Array 1 12077-11022 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRHL01000008.1 Haloarcula sp. K1 K_1_contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 12076 37 100.0 35 ..................................... GCAGTCGTTCCCACAGAAGCGCCGCCCATCAGCGT 12004 37 100.0 33 ..................................... ACCTCCGGCAGATGCTCAACGGCCTTCGTGAAG 11934 37 100.0 37 ..................................... CAGTCGGTCAGTACATCAGCAATAGACATCACGAACG 11860 37 100.0 37 ..................................... TGGAAGCGCACCGTCCCGCGCACCGTCCCGCTGTACG 11786 37 100.0 34 ..................................... ACCACTACTCAGGAAGATCACGACCATAGCGGCC 11715 37 100.0 37 ..................................... ACCTCCACAGAGCGGCCACGGACGAGAGCGAGCGGAG 11641 37 100.0 39 ..................................... ACGGTCTATCAAGGCGCTCACGCTCGAAAACGTCTTGAC 11565 37 100.0 36 ..................................... CTCGGTCGCCCACAGTCCGTTGAGCGTCACGTTGTT 11492 37 100.0 35 ..................................... AACGACGTGGTCGACACCGACGCCGGCCCGATGCT 11420 37 100.0 36 ..................................... AAGTCGACCACACCACCACCGACGGCGTTCTCGTCG 11347 37 100.0 33 ..................................... GGTACTCGAAGTACTGTTGTCTGAGTATGTCCG 11277 37 100.0 36 ..................................... TCTCCGTGAATATCGGTGATGTTGCTGAATCGGCAG 11204 37 100.0 36 ..................................... AGGGCCTGTTCTCTGGCTTCGATTTGAGCCCGCTTG 11131 37 97.3 36 ..........C.......................... CACGACGTGGTTATCCTCGACGGCGCTGCATCGACT 11058 37 89.2 0 ..........C.........T..............TG | ========== ====== ====== ====== ===================================== ======================================= ================== 15 37 99.1 36 GTCGAAGCGGTCAGAAAACCCGAACCGGGATTGAAAC # Left flank : GGCAGCAGACGGTGAGCGAATTGTTTCGCTCGGTGGCGGAGCACGGGACGTGTTGCTGCCATTCACGATTGCTGCAATGACACACGTTCGATTGCTGTCTGCTGCACTGTTTTTCAGCGATCTTGATGGAACAGTGCGGGAGTGGGATCTTCCTCGGTTGACTGCCCAAATTCAACAGACGACGATGTCAACACTCCAGACGATTGCCAATGCAGAGGGGGCAATCTCGATACCCGACCTGACTGCGGAGACTGGCAACTCGAAAAGTACGGTGACACGCCACGTCACCGCACTTGCCGATGCAGGAGCGGTCGAGACATGGACAGACGGGAAAACCAAGTTCGCACAGGTGACTCTGACCGGACAATTGCTCCTTCGAGATGATGTCTGACTACGTGGACCTTTATTAAATGAGTGTACAGCCCCGGTCGACGTAACCGGGTCTTTGTTTGGCGGGCTGAGAAAGACTTTTCAGCCCTATAACCGTATTTTCACCCCCT # Right flank : TCGACACTGCGGGTGAGCGATTAGCGACAGCACAAGCTTGTCGGTCGGGTGCCGCTCTGGCCACTCATTGAGGTGATTACTGCCTCCCCAACGTCAGCTCATCGACGTGGTCAACCCTCAGTACTCGTCAAACGACAGAGCTAAAGCTAACAGACCGGGCAATGGCGTGCTCGCGGGCGTGCTGGCAAGCGGTTTAGTGTAGCCCTTCAGTCCGCGACAGTCCCTCCATCAGTCAGTGCCGACGGCTGCTGTCCGCCACCGTAGGAGCCCAGCGTCGTCTCGCCGCTGTCAGCAAGCTTCGAGTCGCCGTCGGCGTTCGCGAACTCTCTGATGGTCCGGGCCATATCGGGGTGGTCGATTTCGAGTTCGGTCAGATTCAGGCGCAGCACCTGCTGTCTGTCTGGTTTGCCAGTCCCGATCCCGAAGTGCTCAGCGGCTTCTTGCATCACTTCATGCATCACTGGTCTCGAAATCTCATCGTCGAACACCGCTTCCCGAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAGCGGTCAGAAAACCCGAACCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA // Array 2 22804-25154 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRHL01000008.1 Haloarcula sp. K1 K_1_contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 22804 37 100.0 36 ..................................... CGCGGTCATCGGTCAGTTGCGTTAGATACTGGGAAC 22877 37 100.0 33 ..................................... GCCATGCGTCATATCCTCACCGTAATAGGCCTC 22947 37 100.0 35 ..................................... TCATCGAGTCCGGTTGTCCCTTTTCGAGGTAGTTG 23019 37 100.0 35 ..................................... AGTTCCTGCGGACCGTCAACGCGGATGTGCGAACC 23091 37 100.0 36 ..................................... TCGTTGTTGGCGATGTTGGTCACTTCTTTCGCGGTC 23164 37 100.0 32 ..................................... GCGTCGACGGGTGCGGTCAGTCGGGCCGCCCA 23233 37 100.0 37 ..................................... AGTGTCGGTAAAAGACTACGGGCACAGATAGGCTCAG 23307 37 100.0 35 ..................................... GCCGACAGTTGCTCACCCTGCGGTCCCGGCCGACG 23379 37 100.0 35 ..................................... TAAAAATTGGACGCTCAATCGTTGATAGTGATGGT 23451 37 100.0 34 ..................................... CGGTCGGTGGCGCTCAGGGTATCGCCTGCGCCGG 23522 37 100.0 37 ..................................... CGACTGGGGTGATGATGACCTTGATGACCGAACTCAC 23596 37 100.0 35 ..................................... AGCTCCGCACGCCGGAGCCCAGTATCATACAGGAG 23668 37 100.0 33 ..................................... TTAACCCCGGGGCTCGTGTCCACAACACGCCCC 23738 37 100.0 38 ..................................... ACGGTCCTCAGCGACGACTGGTCGATGGTCAAAGAAAA 23813 37 100.0 34 ..................................... AGCAAGTGCGGGCCGTCACAGCGACCAACAACAC 23884 37 100.0 32 ..................................... TGTTTGCGGGTCGCTCGACCGGCAAACTCGGT 23953 37 100.0 36 ..................................... TCACTCATCGGTCGCTCCCTCCTGAGATGCTCGGAC 24026 37 100.0 35 ..................................... TGATCGGGCCGGACTCCTCCACTGGCTAACCAACA 24098 37 100.0 35 ..................................... GCCTCGGAGATATTGGAAAAGAAGGAGGTATTGCC 24170 37 100.0 37 ..................................... AACTCTCGCAGCGGTCGAAGAACCCGAGTTTCGTCAT 24244 37 100.0 35 ..................................... GACTCTCCGACACCGATCCAGATGGCAGATGCATT 24316 37 100.0 38 ..................................... AAACTCCGTAAACTCGCCGCTTTCGGACGGCGTAAACT 24391 37 100.0 37 ..................................... CTACCTTGACGCCATCCAGTCGTTCTTATTCGGCGGC 24465 37 100.0 36 ..................................... CCAGAAACTGGGAAGTACCACGTAACAATTGCTGCC 24538 37 100.0 35 ..................................... ACGTACTCGCCGCCAGAGCCGGGAACTGTCCGAAT 24610 37 100.0 35 ..................................... AATCTGGTATAGCGCGGGCGGTGCGGCGCTCTACG 24682 37 100.0 36 ..................................... AAAATGTGGAGGAACCATGACCTCCGGAGAAATCCA 24755 37 100.0 33 ..................................... TTATCAGGGTACGTTGGGAGTACCAATGATCCC 24825 37 100.0 35 ..................................... TGTTCGCTCCAGACCCGGGCGACACGGTCGTCGAT 24897 37 100.0 39 ..................................... AGCATGACACCCACGAAGCCGGCGAACTGCGGGACTGTC 24973 37 100.0 35 ..................................... CATATGGCAGATTTCTCCCGAGCGGAGACCGAGCC 25045 37 97.3 36 ...............................C..... TTAGTTGTATCGCTGCTGCTCGTGGGCACTGCACCG 25118 37 89.2 0 .....................T.....A....A...T | ========== ====== ====== ====== ===================================== ======================================= ================== 33 37 99.6 35 GTCGCGACGGCCAGAAAACCCAGCACGGGATTGAAAC # Left flank : TCGAATACTCAGTCACACGCCGAAAGGCTGTTCGGCAGCAAACAATCTTGTTGCGGAAGGCGATTAGCGAGGAACTGGACGAGTACCACGCCCTGACCTTTTCGAAATGACCATGCGCTTGGCAATAGCTTACGACGTAAGTGACGATGGAAACCGTCGGCAAGTGTACCAAACACTCCAGCGATACGGAGCTTGGCGACAGTACAGCGTGTTCGAGGTTGATGTGACCAAAGCCGAGCGTGTCGATCTTGAGGACGAACTGGAATCACATATCGAGCCAGCCGATGGTGACCGAATTCGGATCTATCGGTTGTGTCAGTCCTGTCAGGACAACACAACCGATATTGGATCCGACCCACCCAATGAGCAATCCAACGTTCTCTGAACAGAGCTACGTGGACCTTTATTAAATGAGTGTACAGCCCCGGTCGACGTAATCGGGTCTCGATTTGGCGAGCTGAGAAAGCTTTTTCAGGCATATAACCGTAATTTCACCCCCT # Right flank : CACGACTCTCGCAGGAAGGAAGTGCTTTCTACGGTACCGTATAAACCGCACCCGTTCATATACTCAACCGCCGCCGCAGAAAGTATACTCAAAATTGGCATCTAACCTGCATTGTGATAGCATCACAAGACCCGCAACGATTCAATGGGCCTCGGAGTTTGTCATAAATACACGATTGGCTAAAGATTCATGCCTGCACAGAGAGCAGCAGTGGAATCGTAACCGGCCGGAGATGAAGAATCTCAGTGTCTCCGTAGAGATACGCCTACAAGTCCTGTGGCATCAC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGACGGCCAGAAAACCCAGCACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [12,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA //