Array 1 2681-1719 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVET01000022.1 Fusobacterium necrophorum subsp. funduliforme strain LS_1280 NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2680 30 100.0 38 .............................. GTTAAGGAATTTACTGATGATGTAGATGATATAAAAAA 2612 30 100.0 37 .............................. ACAGGTTCAATGGCGTTACAGGCTAATGTGTTCGACC 2545 30 100.0 35 .............................. ACAAATTATACAGCTAAAGTAAAACTTCCAGAATA 2480 30 100.0 36 .............................. ACAGATGAAATGGCAAGAAGTTTTTCAAAAGAAAGA 2414 30 100.0 38 .............................. CTAGTACAGTCCCTTCTTCAATTCCAAAGTTTTTATTA 2346 30 100.0 37 .............................. GATACGATTTTAAAATTAGAAAAAATATGCGAGAATG 2279 30 100.0 36 .............................. TTCGGAGATGGTATCGGTCTAGTTTGGAAGAAAAGT 2213 30 100.0 37 .............................. CATAATTTTTAAAACAATTTCCTCCCCATTCAACTCC 2146 30 100.0 36 .............................. TAAAATAAAAATTCAATAAATTTTTTCATCAATTCA 2080 30 100.0 38 .............................. CAGTAGATGTATTGAAATTTTCTTTATCTCCGAAATGG 2012 30 100.0 36 .............................. GAGCGGGTGCGGCATACTTAGCAAAGTATGTCGTAA 1946 30 100.0 35 .............................. TGAGGTGATTGATGAAAGCAATCTAGTCAATGCAA 1881 30 100.0 35 .............................. ATGGGCAAGGAGGAATCTTATTTCGAAAAAACTTG 1816 30 93.3 37 ...............G........A..... TTTCTTACTATCTGGAAACATGCTATTTTTTCAACAA 1749 30 70.0 0 ..C........TT..G.A.TT...TA.... | T [1727] ========== ====== ====== ====== ============================== ====================================== ================== 15 30 97.6 37 ATTAGAGTATTACTAAAGTAGAATGTAAAT # Left flank : TTCCAAATGTGGTGGTGATAAAATATGTATGTAGTAGTTGTATATGATATCTCTTTAGATGAGAAAGGGACTTATCATTGGAAAAAAATTTTTCAAATTTGCAAACGATATTTGCATCATATTCAAAACTCTGTGTTTGAAGGAGAACTATCGGAAGTGGATATTGAGAGATTAAAATATGAAGTATCTAATTATATTAGAGATAATCTAGATTCTTTTATTATTTTTAAATCTCGGAATGAGAGATGGATGGAAAAAGAAATGTTAGGAATACAAGAAGACAAAACAGATAATTTTCTGTAGATATTTTCATTGTCGACCTCTCATAAGGTAAAAATCCCAGGACATTGACAAAAGAATAAAAGAACTTGATTTTCCAAGAAAAAAAGTAAAGATAGAAAAATAAAAAAGGGTTTTCTTTTAATTTTTTTTATAAAATAACTTTATCGACAATTATAGTCAAAAAAAGTTATAGATAGCAATGTATTTTAAAGTCTCGT # Right flank : TTGAACTATAACTAAAAAAGAGGTAAAAATGTTATGTTGGATTAAAAATCTGCAATATATGGGTTCATTATTGAAGATTGTTTGAGAGTTTCTTTTGAATTAAAAAAAGGGAGCTTTCATTGTAAGAGAATACGTAAGGATATGGTACACATAATCAGGTTACTGGAACTTCGTCCGACGACATCACCGTGATGTTGACAACTTTAGATTCCTTAAAACAAAGTGAAAGACAAATTAATATGGAAGATATGAAAAAAAGATTTAGTAATTGTACAAATGACGAGATTGACAAGAGTTCAGAAATTACACATGTTCACTCTATTTCAAAAGAAGCTTGCAGAATTTATGTGGAAATAGTGAAAAGTCTGATTATAAATAAAAATTTAAAAGACATCTTAGAGAATTTGGAATGTACAAAAAATTTTCAAGATTAAAACATCTCGATACTTTGTAGGAAGAGCAATATATTATGAATGCTTTAGGAGGTAGTTTGTGATGTG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAGTATTACTAAAGTAGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 10652-11610 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVET01000014.1 Fusobacterium necrophorum subsp. funduliforme strain LS_1280 NODE_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 10652 30 100.0 37 .............................. TAAGGATTTCTTTGTTATCCTCAATATCCTCTCTTGT 10719 30 100.0 37 .............................. TAGATTGCCCAAGCGTGCTGACCCGGGTCAGAATGTA 10786 30 100.0 37 .............................. CGGTAATTTCTTCTCCCGCTTCCAGTTCCAATATCAT 10853 30 100.0 36 .............................. TTTTTTTATTTTTTGAAAAAAGAGTTGGAGTTATAT 10919 30 100.0 37 .............................. TTGGTCCAGTGGTGTATCAATTCCCGCTTGATTCAAG 10986 30 100.0 37 .............................. TTCTCTCCAACTGCATGTTGTGAAATATGTCCTTCCC 11053 30 100.0 35 .............................. AACATACACAGCTTGATACTTTTTTCTCCAAACAG 11118 30 100.0 36 .............................. CAAGTATATGGCAAAGTGTCGAAATTTAATCTTTCA 11184 30 100.0 36 .............................. CAGACGGAAAGCCCATTTTTTGCAGTTTTTTATAAA 11250 30 100.0 36 .............................. TTAAGCGTCAAATTGCTATTGATTGTCATCTCATTA 11316 30 100.0 36 .............................. AGTCTATTTCCATAGCAATGTAAGATACTTCTCCTT 11382 30 100.0 35 .............................. AAAATAGCCCCTGCCAAAGGAATTAACACTTCTTT 11447 30 100.0 37 .............................. TCTTCATGTACTATGGTTGCAAAACTATGCCGTAAAG 11514 30 100.0 37 .............................. TTCTAGGAGCGATTTTTTTAAGTGTTATCTCAATCTC 11581 30 83.3 0 ..T.....A......T.T...........G | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 98.9 36 CTCATAATCGAAGCAGACTGAAATTTAAAT # Left flank : GTCAGCGTGAAGAGTTGATGAAATATACTTTGACTGTAGAGTCTTATCTTCTTAAAGGAGCGAAAATAGAGAAAAAGATAGCAATAAATTCTTATCAAGAGATAAAGATAGTCTCTTGTGAGTATGATTTTTGGGTAGGATTGGGGAAGATAAATAAGGCAAAAGAGAAGGAATAAGATAAAAAGGAGTTTCATTTGTAATAGGATTTGTATGAACCTGGAAATGTTTTAAGTTGTTACCAAAAGAAAAACATTAAAAACATTTTTAAGGGTTAACGATAAAAAAGTATTGAAATGAAATAATATGAGAGTATTTTTTTGCTTGTCGACCCTCAATAATGTAAATCTCCTAAGAGGTCGACAAACTATTTCTAGTAAGCGACTAAAGATGATTTTTGACATTTTTTGTTTGTTGAAATCAATAAAAAATGATACAATTACAAGAGGTTGACAAATTTGATGGTAAAAATTATTTGAAATAAAGAACTTTATCTTATGCGG # Right flank : GATTTTTTTTGTAAGGACTGCTTCAGGGTAGTCTTTTTTTTATTTAAAATCGTGCGAGTATCTTGCGAAATTCATAATGATTCATTAAAATAACATTGAAAGTTCATGAAAAATATCTTGCATTTATCGTGTGAAAACATTCCTAAAATTTTTATAAAAAAAGTTAAAATATTTTAATTAAATGTATTTATAAATAAATAGAAATAAAGTATAATAATAGCAAGAAGGGAGGAAAAAACAAAATGTTTGAGCTAATTGGGAAGGTTCTTGTGATACTTGAAGCTCTTGAATGGATTGTAAAATTCATCAAGTGGTTAAGAAAAATCATAAGGAGACACAAAGGGGAGTAATTCTCCTCCTCCCTTCCCTTCCTAACTAGCAAAAAAGGAGGTTGATATTTCGTGGAATGGTGGAAAATTGCGGTTATTGTGCTTGCTATTAGTAAAATAGTGGATATTATCATTTGGATTGTAAAAAAGATAAAAAAATAAGAGTTTACA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCATAATCGAAGCAGACTGAAATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //