Array 1 229169-230844 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVSL010000003.1 Escherichia coli strain F105 3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 229169 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 229230 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 229291 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 229352 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 229413 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 229474 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 229535 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 229596 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 229657 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 229718 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 229779 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 229840 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 229901 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 229962 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 230023 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 230084 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 230145 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 230206 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 230267 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 230328 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 230389 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 230450 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 230511 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 230572 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 230633 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 230694 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 230755 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 230816 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 246346-246924 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVSL010000003.1 Escherichia coli strain F105 3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 246346 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 246407 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 246468 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 246529 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 246590 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 246651 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 246712 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 246774 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 246835 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 246896 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //