Array 1 1859740-1854306 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035108.1 Geovibrio thiophilus strain DSM 11263 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1859739 28 100.0 32 ............................ AGATAAAAAATATGATATTATATTAGCAGATC 1859679 28 100.0 32 ............................ AGTACCATGTATCGCCGCCGGGATTTTCGATG 1859619 28 100.0 32 ............................ TTCATTGACACCCTCGCTAACAGGAAGGGTAA 1859559 28 100.0 32 ............................ ACCGTCAACGCATTCACGGTAAAAAGCGTAAA 1859499 28 100.0 32 ............................ GATAACGGAGCCGTTCACCAGTTTCTTGATGT 1859439 28 100.0 32 ............................ TTTAAAAACCGTAGATGATATTAAATTCACTT 1859379 28 100.0 32 ............................ CAAAGTGCTAAATAAGCCCACATGCGGCGGTC 1859319 28 100.0 32 ............................ TTTAAAACTGTTCCGAACCTTTCCGAACCATT 1859259 28 100.0 32 ............................ TAAAACTTCTTCTTCAGATAAACCTGTACCAT 1859199 28 100.0 32 ............................ TATGCTACTCACCTCACCTTTCAGACCTCAAC 1859139 28 100.0 32 ............................ TATCTCAATTTCAGTTCTGATAACATTCTCTT 1859079 28 100.0 32 ............................ GTTGGGGAAGGTGCTTACTCTGCTTCCGCAGA 1859019 28 100.0 32 ............................ CGCGCCGGAGCTCACATAAAAGCCCCGCCCTC 1858959 28 100.0 32 ............................ GATGCGGATGGGGTTGTTAAAGGCTCGGTTCT 1858899 28 100.0 32 ............................ CATCCCCACCAGTGATCTATGTATTCATCACT 1858839 28 100.0 32 ............................ CGTGAGCGTCTGCATACCCATCGACATCAGGG 1858779 28 100.0 32 ............................ GCTGCAATACTGCCGTTCACAACCATGTTCAT 1858719 28 100.0 32 ............................ AACACGTCAGGCTATATGGCACACTCCAACAC 1858659 28 100.0 32 ............................ TCAAACAGCCAGCGTTCATAAACCGGCTGACA 1858599 28 100.0 32 ............................ TCGGAACATATCTGAAAACAAAGAATCTTTTC 1858539 28 100.0 32 ............................ TTTTGCTCATCAGAGCGATCAGCGGTGGGGAT 1858479 28 100.0 32 ............................ TGTCTCACAAAGTGCTTTCAGGTCTGCGAAAA 1858419 28 100.0 32 ............................ TGTAGCTTCTGATACTGCTTTAAGCTTGCGTT 1858359 28 100.0 32 ............................ TGTAGCTTCTGATACTGCTTTAAGCTTGCGTT 1858299 28 100.0 32 ............................ TTGAGATATGTTTCATCATCAGGTTTTGAAAA 1858239 28 100.0 34 ............................ CCGCCGAAGCGGGATAATCAGCATGGCTGAACCG 1858177 28 100.0 32 ............................ GCACTCAGGCAGGGATTTACAGAGCTTCGCAA 1858117 28 100.0 32 ............................ ACGTTTGACCCCAAATTCCCAAGAAACTTAGT 1858057 28 100.0 32 ............................ TGAAATAACGCACACATCGGTAAAGTTCCCGT 1857997 28 100.0 32 ............................ TTTCTGCGCCACAGCCTCAGCTATCGTGCCGA 1857937 28 100.0 32 ............................ TAATAACCAAAAAAATCTTTCTCATTGTACTC 1857877 28 100.0 32 ............................ TTTCGTCCATGATTACATTTAACATCATTGAC 1857817 28 100.0 32 ............................ TAATTTGGCTGTTTTTGGTAAGTTTTCTTTTC 1857757 28 100.0 33 ............................ TGTAACTGTTATCGTAGCACTGATATGCTGCAT 1857696 28 100.0 33 ............................ CTGAACAATATAGAATGTTGGTGCAGACTTATC 1857635 28 100.0 32 ............................ TGAAGATAATGGTGTTTTTATAATAGGTATGC 1857575 28 100.0 32 ............................ AAAACACTTAGCTGTTTCATTAGAACGAGTAA 1857515 28 100.0 32 ............................ ATGTCCTCATACTCAAATTCAACCTGTATGCG 1857455 28 100.0 32 ............................ AAAACGCACAAGCGAGTGACGAGAAAAGCGGC 1857395 28 100.0 32 ............................ GCCCGGTTGAGAGCCAGAAAACCAGATATTTA 1857335 28 100.0 32 ............................ CGTTCGCATCGGGGAAATTTTCCACGATAAAT 1857275 28 100.0 32 ............................ AATTAGCGAATATACTTATAAAATAAATATAA 1857215 28 100.0 32 ............................ TTAATGCAGGACCGGTTTTAACAGGCATAACC 1857155 28 100.0 32 ............................ CTGTGCTTATCTCGCTTATGCGTGCGCCTTCT 1857095 28 100.0 33 ............................ CGTTAGCGGCGGTGCTAGGTGGATCATACATAG 1857034 28 100.0 32 ............................ GTTGGCTTTGATGATGTCTGGGCAAACGTTGA 1856974 28 100.0 32 ............................ TCTGCTATGGGGCTGGTTCCTTCGTATTCCTC 1856914 28 100.0 32 ............................ TTCAAGCTGCTGATTTGTCATAACGTACATAA 1856854 28 100.0 32 ............................ CCGTGATGTTGCCAGAACCCGCTTAATTGCAT 1856794 28 100.0 32 ............................ ACATTCCAGAGCTTTCGCCCGGAGAAAGTGTT 1856734 28 100.0 32 ............................ GTTCTCGTCAAGCCCGTTAAAGCCTCTTACGA 1856674 28 100.0 32 ............................ TGCGTATCTGTCGATCCCGTTATTCGCTGTTC 1856614 28 100.0 32 ............................ ATCAGTTTGCGGCGACTGTGCATGTATGCACG 1856554 28 100.0 32 ............................ GTATGTAACGGTTATGGTGTTTGCGATCCCCA 1856494 28 100.0 32 ............................ TAAAGCAGATATGCAAATAAGGTATTGCGTAC 1856434 28 100.0 32 ............................ AAGAGAGTCATAAATATACACCGTTGCGTTTT 1856374 28 100.0 32 ............................ GTTTCTTGATCGATATACCACGAAATCATTTC 1856314 28 100.0 32 ............................ TTAATAACTTCTCTGAACAGGCATTGCCGCAT 1856254 28 100.0 32 ............................ AGCATCTCCAGCATCCTTTCTTCAAGTCTGTC 1856194 28 100.0 32 ............................ GGAGGAAGAACCGGAAGAAGATGCGCTTGAGC 1856134 28 100.0 32 ............................ TCAAGAATCAGGACAGACCTGTATTGTCCCGA 1856074 28 100.0 32 ............................ AAAACCCGCCGGAAACAACCCGCCGTGGATAT 1856014 28 96.4 32 ..........T................. CTGAGTGTACACAGGGGAGGCAGCCGGTTTCT 1855954 28 100.0 32 ............................ GACACAGCACTTGCAAATAGATATGCTTCACA 1855894 28 100.0 32 ............................ TTTGTCAATTTTTCTGACTTCTTTCTTTACAG 1855834 28 100.0 32 ............................ CTTATAGCTCACAGCATAAGCTGAATTACTGA 1855774 28 100.0 32 ............................ ACTGGAGAGAAAGCGCAGGAGAGACGGCACGG 1855714 28 100.0 32 ............................ TTGTAACGCCTGTAACTGGAGCATCTGCCCAT 1855654 28 100.0 32 ............................ CTCAACGATGCGGACTTTTTAAGTCCGCCAGA 1855594 28 100.0 32 ............................ TGCTTAAAGAAGCGGGCGCTAATTTCGACAAG 1855534 28 100.0 32 ............................ TTTCAGGATGCTTTCAACCCCACGGAGCATAT 1855474 28 100.0 32 ............................ GGTGAAAAATGGCGGAATGTGTTGTTTGTGGT 1855414 28 100.0 32 ............................ TTCAAAGTTCGGGGCGACTCAATGAGCCCGTA 1855354 28 100.0 32 ............................ TGAAAAAATCCTCATAACTATACCTGTTTACC 1855294 28 100.0 32 ............................ ATTTGAGCGGGCGAGAACCTCTTCTCCGCCAG 1855234 28 100.0 32 ............................ ATGCGGGTTTTTTGTCATTGATGCGGAATGGC 1855174 28 100.0 32 ............................ TAATTTTTTGGCGGTTCACGCCGCCAGTATAA 1855114 28 100.0 32 ............................ CTGTCCATTCGGGCAGGGCAAGCCCCCGTTGC 1855054 28 100.0 32 ............................ TTAACCTTGAATCTGGCGGACTTAAAAAGTCC 1854994 28 100.0 32 ............................ TTTGAGGGTTTCCGTAAGAACTTCAAGCATTT 1854934 28 100.0 32 ............................ AACCCCTCTATCTCCCCGGTTTTTACCATTCG 1854874 28 100.0 32 ............................ CTAAAGTTCAGTATGTTGAATCTAAAATTGAT 1854814 28 100.0 32 ............................ TGCACCTCGGTTTCAGATCAAGCTCGTTCTAC 1854754 28 100.0 32 ............................ ACTCCTATATGCTGTGCGCTGATAGCATCCGC 1854694 28 100.0 32 ............................ TGAAAGCGGCCGCAGTAAAGGGAAGTGACAGC 1854634 28 100.0 32 ............................ ATGAATATCGAACGTGATATATTGGCTGCCTT 1854574 28 100.0 32 ............................ TGTATACGGAGAGCTTCTATTTCACCACATCT 1854514 28 100.0 33 ............................ TTCGCACAATGGCAGAGGCTATATCTCTTGCGA 1854453 28 100.0 32 ............................ TTTGATGTTATTACGTCCACCACAGAGGGCAC 1854393 28 100.0 32 ............................ CGATACGGATGGTGACAAGCCTTGATACTGGC 1854333 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 91 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAAGCGCTGGAGAGCGTCGTTTTGCATCCGGCGATAGAAAGGACTGCTGATTATGCGGAAATAGGGCGCATTCGTCAGGTTCCTGATAATGCTGCCTACTGCATAGTAAGCAGGGTACAGGCAAAAAGCAGCCCGGAACGTCTCCGCAGGCGCAGTATTAAAAAGTTTGGTATGAGTGAAGAAGAAGCAATGCTACGAGTTCCAGACTCAAAAGCGAAGATGCTTGAACTGCCTTTCATAACGCTAAACAGTAAAAGCACAGGACAGAAATTCCGTCTCTATATACGCCATGAAGAGGCAAGCAACTCCGGAAATGGAAAAGGCTTCAGCACATATGGACTGAGCGCTGTTTCTGCCGTTCCGTGGTTTTGACCCTTTTTTTCAGTAAAATTAGAAACCCTTTTATATCAGTCATTTTTAAAATAGCTGAATAAAAGGGTTTTTTGTATGAAAAATTTGTTTGTTGTTTATGTGTAATATTTTTTGCTATTCTATCTACA # Right flank : TAAGCAAAAAGTAAGGCGAACATCAACTGATAACGATAGGGTGGGGCTGGCAGTTTTTGCTTACTTGATTTTCCCCCTAGATCTGTTTTTACAACATGTGATTTTGTGACAACAGGTTAGGTTTCTTTTGGTTAAGGGAACTTTTCTAAAGTTGATCAATGACTTCCTTTTGTTTCAGAAGGAACAGCTCAAAATTCCTTGAAAATTCCCAGTAAAGTTCAAGCACCCTTTCTCCTTCCTCTGTAAGCTCCGCTCCCCCTCCGCCTGCGCCGCCTGTTTTTTTGACCACAAGAGGTTTACGCGCAAGCGAATTCATGGTGTCCACCATGCCCCACGCCTTGCTGTAGGACATATTGAGCATAGATGCCGCTTTTGACATGGAGCCGTGCTGTTTAATGAGTTCAAGAAAGTGTATTTTGCCCAGTCCGAGAAAGTTTTTTCCGTTTTTATCGATCCAGATTCTGCCGCCATATGTGTATTCGCCTGCGGTTTTGCTGAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1871031-1868725 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035108.1 Geovibrio thiophilus strain DSM 11263 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1871030 28 100.0 32 ............................ TTTAGCATTTTTTATAGTTTGACTAGCAAATA 1870970 28 100.0 32 ............................ TTATAAAACTATTAAAATTAATGGAGCAGAAG 1870910 28 100.0 32 ............................ AGTTTCCAAGGCACGGTCGTTGATGAAATAAA 1870850 28 100.0 32 ............................ ATAATTTCATCACGCCCCGCATTCGAGAAAAA 1870790 28 100.0 32 ............................ TTAACAGCGTAATCCTTATCACACATTAAAGC 1870730 28 100.0 32 ............................ TATTCCACCAGTTCTTGATTTTAGAATTTCAT 1870670 28 100.0 32 ............................ TTTTGGAAGTTTTACATTTTCATGTCTATATT 1870610 28 100.0 32 ............................ CATTCCGATGACGGATGTGCGATAACTTCGAT 1870550 28 100.0 32 ............................ TATAATATGATCACCAGTTGATGAAACTTCAT 1870490 28 100.0 32 ............................ GTAATCCTCTGCAAGACAACGGAGATAGTCTT 1870430 28 100.0 32 ............................ CTGATCTGGTTTTTCTCCAGTCCGGAATAATC 1870370 28 100.0 32 ............................ TGCAGAACCATCGGAAACGAAGATGATTGACC 1870310 28 100.0 32 ............................ TACCTAAAGCCCCTCCCCCACCTTAAAAAGGG 1870250 28 100.0 32 ............................ ATAAATAGAGAAGCCAAAAAGGGTATAAGGGT 1870190 28 100.0 32 ............................ CCTAGCAAAAAAAATCAGCGCAATGGGCAGCT 1870130 28 100.0 33 ............................ AATTACGAATCCCCGCAATTTTGACGGCAGTAG 1870069 28 100.0 32 ............................ GATATGCAAACGTGCCGAAGCGCCTTTGGTTT 1870009 28 100.0 32 ............................ ACGCTCGGCGGGCGTGTGGCGCGCCGTACGCT 1869949 28 100.0 32 ............................ GCAGTCGAACCAGTCAAAACCGTGAGCTTGTC 1869889 28 100.0 32 ............................ TGAACACTTCACAAAAAGCTGCCCGCTGTCGT 1869829 28 100.0 32 ............................ GCTCATGCGCCCCGTGAGGTCAGCGAGTATCA 1869769 28 100.0 32 ............................ TGTCAGCCTCAGCCTGTTTCAGTGTGGTAATC 1869709 28 100.0 32 ............................ TGAGAGCAAAGGAGACTCCTTCCCCACTACCC 1869649 28 100.0 32 ............................ TCTCTAAGTATGTCCCTGATGTTCCTCGGAAC 1869589 28 100.0 32 ............................ GCCAGATTCAAGGTTGACGAAGATCAGGCACA 1869529 28 100.0 32 ............................ ATTCAAAAGCCGGGTGCGATCTCGGTCTGGCT 1869469 28 100.0 32 ............................ TTTCAGCCATGCGGCGGAGCGCTGTTCATAAC 1869409 28 100.0 32 ............................ AATGGTAAGCCTTTCCTCTAATAGTATTTTCT 1869349 28 100.0 32 ............................ TTAGCCTGTCTCTTCAGCAGCGGGCGGCAATT 1869289 28 100.0 32 ............................ TTGTGATTTATCTTGCATTACAGACGATTTTC 1869229 28 100.0 32 ............................ TCATCTCGCCATTCCGCATCAATGACAAAAAA 1869169 28 100.0 32 ............................ AATATAAATGATAGACCGCACGAAAAATGATC 1869109 28 100.0 29 ............................ TTTTGCCTTATCTTCTTCTTCTTCTTCCG 1869052 28 100.0 32 ............................ TGTCAAGCTTAAGAGCCTTTTTCTAGCTGAAA 1868992 28 100.0 32 ............................ GGAATAATCTTCGGCTGAAAACTCAGATACTT 1868932 28 100.0 32 ............................ TTAAGCTGTTTTCCTGCCACTTTTCCCCCTGT 1868872 28 100.0 32 ............................ ATCGACCCCACATTTCGGCTACAGCGCAGATC 1868812 28 100.0 32 ............................ GCAATGCGGGCATTCATAAGAGACGACACCGT 1868752 28 78.6 0 ......................ATTTCT | ========== ====== ====== ====== ============================ ================================= ================== 39 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAAGGTGTAAGTAATGACCTATTGTAATTGTAATACTTATTACAAAGTACATCTTTTTCTGTTTGGAAGATAACAAATGATTTCCCTGAAGGTGTTTTATATTATAAAAAAAGGATAGGGTATATTGAGCAAATGCCGCTTTTCTCAAAGTTTTTCGTGTTAACAATGATAAAAAGTTTTGAACATTTTATCAGTAGTGAAAAATTAAACACATGCTTTTCCAAAACGCTGTTTATTGTAGGCAAGCTTACAAAGAGCCGAATGCCGGCTGAAAAAGAATGTTCAGAAGATTTTAAAAAAAAATTCAGTTTCTTTGTTTTTTATAGGAAACATAAATGAAAAATAAGATGGCTTGGGGCTGGCTTATTCTGCCCCTTTTTTTTATCTAAAAAATAACATCAGCATTATCAATGCCATATATAATGAATTGAAAAAAGGGTTTTTCTGATGATTCCAATATTTTCTGTTTTACGCTAGTATTTTCTGATATTAAATGTTCA # Right flank : ACACCCAGTTTTCGAGTTTCAGTTTTTTTATTCTCTCAAATTCCTTTGTGTTATTTGTTACCAAAGTTGCATTAATTGAAACTGCATGGGCGGCTATGAGCATATCCATTGAACCTATGACATTTCCATTTTTTTCAAGTTCGGCTCGTATTTCTCCATAAGCCGCCGCCGCTGCATTGTCAAAATCCAAAATCTCAAGCGGCGCCACAAACAGTGCTAGGGCGTCCCTGTTTTTATGAATGTTCTGGCTTTTACTTACACCGTATTCAAGTTCAGCAAGGGTTATAACGGAAATGCCGATTGAACCCAGAGGAAATGATTGAAACTTATCAACAATTTCCATAGGCTTCTGTCTGATGATATAAATGCAGATGTTCGTATCCAGCATGTACATTAAAAGACCTCTCTTTCCTGAATCTCAGGCTGGTTTCTCTCGTTCATAAATGAGCCGTCAAACATATCAAGAGAGAGCCTGAAATTTTCCCAGACATCGCCTTCTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //