Array 1 23367-24371 **** Predicted by CRISPRDetect 2.4 *** >NZ_RZDJ01000071.1 Escherichia coli strain URMC_194 NODE_71_length_24493_cov_22.437126, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23367 29 100.0 32 ............................. TTTGCTGAGTGTGCATACACACTTGAACATCA 23428 29 96.6 32 ...........................A. CTATCAGTAACAACCTGGTAAATATCGGTTTT 23489 29 100.0 32 ............................. TGCACGCCCTGCCGGAATCTCCCCTCGCTCTC 23550 29 100.0 32 ............................. AGTAAGCCGGTTGATTATCGCCAGGGATATTA 23611 29 100.0 32 ............................. AGCAACAGGTATTTCATATGGCCTGCCGTGCT 23672 29 100.0 32 ............................. GCCAGCGGCGCTGAGTACGACGACCTGATTAA 23733 29 100.0 32 ............................. TCAATACAACAGCAATGCTGGAGCTGGAAAAA 23794 29 100.0 32 ............................. TGGTGGGATAGCTGCTCTGCCAGCGTGTCGCG 23855 29 100.0 32 ............................. TGGGCGCAGCTCATGTATTCCAATAAGGATAT 23916 29 100.0 32 ............................. AGATTCGCGCAATGTACGGTAAAGACAGCACC 23977 29 100.0 32 ............................. GGATTCTGCACTCTTTGATGTAATGGTACTGC 24038 29 100.0 32 ............................. TTTGTTTTGATGATTTATCAGTATATGAATTG 24099 29 100.0 32 ............................. ATTTTTGCGCGGCCTGCATGAAACCAGTGGCA 24160 29 96.6 32 A............................ ACCGTTGCTACACATATGATCAGGCATGTGCC 24221 29 100.0 32 ............................. GACGATGAGACGCCCTGGTGTGCCGCGTTCGT 24282 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 24343 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17140-17717 **** Predicted by CRISPRDetect 2.4 *** >NZ_RZDJ01000008.1 Escherichia coli strain URMC_194 NODE_8_length_112950_cov_22.673754, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17140 29 100.0 32 ............................. ATTTTCGCAGCGGGTAACCGCGCCCGGCGATC 17201 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGCCTGGGTGGAAAG 17262 29 100.0 32 ............................. TGGGGCTGAGCATGGCTAAACAACCGAGGCGC 17323 29 100.0 32 ............................. GTCAACTGGCACCACAGGATGATGGCGGCGAA 17384 29 96.6 32 ............C................ CAGGCGCTCGACGCGGCACGCAGTCGGGCACA 17445 29 96.6 32 ............C................ CAGGTCGACCGACTGGAGGCGGAGATTGTCGG 17506 29 96.6 32 ............C................ TGTTGTTTTTCTGCCGGATTAACGCGGTGCGA 17567 29 96.6 32 ............C................ TTGTCGGGCTTGTTCGGCGCGGGTTGTTAACT 17628 29 96.6 32 ............C................ CCAGCGAAGGACTTGCTCGTGTGGTTAAAGCC 17689 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCTTTCACCAGCGGTAGCATTATCCGTATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTGACATCGTGCCAGCTTGTTCCCGCAGGGAAGGCGGCGGTTTTTGCACGTTGCTGATAGCCATCCTTATTCCCAAGATTCCAGTTAGTTGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCAAAAACTTCCGCGTCGTTACAGCACCCGGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //