Array 1 83590-82066 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041932.1 Thermococcus sp. SY113 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================= ================== 83589 30 100.0 37 .............................. ACGTTGCTCATTGGTTCAGCAGTTTACATTGGACTTA 83522 30 100.0 36 .............................. CCCTTCTCCTGTAGCAATGTCCAGTCGAACTCAAAC 83456 30 100.0 36 .............................. CCCTTCTCCTGTAGCAATGTCCAGTCGAACTCAAAC 83390 30 100.0 38 .............................. GTAATAAAGATACACAGTACGCAAGCGAAGGATCTAGA 83322 30 100.0 37 .............................. TCAAGCGGCCGGGTTGGTAACCTGGGCGATACCTATG 83255 30 100.0 38 .............................. TCGCCGCCCTCCCCTAAAGCCTGCTTGCGGCGCTTCAT 83187 30 100.0 36 .............................. AGGTCCTAGAGGTCATGAAGAGTCTAATCGATAAGG 83121 30 100.0 38 .............................. TATATAATTCTTACTCCGACGGCAGGAAATGCCATATC 83053 30 100.0 37 .............................. CACTACATGAGGAGCTGATGAAGAGGAGAAAGCAGGC 82986 30 100.0 37 .............................. ATGAGGACTGGCCCGAGCCCAATGGCCCACAGCTTTG 82919 30 100.0 37 .............................. CGCTATCGGGGGCATAGAAGAGCACGAGGCCGTCCGT 82852 30 100.0 37 .............................. TCATTCCGACCACCTCCGTGTTTTTGAGGGCGGATCT 82785 30 100.0 37 .............................. TCATTCCGACCACCTCCGTGTTTTTGAGGGCGGATCT 82718 30 100.0 55 .............................. TCATTCCGACCACCTCCGTGTTTTTGAGGGCGGATCTCTATGTCCCCGCCCTCAA 82633 30 100.0 38 .............................. TCATATAAATCCACGCCGCGAACTTCTCCAACTGCTGT 82565 30 100.0 37 .............................. AGCCTTTTCTAAGCCGAGTTCAACCGCTTCAGCTTTG 82498 30 100.0 37 .............................. ATTTCGAACCTGGACAAGCTGAAAAGCACAATGTACC 82431 30 100.0 37 .............................. TCGAGCATAGCAATCACCAAAGCATATAGTCAAAAAA 82364 30 100.0 36 .............................. TACTACGGTGGTTCTAATGGGGAAGCGCACGACGGT 82298 30 100.0 37 .............................. TCCGCGAGGAAATAGAGTTCAGCGGGCTGGACTCTGA 82231 30 100.0 37 .............................. CAAGCGTGTCATACTTAAACTCAATCACGCGGGCTGG 82164 30 100.0 36 .............................. GAGCAGCGCACGGGGAGAAGGAGCGCTTCAGGCCTT 82098 30 83.3 0 ...A.............C....C..C.T.. | G,AA [82068,82081] ========== ====== ====== ====== ============================== ======================================================= ================== 23 30 99.3 38 GTTGCAATAAGACTCTGGGAGAATTGAAAG # Left flank : ATCTGGAAGCTGAGGGAGCTGGGATTTGAGGTCCTATCACGTTGAGGTTTCGCTGTTCTAAGTTTTCTCCGCCATAACTGCTGGAATTTCTGAAAGTTCTTTTCTCCATCCCATGGAAGGCGATTGTTTGGGGCCAAGAACTGTACCCACAGGTTACCATTATCCAACGGCATTATAACGAAATTTTTTCGGAAATTGGAACACAGGCAGCACGGGGGCGGGAACATGCATAGCTCCACCATAATCCGGTCTTTTCTGATTTGTGGATGGTTTGTTTGCCCATTTTAAATTCCAAGCCCTTTGAAGCCAGGGGAAATCCCGTGCACATCTTTGTTCGCCCAAGGATTGCGGCCGTTCCGCCCATCCAATGGCTCCGGGGACTCCTCGGACTGCCAGAATTGAACGCCTGCCGCGGTTCCCCTGGCGGGGATTTCCAGAAAGACTTAAATATTGGAAGCCCCTCAAAGCTTTACTGGGCGAAACTGGGAAAATTCTCGCCT # Right flank : AAAAGCTGATCTGAAACTCAATGGAAGTTTGAGGGGGTGTGGGGGACGGAACGTCCCCCCAGACAATAAGACTCCCAGAGAACCAACGGCTTCGTCTCGCTTTTTCAGGTTGCCGGTGTCACAGGCAGGAAATCCAGTCCAAAAGGCGACGTCTCACAGGAACTCTCCGAACAGCAGGTCTTCCCTCGCCCCGCCCACCTTCTTGAATATCCTCTCGCTCCAAGAAACGCCGCCCACCTCCCTCGGTGAGTGGGCATCGCTCGCGAAGGTGAGCTTTATCCCGCGCCTTATGCATTCACGGATGAAGTCGATGTCCGGTACCCGGTAGCGGGAGCTTATCTCAAAGGCCTTGCCCCTCGCCTCCGCCAGATCGAGTATTTCCTCCAGCTCGTCGGCGGACGGGAAGCCGATGTAGGGGAAGCTGGCTCCGAAGTGGCCGATGATGTCAACGTTGTCGTCTTCGAGGGCGAGCTTCACCAGTTCCACGTATTCCTCCGGCC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTGGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 2 852193-854437 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041932.1 Thermococcus sp. SY113 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================= ================== 852193 30 100.0 38 .............................. GAACACCACAACTGGCGAGATCCTCGACAACGCTACAG 852261 30 100.0 36 .............................. AATTGGCTGGGGCTGGCTGATGGCTATCATCGTCGG 852327 30 100.0 38 .............................. TTCTGACAAGTACAAGCGCTTCAAGCTGTTCCTTGCAA 852395 30 100.0 37 .............................. TTACTACCCCCTAATGCGCTTAGGTTTCGTTTTATTA 852462 30 100.0 38 .............................. TTTCCAAACCGTTCAACAGCAGAGTCATCACTATCATA 852530 30 100.0 36 .............................. ACCTAAAACTCCAACTTGCATGTCAGGATAGATGAC 852596 30 100.0 37 .............................. AAGCTCGTGCTGTCTGAAGCATGCACCTGTCCGGCGT 852663 30 100.0 37 .............................. CAGATTGGGCAACGCTCACCTTCAACCATATATCATC 852730 30 100.0 36 .............................. CTGGCGTTTCGAGAGTGAGTGAATAGCCATCAAACG 852796 30 100.0 37 .............................. GGACGACCCGAACGAGGAGCGCTACGGCGAACTGCTT 852863 30 100.0 37 .............................. TGCTGCCAAGCCCGCCCATAGAACAATGCCAGTCACT 852930 30 100.0 37 .............................. GCGATTCTCTATTGTGTAGAGCAGAATGCCGGCGTAG 852997 30 100.0 36 .............................. TCTCTCAATGCTTGCCTGGCTCAGGGACTACGAAGG 853063 30 100.0 36 .............................. CTCCCTACCGTTTCGCCTATAAGGGCCACCTTGAAC 853129 30 100.0 36 .............................. CCCAATGCCCCAATCAGTGGGGAGATTAGGGAGCTG 853195 30 100.0 36 .............................. TCGTTTCGAGGTTCGCTTTGTACATGAGGTACATCA 853261 30 100.0 38 .............................. CGACTCTGACTTTCTCTTTTGGGAGGCTGAGCATTATT 853329 30 100.0 35 .............................. TCGGCGGGCGCCCACGCTTCTTTTTGGGCTTCTCC 853394 30 100.0 37 .............................. TCTGTATGAACTGTGGGTTGCTGATTGCCTCGGCAAC 853461 30 100.0 36 .............................. ATGAGTTTTGCCATGTCTGAATTCTTGAATTCATCC 853527 30 100.0 37 .............................. AATACCTGTCCGCCCAACCCCTATGATGCCTAAGTAG 853594 30 100.0 36 .............................. CAATCTCTTTCACTAGGGGTTCAAACAGACCTTCGA 853660 30 100.0 36 .............................. TACTACGGTGGTTCTAATGGGGAAGCGCACGACGGT 853726 30 100.0 37 .............................. CACTCCTAGTGACCCACTCTCCAGCCACCCCTATATC 853793 30 100.0 37 .............................. TTCTGGCCCCCCGTAGTGGAGCCTTTCCATTGCTTCG 853860 30 100.0 37 .............................. TGTTACTCGTCAGCTTCGGTGAAGTGATTCCAGTGCT 853927 30 100.0 38 .............................. CTGTATGTTGAGGCATAATTCGTCAGTATTGGAAGCTT 853995 30 100.0 36 .............................. AGCGGGGGGGAAGAATGAAGTTTAAACCAGTACGGT 854061 30 100.0 37 .............................. CGCTTTAGCCGCTACGACAGTATTGTTCAGCGTATCA 854128 30 100.0 36 .............................. TCGTCTGAAGGAGGTGGTGAAAGGTGGTGTATAGGT 854194 30 100.0 37 .............................. CTGGCTCCGTGACAACCTCCACCCTCACTACCCGCTC 854261 30 100.0 38 .............................. ACTGATTTTAGGTCTTTGTTGCCAGCGGCGTTGCCCTG 854329 30 96.7 49 ..........................G... AGAAAACCCGGTGGAAGTTCGAGGGGGGTGGGGGACGGAACGTCCCCCC 854408 30 80.0 0 AGGA..........TC.............. | ========== ====== ====== ====== ============================== ================================================= ================== 34 30 99.3 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : CCGGGCAGGGCTTTTAGGGGTTGCGATTGTGCGGTATCACGTTTAAATACTCAAAATTCACCTAAGATGGGCGTTTAGGGGGCATATTCAAAAACACCGCCCGCTCAGCGTTTGGGAAGTCTTAAGTAACCATGTGTTGGGATATACCACACTGTTATTTATCTATTCGGCAAGTATGACGAAATTTTTTCAGAATAGTCGGATGGGTCAGGAACGCTCCCAAAACTCCCTGTATCCCTATAAAAGAGGACATTCAAGCAGTCGGAACTGTCTCGCTTTTGATTCCCCGAAATAAGAGCATAAGAAGGCCCGGGAATCACTGAGGGACAAAAAGGCAAGGACCAAAACAAAGCCCTCGCCGCTATTATGGGTGCATAAGGCGCCAGGAATGCCCGGATTGGAGACCCCAACAGGCTTCAAGAAAACCCCTCCAAAGAAAGGCTTATAAGAAAAAATGGGTTTTATTCCTTTATAGGGCAAAAGAGGGTAAAAGTCGCCCT # Right flank : GGCTGAATTGAAAATAGAGGATCAAAAGCTACTCCCTCTGCGCAAGCTCCATCTCAAAGACCCTCTCAAAAACCGCATTGTGGTTTCCGAAGGCCTCAAACATTCTGCCGGAGTAGTTCTCGGAGGCGGTTTCGAGAAACAGCCGTAGGTTTCTGCTTATCTCGTCGCTCATGGGGACGTGAAGGGGCGAGGGTTCGTAGTAATCGAGGCCCTTCATGAGGGCCGTTGAGAAGTACCAGAGCGTTTTCCTGACCTTTCTGCCCTTTATTGTGGAGAAACTTGCCTCCATGCAGTTGAACGCCGCGTGAAGGAGGACTACCATGTCGATCTCGACGCCGCGCTCCAGGAGCCTCTTCCTGCCGGCGTCCTTTCTGAGGTCCGTTATCCTGTAGCCGCTTCTCGTCTGCTCATCGTAGGGCACCTCAATGCCGTAGATGCCCTCCACCCTGGGGTCATAAACAAGGACCTCCGTTCCGCCGACGATGTAGAGCTTTCCGTCG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //