCGTCAGGAACGGCGAGGCGCTTTCGTGGCCCCGCGGGCCGGTTCGCGAAGTTCGGCCGGATTCCGTAGTCAGAACGGTATGTTGGAAGGGCAGA # Right flank : CACCCAGAGCACTGGAGTCCCGGTGCCGCGTCCTGCTCGTTCCTCATGAACGCGAGTACTCTCTCTCTTCAACGGGTCCGAAAATTGGGGAGCAGATCACGAGGACTCGCTCATGCTCAGGCTCCAGAAGTCGCCGGGCATACCCAATCCACGGCACTTCTGGCTCGAGGTTTTCGGGGATGGCCGTTCCAAGCGCAACGGCTCGTCTCTATCCAAAGCGAACGCGGCCGACGCCCATCGGCTCACGATGCTGCTCATCGCCGCGCGCCGGTTGGACGAATACAAGGAAGATCACAGCGCCCTCCTCCCGTCGCACATGACCGGCAGGTGACGATGTTCGAATCCACCGTGGACGGTCGGCGCACGCGTCTGACGTTGGACAGCGACACGCCGCCCGACATCCTCCGCTTCATGCCGCAGGTGGCTGCCGCTTACGGCATCGAGCTTTGAGCACGAGGACCCCGGGCGCCCCAGGGTTGGAGGAACACCTCCGTCTCCTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGAACGCGGGGAGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 8859539-8858923 **** Predicted by CRISPRDetect 2.4 *** >NC_008095.1 Myxococcus xanthus DK 1622, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 8859538 36 100.0 36 .................................... AACGCGACCTGCGGCGTCTCTTTGTATCCGTGCACC 8859466 36 100.0 37 .................................... TCCCTGCGCGATAGGGCCGCGCGCGTGGTACCCTTCG 8859393 36 100.0 40 .................................... AAAGGTGGGGCGTCCTCTCGCACCAGGTGCCCCGCGTGGG 8859317 36 100.0 35 .................................... TCGACGGGGACGAAATGGGCTCACGCCTCTGGACG 8859246 36 100.0 36 .................................... TGGAAGAAGACGGCCATCCGCCGGCTGATCAAGCTG 8859174 36 100.0 38 .................................... ACATGGATGCCGCGCAGTGCCTGCATCGGCCCGAGCCC 8859100 36 100.0 33 .................................... CCAGCGCATATCCCTCGTACCGCCCGAGGTTCG 8859031 36 100.0 35 .................................... CTGAGCTGCGGGTGAAGGGGGCGTTGCAGGCCAAG 8858960 36 94.4 0 .....A............................C. | TC [8858927] ========== ====== ====== ====== ==================================== ======================================== ================== 9 36 99.4 36 GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Left flank : GCTGACTGTCCTGTTGTCCAGGCGGACCCAGAAGAGCCGTTCAAGAACGAGGACCATATCGTTCCCCTGTATGGTCCCTTGAAGGACATGCTCTTCCTGATGGCCTTCAGCAGGAAGCGGATGGCCCTTCTGGAGCATCGGCGACGGTTCCTCCCTTCACTCGTGCGCAGCGGAACGGGGAATGTCCGAATCGTGGCTCCCTCCTTGGTGGGAGCCATCGACGAGACGCTTCTCCAGCTCGGCTTCCAGACGCTGCCCTATACCAGCCCACTGACTCCGCTCTACGAGCGCGGTGACGCAGCCTTCTACGTCGACCGTTCTTCACAGGGAGGAGGACTGTCCGCCGAGTTGGCGGCACGAGATGAGCGAGAATTCGGGAGGCTGGTCGAAGTCATCCAGGATTCTACGACTCTTGTATAGTATTATCCGGTCAGGTGCACCAAGCGCGGTCGCCCCGTGCTGACGGATACGGGCGCCATTGCCATCCCAGAGGACGGCAA # Right flank : TATCAGAAGATCTTCATTGTAGCCTGGGCCAGCCATGAACGCAGCGCCTCGCCTTCAACCCGGACGGGCGCGTTCTCGTGACCCAGATCAATCCAGGAGGCCTGGGTCGCCTGTAATCCGGAGGCGCCGCGGAGATCTGCCCCAGAAAGCCTCGCTCCATGAAGGACCGCGCCTTCCAGATGCGCATCTCGGAGATTCGCGGACGCGAGGTTGGCACTGACCAGGTAGGCGCCTTGAAGGTCCGCGCCTTGAAGGTCCGCGCCTTGAAGGTCTGCTTCGCCGAAGCTGGCTCGGAGCGCGTTCACCTGCGTCAGAATGGCCCCTCGAAGGAGCGCATAGTCCAGGTTGGCCTTTGAAAGCTGCGCTCTGGAGAGGCTGGCGCCGATGAAAGATGCGGACGCAAGGTTGGCGTGGGCGAGCTTCGTCCTGTCCAGGATGCATCCATCCAAGCGCGCCCCAGGAAGCGCTGCCTCCGATAGATCTCTCGACGACAGGTCGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 8862429-8860814 **** Predicted by CRISPRDetect 2.4 *** >NC_008095.1 Myxococcus xanthus DK 1622, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 8862428 36 97.2 37 ...T................................ TGCTGACGCACCACGGCAAGCGGATGGGGCGCTGTCA 8862355 36 100.0 39 .................................... GTTTCCGACGCGCACGCGCTTGCGGTGTCCGTCCGGGTC 8862280 36 100.0 35 .................................... AAGGCGTTGCGCGCCACCATCTGGCAGTGCATGCC 8862209 36 100.0 35 .................................... CCGTGGCGGCACACCTGTACGGTGCCAAGTCATGA 8862138 36 100.0 35 .................................... AATCCTCACTGTACGAACAGCCCGCGCTGCGTCCT 8862067 36 100.0 36 .................................... GCCTGATGCAGCGTGGATACACGCTGAAGCCGCCTG 8861995 36 100.0 33 .................................... GAGAAGGGTGTCAAGGCTAGCATTGAAGGCTTT 8861926 36 100.0 36 .................................... GAGGTCGCTGCCGCCCTGCGCGCCGTGGGCTTCCAG 8861854 36 100.0 37 .................................... GCGTCTATCGCCAGGACAAGGGCTGTGTGTCCTTGGA 8861781 36 100.0 37 .................................... CCTCGGATGTTGCGTTGGATCGCGTCGTAGGTGTGTT 8861708 36 100.0 33 .................................... GGCGCGGAGCCGACCGCCATCGCGCGTTCCTTC 8861639 36 100.0 35 .................................... CGCCAGGGGGGGTCCTGAACGCGATTCACCGCGTC 8861568 36 100.0 37 .................................... AACGACCTCTGGTCGAAGTTGGTGCGTGGCAACGAAT 8861495 36 100.0 37 .................................... CCTCGGATGTTGCGTTGGATCGCGTCGTAGGTGTGCT 8861422 36 100.0 36 .................................... CAGGGCTGGGACCTGTATCTGGAGAAGACGCGCGTT 8861350 36 97.2 37 ...........A........................ TACCCACCCATGCCGACCGTTATCAGCTCCCACATCT 8861277 36 100.0 38 .................................... CTCGATGCGATGGGTTCGAATCCGGGCGGTCCTGTGAC 8861203 36 100.0 33 .................................... TCCCGGGCCTGAGCTACACATCCGCGCTGGCAT 8861134 36 100.0 34 .................................... GTCAGCATCGCGTCCGGAAACTTGCCGAGCGCCT 8861064 36 100.0 35 .................................... CTTTACCTGCCGCGCCGACAACGACCTGCGGCGGC 8860993 36 100.0 35 .................................... CCTTGGTACGTGGAGTGCGGCATTGCAGCTCTCAT 8860922 36 100.0 37 .................................... CTGCCGCGTCCGCCCATGTTCTTGCTCTCCATGTTTC 8860849 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ======================================= ================== 23 36 99.5 36 GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Left flank : CGCGACCCCAAGCGGTGGCGGAAGGTGCATGCCCTGCTGAAGGGATACGGAGAGTGGCTGCAGCTCTCCGTGTTCCGCTGCTCGCTGACGGACCGGGACCGGGAGAAGCTGCGCTGGGAGCTGTCGCGGCGGATGGACGCCGTGGATACGTTGCTGGTGATTGGGCTGTGTGGCGGGTGCGTGGAGCGCGTGCGCGCCATCAACGCGAAGGAGGACTGGCCGGAGGAGCCCGCACCGTTCAAGGTGCTGTGAGACGGACGACAATCAAGCACCTCGCCGTGGCGGAGGCTCGCGATGGCGAAAGTGGCGGATTCCCTGTCGTTTCATGGGGGTGAGGCTCTTTGACAGGTGAATAGGTGCATGATCGATGAAAAGCCGAGTGGTTTCATGGGGTTGGCGATTCTGGGTAGGGCCTGGGATGGCCAACCTGGGGGAAGGAGGGGGAGGTGCTTGAAAGGGGTTTGTAAGGTGCCGGAATTGCTGGGGGATTCAGGCGGGCT # Right flank : CGCTGGTTGTTACGCCAGTCGTTGTTGGTGTGGCCGCACACACTATTTGAGTTGTGAATGACTGTTCTCGCGGACACTGATTGAGGGGCTCGCGAGGAGAGGTTCCGAAAATGCCATTACGGAGCCGCGCCACCGGAAATCACGCTCGTGATGGGAGTCAACTCATTGTCGCGACAGCAGTTTCCGCGAGAAGCGGAAATGATTGCTCCCATCCTGCGGTTCTCCGGTCGCGTCAGGGCTGCCCGAAGGGCACCGCCGGAGGCGGCCAAGCCCTTGACGCGACTGGGGAACCGTAGTCCCGAGGCTACCAACCAAGTGGCTCACCGGACCATCAACAAAGGTGCGCGGCAACACCTCGGGCGACAGCTGCAAGGTGGTATTGACGGAGATGCTCTGCGACATCAACAAGAAGTCATGCTGAACTCTCTCTTGCTCCCGTTTGATGCCCTACGCCATGAAAGAACTGCTCAAGTACATCAATGGATTCGAACCCGCATTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 4 8888067-8884281 **** Predicted by CRISPRDetect 2.4 *** >NC_008095.1 Myxococcus xanthus DK 1622, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 8888066 36 100.0 34 .................................... GTCCGGCGCTTCAAAATCTCTTTCGACTCATGCA 8887996 36 100.0 37 .................................... CCGTGGTGGGTGATGGCCCACGTCCACGGGCGCGCGA 8887923 36 100.0 35 .................................... AGGTACTTCTCCAGGCTGCCGCGCATGCCCGTCAG 8887852 36 100.0 35 .................................... GGCCTGATGCGCTCAGGCGGGTGGCTAGATGGATG 8887781 36 100.0 35 .................................... ACGTGGCACGCGGACAACCTGCGCGTGCATGCCAA 8887710 36 100.0 35 .................................... GCCGCGCTCCAGCATCGTGACGACGAGCACGTGGT 8887639 36 100.0 36 .................................... TCCGTCTTCACCGTCATGTCGTCGTCCTCCCTCAAG 8887567 36 100.0 36 .................................... CCCAGGCAGGCCCGATATTCGGCTTCAGCGCTCCAG 8887495 36 100.0 39 .................................... TCCATTGGCTGAGGCGAATGCCTCATTCCATGGTCTGTT 8887420 36 100.0 37 .................................... AATTGGGCCTCGCGGTGAACACCGAAAATCTGGTCCG 8887347 36 100.0 35 .................................... TCGAACCTTCCGATGCTTGAAGGTCACCGCATGGG 8887276 36 100.0 38 .................................... AAACTATACTCAGTCCTGATTTGCATTTGCGTCCTCCG 8887202 36 100.0 38 .................................... CTAACAACGCTTTTGCTGACCCTGTGCAATTGGTTAAC 8887128 36 100.0 36 .................................... TCCAGCTCCAGGTGGGCGCCAGCCAGCGCGAGGCGG 8887056 36 100.0 36 .................................... ATGTCCTCGGCAATCAGGACGAAGGCGGCGCGTTCG 8886984 36 100.0 37 .................................... GTGCGTCTGGCCTTCGCCGTCGTGACGAAAAGGATGG 8886911 36 100.0 35 .................................... GTGCTACCTCCTACTGCATGAGAGACAAGGCGGGA 8886840 36 100.0 37 .................................... CCATGAGAAGGCCATTGTCCCCTTCACGGGTTCATAG 8886767 36 100.0 38 .................................... TCGGCGAGGTCGCTCCGGGCGTAGTCCAGGGCCTTGGC 8886693 36 100.0 38 .................................... TCGGCGAGGTCGCTCCGGGCGTAGTCCAGGGCCTTGGC 8886619 36 100.0 34 .................................... TCTGGCACCGGGGCCGTGGAGCGCGCTGGGTTCA 8886549 36 100.0 40 .................................... TCGAGGCCGGCCAACCCGGCCGTTGGGTGAGTTCGAGAGA 8886473 36 100.0 38 .................................... ACGGCGATGTGCAATGCGAAGCGTATCTCGGTCCCCTG 8886399 36 100.0 37 .................................... CACGACATCCAACCCGGCCCGCGCCATGTCCGGGGCG 8886326 36 97.2 36 .........A.......................... CTCCCATCGCGCCCCGTGAACGTCTTCTCCCGTCCA 8886254 36 100.0 33 .................................... CTCGTATCGAGTCCAGGAAGCTCCTCGACTTCA 8886185 36 100.0 38 .................................... CGTCGCCATGTCGTGTGTCCTCTGCGGTGCTGCGGGTG 8886111 36 100.0 40 .................................... GTCAGGGCGGCGCTCAGGTACTCTGCGCGGTACTGAGCGG 8886035 36 100.0 33 .................................... TCTGCCATTCGCACGATGCCGTCCGGCTTGAAT 8885966 36 100.0 34 .................................... TCCGAGGTGGGCGGCAAGGTCGAGTGCGAGCGCA 8885896 36 100.0 36 .................................... CCCAGGCAGGCCCGATATTCGGCTTCAGCGCTCCAG 8885824 36 100.0 40 .................................... CACATCGCGGCGACCTGCCGTGACGAGAAGGCCATCTGGT 8885748 36 100.0 34 .................................... AGGACAACCGCATCACGAAGGGGGAAGCGACGAT 8885678 36 100.0 34 .................................... CTCGCCTACGAGCACGACATCTTCAAATCAGGAG 8885608 36 100.0 37 .................................... AAACCCCCGTCGCGCCCCATGTAGCCGACTGGGTGGT 8885535 36 100.0 36 .................................... AAGAAGTCCGGCCGGATTGAGCGGATGCGGCCTATG 8885463 36 100.0 35 .................................... CCTTCCGTGCGATGCGCCAGAAATTGACTGGCAAG 8885392 36 97.2 36 ......G............................. ATGACAGTGATGATGCGTGGGTCCGGGACGGTCAAC 8885320 36 100.0 37 .................................... GGAGGGTGCTCCGCGATCTCCGGTGCCGAGTTGCCCG 8885247 36 100.0 37 .................................... TAGTCATTCACGAAGATGGAGATGCCGCGGTACGCAG 8885174 36 100.0 36 .................................... TCACCATGGCGGCCGTGCGGCGAAAGCCGCGCAGGA 8885102 36 100.0 36 .................................... TCGTAGCCGGAGTACCACCCGCCATTGCCGTTCTCC 8885030 36 100.0 33 .................................... GTTTGAAGATTGCCTGTTAGGCCGTAAGGCTTC 8884961 36 100.0 35 .................................... CTGCAAGCACGGTGGCCAGCAGCTTGCCGCCGTTG 8884890 36 100.0 38 .................................... AAACACACGGGGTGTTTCAACATATCGCCGTCGATTTC 8884816 36 100.0 36 .................................... CCGAACCCATGGAACGGGTCATATTTATTGAACATA 8884744 36 100.0 34 .................................... CTATTACGCGCGCTGCGAATGCAGTCATCCAAGA 8884674 36 100.0 34 .................................... CTCGCACTCGACGCGAGACGGCGCCAACCCACCA 8884604 36 100.0 34 .................................... GCTTCTCCGTCCTTCTTCTTGTCGTCTGCCATTT 8884534 36 97.2 39 ...................................T GTGGTCCAGTGGTCGCCCTTCACGCGGACGACGTCGGGC 8884459 36 97.2 37 .....................C.............. AAGGCTGGTATCCGTGACGCGGAGCGCTTGGTACGCG 8884386 36 94.4 32 ..C............................C.... TAGTCGGTTCCGCCATTCTGGTGTTGCCAGAC 8884318 36 94.4 0 ...............................CT... | CG [8884314] ========== ====== ====== ====== ==================================== ======================================== ================== 53 36 99.6 36 GTGCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Left flank : GCTGGTGCGTATCGCCGGGAAGCGGGTGGTGGGTTACGCGCTCGAGCTGCATGGCGTTTCTGGAGAGGACTCGTTGCGAGTGCAGGCACAAGGCCTGGGCGGGCGCCGCCACATGGGGTGTGGCTTGTTTCTTCCGCCGCGTCCCGTGGTGCGGGGCGTTGTGCCGCAGCTCGGGGAACTCGCGCGGGCCGCGTGAAGGCTTGCCGGTGGAGCAGGGGCCTTGCAGGAACGTAGGACCGGGGGCTGTGCGGTGCGTGACATTCATGCACCTCGCCGTGGTGGAGGCCTGTGCCGGTGAAATCGTTGAAATCCTCAGCGAGTTCATGGGGTTGGGGCTCTTTGACAGGTGAATAGGTGCATGATTTATGAAAAACCGAGTGATTCCATGGGGTTTGGAATCTTGGGTAGGGCCTGGGAGGCGCAACCTGGGGCCGGGAGGGGGGAGGTGCTTGAAAAGACGGGAGTAAGTTGCCGGAACTGCTGGGAGATTCAGATGGGCT # Right flank : ATCTGGAAGCTGCGAGGCCATCCTGCTTTCCAGCAAGGTCGCGCTCGCCGTACAGGGCCTCCATGAGCGAACATCAGGTCTACGAGTTCGTGGCGCTGGACCGGCCCTTGACGGCAAAGCAGCTGGTCGAACTCCGGGCCATATCGACGCGGGCCGAAATCACACCGACCCGGTTCTGGAACGAATACCACCGGGGTGGCTTGATGGCGGACCCAGCCCAGCTCCTCCTGCGCTACTTCGATGCGCACCTGTACCATTCGAACTGGGGCGACCGTTGGCTGATGCTGCGCCTGCCGCGTGAGGGGCTCGACATGAAGGCGCTCAAGGCCTGCTTTCCGGCACGAGGTCCATCAACGCTCACGGTGTCTGGGACCTCCGTGTTGCTCGACTTCCAGGTGAGGGATGAGGAGCCCCCGGACGAGGAATCTCCGCCCGCCTCGCTCGCGGCGCTGGTTCCGCTCCGGACCGAACTCCAGCGCGGAGACCTGCGCGGGGCCTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //