Array 1 167532-166099 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADAPA010000009.1 Escherichia coli strain UoL_5 9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 167531 29 100.0 32 ............................. CAACTGGCGGAATACAGGACGGGTGGATATTC 167470 29 100.0 32 ............................. TTAGATCACACCTGGATACGAGAACAAATTGA 167409 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCGTGGGGAAAAGC 167348 29 100.0 32 ............................. TGCGCGGAACGGAGATTGTAAATATCAAAATC 167287 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 167226 29 100.0 32 ............................. TTTTCCCCGGCGCTAAACGGGGTAAAAAAATT 167165 29 100.0 32 ............................. CGTGGAGGAGAGGGCGACGCGCTGGCAGACAC 167104 29 100.0 32 ............................. CGTGTCTGCCGCTGCTGAGCTGTGCGGGGATA 167043 29 100.0 32 ............................. GCGCTCTCCTGAACCTCTTTCAGTCCGTCGAT 166982 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 166921 29 100.0 32 ............................. TTGCTAACTGGCGCGAAGAGCGCGCGTGGGCT 166860 29 100.0 32 ............................. ACAGTGAAATATATTGGGATAACATAAAGTCG 166799 29 100.0 32 ............................. GCGCACATATGAAAAAAGCCACGGGTTACGCG 166738 29 100.0 33 ............................. AAACGCGGGATTACGCGCCTGTTTGAAATCTGC 166676 29 100.0 32 ............................. TGATTGTGGAACATCCGTTTGACCTGCTGGCC 166615 29 100.0 32 ............................. GTCTATATTATGATGAAGAGGCAACCATTGAA 166554 29 96.6 32 ............T................ CAATTCATAAATTAATTTACTATTTTGAGTGC 166493 29 100.0 32 ............................. ACGGCGAATATAGCTGTCAACGCGCTCGACAT 166432 29 100.0 32 ............................. TGAGATCAAACGTTAGCCCGGCGGTAATTTGC 166371 29 100.0 32 ............................. GCAATGCTCGTACGCCGTCTCACTCCGCGTGA 166310 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGTCTGGGTGGTAAG 166249 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 166188 29 100.0 32 ............................. TCGGTGGCTGGATTGAAAAAGAAGATAATCTG 166127 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 217643-218891 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADAPA010000005.1 Escherichia coli strain UoL_5 5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 217643 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 217704 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 217765 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 217826 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 217887 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 217948 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 218009 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 218070 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 218131 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 218192 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 218253 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 218314 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 218375 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 218436 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 218497 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 218558 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 218619 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 218680 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 218741 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 218802 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 218863 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //