Array 1 127527-126889 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBOT010000008.1 Escherichia coli strain FT11 NODE_8_length_254985_cov_39.405182, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127526 29 100.0 32 ............................. CAACAAAACGCTGGAAGCCGGAACAGATATCT 127465 29 100.0 32 ............................. CTTATTGAGTTGGCACAGGAATTACATGAGGA 127404 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 127343 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 127282 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 127221 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 127161 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 127100 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 127039 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 126978 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 126917 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 154536-153226 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBOT010000008.1 Escherichia coli strain FT11 NODE_8_length_254985_cov_39.405182, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 154535 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 154474 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 154413 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 154352 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 154291 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 154230 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 154169 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 154108 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 154047 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 153986 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 153925 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 153864 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 153803 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 153742 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 153681 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 153620 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 153559 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 153498 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 153437 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 153376 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 153315 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 153254 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //