Array 1 923939-922332 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033196.1 Xanthomonas oryzae pv. oryzae strain AUST2013 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 923938 31 100.0 34 ............................... GCGCAAAACGATAGCGCCAAGGTCGAAATCCCGG 923873 31 100.0 35 ............................... GCTGCTCGCCGAAAGCAAGCGTCGCTAATAGGAAC 923807 31 100.0 34 ............................... GTTCGTACGCGCCACGGCGTTCGGAACAAACTCT 923742 31 100.0 35 ............................... TTCGGCTAATGGTGGTGAGGGCAGGGCGGCGCTTC 923676 31 100.0 35 ............................... GAGGCGCAATTCGACAATGGGCGTATGCAGGACTG 923610 31 100.0 35 ............................... GACAACTCCACCACGATCACTGGACAAGCCGGCCG 923544 31 100.0 34 ............................... GCGCTTGCCCAAGCCTGACATTTCGCACAACTCC 923479 31 100.0 34 ............................... CACGCGCTATAGCGGCCGTAGTTGCTACGTCCGG 923414 31 100.0 35 ............................... GTGCACTACTTCACCAAAGATCGCGCCGACCCCAA 923348 31 100.0 34 ............................... CTGGCGCAGCACGCACGGTGGACAAGAGGTGGGC 923283 31 100.0 36 ............................... TCTTGCCCGTAGTGGCGGTCTGGAAGGTGCTCTAAG 923216 31 100.0 35 ............................... ATTTCATGAGCGCGCATGCGCAGATCAGCAAGCAA 923150 31 100.0 35 ............................... TTGAGATAAGCGGCGATCTGGTCGGCCGTGTAACC 923084 31 100.0 35 ............................... TAGATCGCCCACAAAGGACCGTGGATATGTGGACA 923018 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 922952 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 922886 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 922822 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 922755 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 922690 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 922624 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 922559 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 922492 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 922427 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCAGCGCAGGCTGGCC 922362 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 25 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : TGCTGCACGGCAAGGAAGACAGCGTGTTCGGCGACAGCGGCTACACCGGTGCGGAAAAACGCGACGAGTTGCAGAGCTGCGAGGCTGCATTTTTCATTGCCGCCAAGCGCTCCACGATTCAAGCCATTGGCAACAAGCGCGCGCGTGCTTGGGCAGAACGTTGGGAACACTTCAAGGCAAGCGTGCGCGCGAAGGTGGAGCACCCATTCCGGGTGATCAAGCGGCAGTTCGGCTACACCAAGGTGCGCTATCGCGGCCTGGCCAAGAACACCGCACAGGTGCAGACGTTATTTGCGCTGTCGAATCTGTGGATGGTGCGCCGGCACTTGCTGCCGGCCAGGGGATAATGCTGCCTGGCGGCAGCCAAAACCGCCAGAACGTTGCAAAAATCGCACCCGACTCAGCATTTTTCCAGTCATTGAAATGCAAGAAGCTGGAATTTTAGAGGTTTGATGGGTTGTTCAGACCTTCCTTAGTGCACCTGGTCCTCGGCAACGCTC # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 928315-925133 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033196.1 Xanthomonas oryzae pv. oryzae strain AUST2013 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 928314 31 100.0 35 ............................... TTTGATCGTGTCAGATAAGTGCGCATTCAGTCTCT 928248 31 100.0 34 ............................... TCCTCTCGCAACTTGGCATTAGCCTCCTTAGCGC 928183 31 100.0 34 ............................... CTGATCAGTTTGAGGATGTCAGTCGTATTATATT 928118 31 100.0 34 ............................... ATTGAATGCTCCTCGCAATGGAGGTGTGGCCCGT 928053 31 100.0 36 ............................... TCACAAGTGGAAGCTGAGAGATGAAGTCTCTGGCAC 927986 31 100.0 36 ............................... TTGCCAAGTGCCCTCACAATGGTCAGAGTTTGATCG 927919 31 100.0 34 ............................... CTGCACTCTTTGTCTTCTGAGAGTCATTAAACTT 927854 31 100.0 36 ............................... CACACTGTACTGGCGGGACTGCAATAGCTGTGCATC 927787 31 100.0 35 ............................... TCTCAGCGCCTATTGCCATAGGTGTGGTGCATATG 927721 31 100.0 35 ............................... AATTGTCATTGCACGGCCGTCATCAAGCCAGGCCT 927655 31 100.0 34 ............................... TCGCTCTGGTCGTTGATGGCTTCAAGCCGCCCAT 927590 31 100.0 34 ............................... GTGCACTTGCGCGAGTTTGATCGATTTGAGTCTC 927525 31 100.0 34 ............................... AATTTCTGGCAACACGTTAACGGCGACAGACGGT 927460 31 100.0 34 ............................... TGAAGATCGTGGCTGCCGACGAGAATACCGTTAC 927395 31 100.0 35 ............................... AGACCATAATTAAGCTTCAGCGTGATTCGGTGAGG 927329 31 100.0 35 ............................... ATGAAGATTGCAGAGTACCCAGAAGAGGTGAATGC 927263 31 100.0 36 ............................... CTCTGCGCGGAAACGGGACAGGGGGTGCGGGCGCAG 927196 31 100.0 34 ............................... TCGAGCCCTTGTGTTTCGGAGGATACGTTTTTCC 927131 31 100.0 34 ............................... CTCTTGATGAAGCTGCTGACCTCAGCTGCAAACT 927066 31 100.0 33 ............................... TTTCCTCTGGTCAGATACGTGCGCATTAGTCTC 927002 31 100.0 33 ............................... GCGTTTGGATTGCGATACCACGCGCGTCGACGA 926938 31 100.0 34 ............................... GGACACCTCGTCGAGCAGCGCTTTGATCGCCCGC 926873 31 100.0 35 ............................... CTGCAATCAGATATGGTGCCCAAATCTTTGGGACT 926807 31 100.0 34 ............................... CTATTGCCGGCAGCCGCCTATGCAGGCGGTACCG 926742 31 100.0 34 ............................... TTTGCAAATGAATCATATTGATCATCAGTCAGGA 926677 31 100.0 34 ............................... GTGTCCCACTGCGCCGACCACTTCGCGCCGCCGC 926612 31 100.0 36 ............................... CGCCGCGTTCGCGCCGCAGACCGTAAGCAGTTGGCG 926545 31 100.0 35 ............................... TATTCCGCCCGACCAATCGATCCGGAGGTTCGGAA 926479 31 100.0 35 ............................... TTGGCCTACCAGGCTGCGGCGAAGTGGCCGCTGAG 926413 31 100.0 36 ............................... CAGAGCCTACGGGGCTGGGGCAGCATCAATTGCAGC 926346 31 100.0 33 ............................... TGCTGTCAGATCCGCAGTTACTGTATAGACCTG 926282 31 100.0 35 ............................... CGTCAGCATCTGTGACAGTAGCAATGACATCCCAG 926216 31 100.0 34 ............................... CCTCACCCCGCCGGATGCACGTCTGACCGTCCGT 926151 31 100.0 35 ............................... CTCTGGGAGACGGCGGATATGGAGATGTGGGAAAG 926085 31 100.0 34 ............................... GCCAAGAAGACGGACACCACGCACGTTATCGCGC 926020 31 100.0 35 ............................... TTGTGGGACACGGCAGATATGGAGATGTGGGAAAG 925954 31 100.0 34 ............................... AGAACATGAGTGTCCAAACGCCTGACGCGCAGAC 925889 31 100.0 34 ............................... GCTACCACCTGAACGGCGCTCGCCGCCGCCGACC 925824 31 100.0 34 ............................... CCCTTGGTGCCTATTGTGCCTAAATCTAGGCACA 925759 31 100.0 36 ............................... CACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTC 925692 31 100.0 35 ............................... GGCACGGGGACATCGGCGGTGCCGTCAGACGCTAG 925626 31 100.0 36 ............................... AACGCGTTGTAAGCCTCGTGCCCGTGCTGCGTGATG 925559 31 100.0 35 ............................... CGGCAATCGACGGCGATCTAGGCCCCGACGATTTA 925493 31 100.0 36 ............................... TTGACGGTGACGGTGTACGCGCCACCGGTGTTATTG 925426 31 100.0 37 ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA 925358 31 100.0 34 ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG 925293 31 100.0 34 ............................... TGGCTCCGTTGGGTGGTTGGTAAAGCCATCGGAG 925228 31 100.0 34 ............................... CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC 925163 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 49 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CAATGGTTAGGGAACCTCTGAACAACGCACCACAAATGCGAGACACTATTTGTTCGGAATGAGGAGGCATCCATGCAACTGACGTTCGGTGACGCCGAGGGCCTGGGCAAGCGCAAGCAGACCCGGCGCGAGATCTTCCTTGCGGAGATGGAGCGCATCGTGCCGTGGAAGCGACTGCTTGCCCTGATCGAGCCGCACTATCCGGTGTCAGGACGACCGGGTCGGCAGCCGTACGCGCTGGCGACGATGTTGCGGATTCATCTGTTGCAGCAGTGGTATGCGTTGAGCGATCCGGCGATGGAAGAGGCATTGCACGAGATCCCGACCCTGCGGCGTTTTGCCCAGCTCGGCGGCTTGGATAACGTTCCAGACGAGACCACGATTCTCAACTTTCGCCGTTTGCTGGAAACCCACGCCATTGCCGCTCGGATGCTGGAAGCGGTCAACGCCCATTTGTCGCGCAAGGGGCAGAGCCTGCGGTCGGGCACGATCGTCGATGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //