Array 1 26724-27761 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHFD010000032.1 Haloferula luteola strain YC6886 Ga0415357_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 26724 33 100.0 33 ................................. TTCCCGCCGATCCATCCGGCAACCTTCTGCCGC 26790 33 100.0 34 ................................. CTGTTCCGATTGACACGCGGGACATTCAATTTCC 26857 33 100.0 34 ................................. GCCAAGGTGGCGTGGACGATCGCTACGGCGGTGA 26924 33 100.0 34 ................................. CGCTCCCTCCGACTCCCCATACCCTTGCAGTCCA 26991 33 100.0 34 ................................. GCAGTGTACGCTGCCCGGTCCGCATCCTCGACCA 27058 33 100.0 34 ................................. GCCTCCAAAGCCGGCGTAATCACCACCCCCAGAA 27125 33 100.0 35 ................................. GGTCCAGGTCGAAGTCTTTAATCCGAAGCTCACAT 27193 33 100.0 34 ................................. TGAGTCGTGGGTAGGCAACTGTCCGAAATGCCAC 27260 33 100.0 34 ................................. GATGCAGAGGATTGAGGCAGCACCGCAAACCCCG 27327 33 100.0 33 ................................. AAGTCGGGGGTTGGCTCCTTGGGCAGTCACTCC 27393 33 100.0 34 ................................. AGCAACCGCGCATTTGCGCAAGCCGTGGCGGACC 27460 33 100.0 34 ................................. CCTGGGTAGAAGAAGAGGTTCGCAGCCGCAGTCG 27527 33 100.0 34 ................................. AGGCCCGTAACAGCTCCGTCAGCGATTTGCACCG 27594 33 100.0 34 ................................. GGTTCTGCCTCGAAGTCATGGTACCGATACTGAC 27661 33 100.0 35 ................................. GGCGAGATGGAGCCCACCAAGCTGCTCGAACAATA 27729 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 16 33 100.0 34 GTCGCCCCTCACACGAGGGGCGCGGATTGAAAC # Left flank : TAGTTTCCCGAACTACGGACTGCCATGTATGTTCTCGTCACCTACGATGTTTCCACCACCACTCCGAAGGGTCGAGCGAGGCTACGGCGGGTGGCCAAGGCCTGTGAGGACTTCGGCCAGCGGGTGCAGAACTCCGTGTTCGAATGCAAGGTCGATCCCGCCCAATTGGTGTCCCTCAAGGCCCGTCTGCTAAATCTGATCGACGAAGAAGTCGATTCGGTCCGTTTTTACCATTTGGGCTCGAACTGGCACCAAAAGGTCGAGCATCATGGTGCCCGGCCGGGTTACGATGTGGATGGCCCGTTGATTCTCTAACTGCTTTGCGCGAACCCTGACCGCCCGCCAAATCCCCGGGAGGTTCGCGTTTCTCGCAAACTGTTGGCTTTCTGATCTTTGACAGACATTTAGAGATTATCTTTTGCCTGATGAATCGAAGCATCATTAGGTTCGCGGAAACCCGCGCTCTTGCCACTCAGGTTCAAAGGGTTCAGGCTTCCGCG # Right flank : CAGCTCGAGGAACTGGTGATCGTCGAAGCCGGCCAGTCCCCGTCGGGGATCACGTAGAAAATTACCTCGTTTGAAAACTACGTCACCTTCCTCTCCATGACACTATTCAAATGACTGTTTTTCTTGTAATAGAACCCATTACTCTTAAGCAAAGACGCTGCAGAAGGCAATCCGTCCGAAAACGCCTCCTCAATCACTTGACGAAAGTCCTTTGCCCGCACCCCCGGCAAGTGGCGAAGCGGGTTGACGATCTCCCCGTCAGGATCGACGAGGACGATCCGCCCTCCTCCGTCGGCGACGGTGTATCCATGCCGCATCAATCGATCAACAAACTCAGGACCGTCAGCACTCGCTGCCCACGCCTCGCCAATCTCCGGTCGTCGATCGGACTTTCTTCGATTGGAACTCAGCATCCGCCGATTCTCTTCCCGCCTTGGGCAACGAATGGTTCCCTGCCGCCTCTCATACTTCGACGCGAACCTCGACAACTTCCGTTTGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTCACACGAGGGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCACACGAGGTGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.74,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 218485-217541 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHFD010000004.1 Haloferula luteola strain YC6886 Ga0415357_04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 218484 29 100.0 32 ............................. AATGCGTCAGAATCGAATGCGAAACCTACCCG 218423 29 100.0 32 ............................. TCACCTTCGACGGATGATGCCCAAGCCCAACC 218362 29 100.0 32 ............................. CACCCGCCAGAGCGATTTCGCGGATCGTGGAG 218301 29 100.0 32 ............................. GTGGGAGAGTTGGAGGATTACAAACCGGAGCT 218240 29 100.0 32 ............................. TTCCGATACTCGATTGATGGAGGGATTTCTTG 218179 29 100.0 32 ............................. ATGAGGATCCGCAGATCCACCCCACGGACTAC 218118 29 96.6 32 ............................A CACCCACCACACCCACAACACACACAACACCA 218057 29 100.0 32 ............................. TGGTGAGACTCTGCACCGATGGCACCCGTAAC 217996 29 100.0 32 ............................. CGACCGGCGATCTGGGCATGGAGAATGCGGCG 217935 29 100.0 32 ............................. CCGCCAAAGATGCTCCGAAACGCCCACAGAGC 217874 29 96.6 32 ............................A GAGCTGCGCGAGGAAGAAATCAGCTTCCGGGT 217813 29 100.0 32 ............................. TGGCAGAGGTGACGGACCGCATCGTCAGGGAG 217752 29 100.0 32 ............................. AGGGGTCAATCATCTGGAGAGGAAACACCATG 217691 29 100.0 32 ............................. CCGCCAGACCGATTCCCCCAACCCTCCCGGGG 217630 29 100.0 32 ............................. CACCACCAACCACCATGAAACGCACCCTCGCA 217569 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GCTCTCCCCACACCCGTGGGGATGACCCG # Left flank : ATCTACCGGGCCAAGCTCCGGACGAGTGCGAATTGAATCCTCTGCAACCTCGATCCGACGCATGAGCAACCTCGCTAGTCTGACCCTGTTGTCGCACCAGCTTTGCTCGCCACCGCCATGACGGTCCTCGTCGCCCACAACACCCCACCTGCCATCCGGGGGCACTTAAAACGCTGGTTCATCGAGCCCAGACCCAACGTTTTCATCGGCACCCTCAATGTCCGCACCATCCGTAAGGTGCTGGATTTCGTCTTGCGAAATTCACCTCCTGACTTTGGCCTTCTTGTCATCTCCTCTGCCCCCAATTGCCAAGGCTACGTCATCGAACACATCGGCCCAGAGGGACAAAGCGGACGCCGAGAAGTAGATTTCTCAGGCATTCCCTTGATTGCGGAACAATGGATCGAGCCAGAGAATTGTCCTTTTTGAGACAATCTGTCACACCTTTCTTCGTCAAAATGCCTTCCCATAAATCTTCATAAGTCACTCATAGGTGAAGA # Right flank : ATTGGTCAACGTGCCCGAGGGAGCACCGTCGGGCTCTCCTCACTCCCCTTTTCCGAACACCTCGCCGAGTCGGGAGCGTCGCGGAGATGGGGCCTGTTCCTGGGGGACCCGGCTGTCCGCTTCGCACCTTCCAGCTGCCTTCGGTGCCGCGGTAACTGGTGACTCCTTACCCCCCTCGATAAGCGATCCTCGAGGGATTCACACATCGCGTGATTGGCGGCAGCCGCGGCTTAAGAAGCAGCTCAAAGGAGGTATTCCATCTCCGTAAAGGTCTCATCATCAATCTCAAACCTTTCTCCCAAAGGCTGAAGATTTCGCTTCCCTAGAACTACGTAGTTCTGCTCAATTTGCAGCCGAGCTTGCAAATCCGGGCTCTCCTCCCTGATGCCCCTTCGTCGTTCCCATCCCAGCAAATTGGCGGTCTCTCGTCGACTCATGGGTGAACACGAAATAGGGAAAGCTTTACTGAACCCTCTCGGCATGTCGGCCGACCCCTGGAC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCTCCCCACACCCGTGGGGATGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //