Array 1 90832-90625 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTET01000005.1 Hafnia alvei strain DSM 30098 contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 90831 28 100.0 32 ............................ CATCAGGCATGATGTAGGGTAACAACGTCATA 90771 28 100.0 32 ............................ CCCAACGCTCACCGATAACAGCGATACATCAT 90711 28 96.4 32 .............T.............. GCTTGGCTCTACTGTCGCCATGTATTGAGCTA 90651 27 89.3 0 ....................-.C.A... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 96.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATAGATTGAGTCATTTTAAACCTCGAGAGTGACTTATTTAATGACTACCACTGAGACGCTAAACTCGGGTGGCAGCTCAGATAGGGTTAGCGTCACTGACACTCTCGAAATCAGTGCTTCTTGCGAAGCCCCTGCCTGAGCCACCATTGTTCGGGTGAGTCTAAGCGCACTGCATTATGGCATAGTGCTGTCGAGAGATGTATTGCGGAACGCTAATCCGACTACGGATTTTTCCGTAGCCAGAAAACTATATGCTTGTGATTTCAGCAATGAAACGGGCTGGATGCATTTACAGTGAGTTACTATTAGATATGGAATCAACTTCTCGGAAATGAGGGGGGTAAAATGCAAAAATTTTATTTTCCAGCCAACCCTTTTTTTTCGCCTACCTATAACTCATTGATTTTATATAAGTGTTTATCTGGAACATAAAAAAGGGTTATGCAGTGAGAAATGAGTTACGGATCTGATTATTCGAAGCTTTATGCGAATATTCTACA # Right flank : ACTAAACGGCATTACTGCATATTTTTCTATTAATACCCACCATCGTAAACGGCTTCTCTTCAAATAAAAGCAAACGCTTTCCTAATTTATAAATCCCCATGAAAACATAATCATGCTAACTATATTTTTCGTGCGATTTTGTGGCGGGTTTTTCATTTTGTTAACAGCATTTTTTACCAAAACACATAGAAACCCTTAAAAACAAAGAAAACATTAAAACTATTAATTATTTAACTATCATCTAATATTCTTTTAAAACAAATGATTAGCTAATTTCTTTGATCGAGATTCAGGGAGTTATTGTATTTCTTATGTAAATTGAAAAATACGACAAAGTAATTAAAATGAAACAAAAATGGTTGTGGTAATAAAGAGAAAAGTATACATATAACCGCAGCAGCAGAACTTCCTCCCATCGTGGTATTTCTGAAGAAAAAATGGGGTAGTGCCAGATTGATCGTTGTTTCGGTCGTTTTTACTTCGGTGTTACCGAAATGTAA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 176378-175630 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTET01000005.1 Hafnia alvei strain DSM 30098 contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 176377 28 100.0 32 ............................ AATATATACAGCACACTGACAGGTCATGAAGG 176317 28 100.0 32 ............................ TTGATGCATGGCCTGTGACCGGAACACTGGAC 176257 28 100.0 32 ............................ ATCATCGAGCCCACACGTTTTGTAGTGTAGAA 176197 28 100.0 32 ............................ CATTTCTCATTGTACCAACCTGTATCGCCCGT 176137 28 100.0 32 ............................ CTTGCTTCGTCGTTTTCCAGACAAGCTCTGAG 176077 28 100.0 32 ............................ ATGAGCGTTCCTCAATGAATACGCTGATTAAC 176017 28 96.4 32 ............A............... CAAATAAACCGCTATCGTGGGCGATAGCTTTT 175957 28 96.4 32 ............A............... ATAAAGGCCGATAAATTACTACGCGGGGCATC 175897 28 96.4 32 ............A............... ATGTACGCCAGACCATTTCACCATTCTGACGA 175837 28 92.9 32 .......A....A............... GATAGCCAGCGGGCTTTCAAAATGACTAAATC 175777 28 96.4 32 ............A............... ACCGCGAAACGAATTCGTAATAGTCATCCCAT 175717 28 92.9 32 ........A...A............... ACTTTGATAACGTCAGGCTCACAAATAAAGAA 175657 28 96.4 0 ............A............... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 97.5 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : GGTAACTTTCACCGGCAAAGTGCGCAACCACAATCTTGGTGATAACGTTAGCGCGTTAACCTTAGAGCACTATCCTGGGATGACGGAAAAAGCGTTAAATGAAATTGTGGCAGAAGCCCGCTCGCGCTGGCCTCTACAGCGTATTTCGCTGATCCACCGCATTGGCGCAATGTATCCCGGAGATGAAATTGTATTCGTTGGAGTGACCAGCGCACATCGCAGCATGGCCTTTGATGCCGCTGAGTTCATTATGGACTACCTCAAAACCCGCGCGCCGTTTTGGAAGCGAGAAGCCACAGAGCAGGGCGACCGCTGGGTCGACGCCCGCGACAGCGACCAACAAGCGGCAAAACGCTGGTAAATCCTTTCAACCCTTTTTTCTGCCCTCACGCTAACTCATTGATTTTTAATCCCACCAATGAGCCGCTAGAAAAAAGGGTTAAATTCCCCAAAATGAGCTACCGATCTGATTAATCGACGCTTTCTGCGAATATCCTACA # Right flank : AATTCAAAGTGTTTGCGTTTGGTATTATTAAAACCGCATAAAATTTAAGCTTTTAAACATGTTATATTCCAAAATTCAGAATTACTGCATCGTTAAGTGTGATTTAAGTTAAATTTCTCTTATGTATTGAGTGATATTTTGACCACGTCGCCAAAACGGAAATAACGATGTGAACAACAATGATTTCTCTCCATCCGACCTGAAAACCATTCTGCATTCCAAACGCTCAAATATTTATTATCTCCAATACTGTCGTGTATTAGTTAACGGCGGTCGGGTTGAATATGTGACGGATGAAGGACGCGAATCTCTGTATTGGAATATTCCCATCGCGAATACCACCGTGGTTATGTTGGGCACCGGCACCTCGGTGACGCAGGCCGCAATGCGAGAATTTGCCCGTGCGGGCGTATTGGTCGGTTTTTGTGGCGGAGGCGGAACGCCGTTGTTTGCGGCGCACGAGGTAGAGGTGGATGTCTCGTGGTTAGCCCCGCAAAGCG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 180706-180257 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTET01000005.1 Hafnia alvei strain DSM 30098 contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 180705 28 100.0 33 ............................ ACAAATGGCTGCAGCGGGCAGCGTCGGCATGAA 180644 28 100.0 32 ............................ AATTAACGTGCTGCGCCGTCAGCGCATCCCCG 180584 28 100.0 32 ............................ TTTGTGAATTGTGATACATGTCACTTGCAATC 180524 28 100.0 32 ............................ GATAGAGTGTGAGCGTCTGCAGGGGTTTCCTG 180464 28 100.0 32 ............................ AACAGCGTGGCCATCGATTCCATAACTGCATG 180404 28 92.9 32 ............G.....T......... TAACGGGTTATATATCTACGATTCACATTTAT 180344 28 100.0 32 ............................ CGAAGGCGGTTGTTATTGCAACTTCTGAGCAA 180284 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGCGTGATTAAAGCAATTAATTGTGAAAGCCCCGAGCGGTCGTTGGGCTGCTCAGGGCTGATGTATTGTAGATAATCGCAAATTAACCATGCGTAGCAGATCTAATGCTTTTAACATCAGATTTCCAAGGTTATGGCCAGCTAACTCACCGTTACCGTTAAAACGATATTCAAACATGGCAGAAGCCCGTTTGCGTTGGGGTGACTAGCGCACATCGCAGCATGGCCTTCGATGCCGCCGAGTTCATTATGGACTACCTCAAAACCCGCGCGCCATTCTGGAAACGAGAAGATGCAGAGCAGGGCGAACGCTGGGTCGATGCCCACAACAGCGACCACCAAGCGGCAAAGCGTTAGTAACCTCTTCTAACCCTTTTTTTTTGCCTCCATGCTAACTCATTGATTTTTAGTCCCTCTAATGAGCCGTAAGAAAAAAGGGTTAAATTCCCCAAAATGAGCCACCGATCTGATTAATAAAACCTTTCCGCGAATATCCTACA # Right flank : GCTGTTGAAATTAATGTTGAGCCTTATGTTCGTTGGGCTAAGGTTTGTGCTATCAGCTACTTGGTTGAAAATACGTGGATTGACGGTGATTTAGAGGCTTTTGACGTAAGAGATCACAACGAATTCATTGATAAAGAGCTTATTAGCCGCTTATCACGTGGTGTAGTAACAAGTATCAGAGTTTTATAATACTTTTTAGGGCTCTCTGCTGGGAGCCCCTTGAAACTCATGATGTTCTAGCTCAACTGCTGCAATGCCTTCTCAATGGCCATGCGCAGCAGATCGCGGTCGTGGCGGTAGGGAATATCGCTGGCTTCCAGCGTTTCCTGCACCACCACGCGGTTTTCCATTCCTTGGATGTTGACCTTTGGTCCCACGACAACGCCGTCGATAGCATGCCCACCGATGGCTTCTTCCATGATGCGCAGTTTATCGGGTAGGGTTAATGCCGCAGCCGCGACGCTCAGCTCTTTTCCTAGATTACCGATGTAAATCATATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //