Array 1 5-1084 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN305926.1 Xanthomonas vasicola strain NCPPB 1395 scf_4788_65, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 5 31 100.0 35 ............................... TTGACTCATGAGCACCGTGTGAGCGGTTTTATGTG 71 31 100.0 34 ............................... TGTAGTCTCCCCGTCTTTTTGCGTACATGGGCTT 136 31 100.0 34 ............................... TGTGTCACCTGTACCTCCTTCATCTCTAAGTTGA 201 31 100.0 36 ............................... AACCGCACCGGAAGTGCCCGGGTAGGTGGTCGTGTC 268 31 100.0 36 ............................... ACCTCCCGCCCGAACAAATCCCGCTGGATCAGGATG 335 31 100.0 35 ............................... GCACCAAAGGCTATGGATGCCACCGTGGTGCAGTC 401 31 100.0 34 ............................... CCGGTGACGCCACCGCCGATGCGTATTGTTAAAT 466 31 100.0 34 ............................... TTTACATGCATCCCAAGAAGGGCCGAGGAGAAGC 531 31 100.0 36 ............................... CGGGTCAGGCGGGACACTTGGGCTGTACCGGGATGG 598 31 100.0 34 ............................... AGGTCCGCCTGCAAGGCACCCTGCGCCATCAGAA 663 31 100.0 35 ............................... GTCAAACTCAATGTCAAGCCTGTAGTACATGCCTA 729 31 100.0 34 ............................... AACTGGGGTAGTGCACCTCAGAAATCAGCACTGT 794 31 100.0 34 ............................... CCAGACCGGGGCGGGCACATTACCCTCAATGTAG 859 31 100.0 33 ............................... TCCTGAGGCGATCAGGTCGCTCGCTGACGCCTG 923 31 100.0 34 ............................... CTGTCACTGACTCTTGCCCCCTGGCTACGCAGGA 988 31 100.0 35 ............................... CTGTTATTCAATACGGAAGTCAGGTTTTTGGTACT 1054 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 17 31 100.0 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : AACCG # Right flank : AAAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [3.3-5.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 68469-70879 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN305878.1 Xanthomonas vasicola strain NCPPB 1395 scf_4788_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================================ ================== 68469 31 100.0 33 ............................... CCGGATGGGCTTGTGATGGCGTATATGCCTGCC 68533 31 100.0 34 ............................... TGCCCGCCTTGTACCTGGATGAGGAAATCTTGGA 68598 31 100.0 35 ............................... AGAAACATCTCCGCTGATTCCCGCGCAGCAGGCAA 68664 31 100.0 35 ............................... CGGCCTTGCAGCATACTTGCGGAGACACGAAGATA 68730 31 100.0 33 ............................... CCACACTGTGCGATCAAAGTAAGCTACCTCAAT 68794 31 100.0 48 ............................... CTAGNNNNNNNNNNTGGATGAAGCACAGACCCTACCGCACGCATTGCT 68873 31 100.0 34 ............................... CTAGGGGGCATCGCCTGTGGGACGAACTTGTGGT 68938 31 100.0 35 ............................... ATTTATGCATGGCCTCTCTGTATGGCCCTGTGTCG 69004 31 100.0 36 ............................... TTTAGCCAGTTCACCATCGCCAAGCGTGGGCAAAAG 69071 31 100.0 33 ............................... AATGTCGGGGCAGGCAATTGGCGTAGTAGTACT 69135 31 100.0 35 ............................... CTGCGCCCGGGGGCTCTAGTCTCTCTACACGGCCC 69201 31 100.0 35 ............................... AGTGCATCCCACGCCTCTGCAATGGCGGACTTAAC 69267 31 100.0 34 ............................... AAAGGCCATGGTCCGGGCAACGGCATCCGAATCA 69332 31 100.0 36 ............................... TTTTCGATGCTACTCATTTGCTTCTCCTCGGACCTT 69399 31 100.0 34 ............................... TTCCAAGTCCACCTTGTCATAGCCATACCGATTC 69464 31 100.0 36 ............................... AGGTTAGTCATGCGGACGCGGTAACGCAGGCCGGTC 69531 31 100.0 34 ............................... CTGCAATACATTTTTGGACTTGGCTGGCGCAACC 69596 31 100.0 36 ............................... TCCGAGGCACACATCACTGCAAAGCATTGCAGCGGG 69663 31 100.0 35 ............................... GCGATCCAGCCATTTTTGTGTGCGGAACAGGTTGC 69729 31 100.0 37 ............................... GTGTCCTCCTACGGTAGTGCCGTCATCACAACGCTGG 69797 31 100.0 34 ............................... CTCCCACAGGCGATGCCCCTTAGGCACGTAAGTC 69862 31 100.0 35 ............................... CACCCGATGCTATTGTGAGTAACTGGCCAACGGGA 69928 31 100.0 33 ............................... AACGTGGGAAGTTTGGAGACCTGCAAGGTAATC 69992 31 100.0 35 ............................... TGCGTCACGCGGGCGGTCAGCAGATTTACAGCAGA 70058 31 100.0 36 ............................... CAAGAGACGGCATAAACGTGCCTTGCCTCTGTGCTT 70125 31 100.0 34 ............................... GTTCTCTCTGTTGGTTGGGCTTGCGTCGGTTGGG 70190 31 100.0 34 ............................... TTGCCGACACAGACAGGCATCGAGGCGCACGAAC 70255 31 100.0 34 ............................... CTCTTGTAGATCGCCATTACGCCGGAGACCTTGG 70320 31 100.0 34 ............................... GCGGTCGAGCTTGCGGTAGATGCCGCCGGGAACC 70385 31 100.0 37 ............................... TTCTGCGGCAAGCGCCGGGTCGAGATTACCGGTGGGG 70453 31 100.0 36 ............................... CTCTATCAGTCGGTCTAGCTCGGCGCGTTCGTGGTC 70520 31 100.0 34 ............................... AGCAGTGCTGACTGTCCAATCTGCGATGGGCCCC 70585 31 100.0 35 ............................... ACGCCAGAGTGCGCGGATCTCAAATGACGCCTTAC 70651 31 100.0 36 ............................... GTGAGCGGCCCGTGCCTGGTCGGTCGCCTGGTTCGC 70718 31 100.0 35 ............................... TGGTCTGCGTACCCGAACAAGAAGGGCCGGCAAGA 70784 31 93.5 34 ..........GC................... AACGGCCCGTTGATGATTCGGCACGTGGCGCAGG 70849 31 90.3 0 .............A.A.....A......... | ========== ====== ====== ====== =============================== ================================================ ================== 37 31 99.6 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : AAATGACGCGACTCAAGCCCCATGATGATTCTTGTCAGCTACGACGTCAGCACCAGTTCTCCCGGCGGCGAGAAGCGCCTGCGCAAGGTCGCCAAAGCCTGCCGTGACCGTGGCCAGCGCGTGCAATTCTCGGTCTTCGAGATCGAAGTCGAGCCTGCCCAATGGACTGAATTACGGCAGCAGCTATGCGACCTGATCGACCCGGCCCTGGACAGCCTGCGGTTCTATCACCTTGGCGCGAAATGGGAGACCCGCGTGGAGCACATCGGCGCCAAGCCCAGCCTGAACCTCAAAGGCCCACTGATTTTTTGACGCGAACCGCAAGCGCCCCATAAAAACCGGGCAGGTTCGCAGTCTCCTCAAGCAACTGATTTGCAACAAAAAAATAAATAGACAGCGGATTCACGGGGCCGCATGACGACTTCTCGACTGCTTTTTTCAGCAAGTCCGCGCAATTGCCCGTGTTTTAGCAACGATGGCAAACACTTATGCTAAGGGGG # Right flank : CACTTTAGACTCGCCCGCCAGCCGGACGCTGACCAGGTGCAGGTTGGAGACGCTTGAGGCCTGCATGTAGCACGGATCAATACGCACGCAGATCAAAAATTGGGCTCCGTCCATCAACGCTTGAGCACCATTATTTGACGATGATCGTCTGAGGCGTGCCTGCAAGCTTCCCGTCCACCATCACCTGCGCGGTGTAGGTGCCGGCCGGCCAGCCATCGGGCTTGCTGAAGCTCAGGTTGGTGGTTTCGGCACCGGTGGTGTTCAACGTCGCGTTCTGTTCGCCGGCCACCTGGCCATCCTGGTAGGCCAGCTTCGCCGACAGGGCCACGTTGCTCGCGCTGCCGTCGGTCTTGACCGAGACGATGATGGTGTCTTTGCTGCCGACACTGGTGGCCGGCGTCACCGTCTTGTCGGCTGCGGCCTGGGTGCCGACGGCCACGCTGGAGACCGTCACTGCACTACCCGTCGCAGCGCCGCCATCGGTGCTGGCCGCTCCGGTG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //