Array 1 14437-14764 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKFE01000037.1 Hafnia alvei strain B16-3 OCMNIOIJ_43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 14437 28 100.0 32 ............................ AAGCCGGAACCGTTCGACGCAAAGACGCTTAC 14497 28 100.0 32 ............................ GTACGGTCATCAGATTTATGCTAATGCTTTAA 14557 28 100.0 32 ............................ CTGTAACCGTTTTTGTGTCGTCGTCTATCGTG 14617 28 100.0 32 ............................ ATCAGTGCTTGACGGTCAGCCACAATTTTTCC 14677 28 100.0 32 ............................ TGACGCCACCGCCGCACGTGTGACCGTCAGCC 14737 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATTGAGTCATTTTAAACCTCGAGAGTGACTTAATTAATGACTACCACTGAGACGCTAAACTCGGGTGGCAGCTCAGATAGGGTTAGCGTCACCGACACTCTCGAAATCAGTGCTTCTTGCGAAGCCCCTGCCTGAGCCACCATATTAGGGTGAATCTAAGCGCACTCCATTATTATGGCAAAGTGCTGTCGAGAGATGTATTGCGGAACGCTAATTCCGACTACGGATTTTTCCGTAGCCAGAAAACTATATGCTTGTGATTTCAACAATGAAACGGGCTGGATGCATTTACAGTGAGTTACTGTTAGATATGGAATCAACTTCTCGAAAATTGGGGGGTAAAATGCAAAAAAATCTATTTTTCAGCCAACCCTTTTTTTTCACCTTCCTATAACTCATTGATTTTATATAAGTGTTCATAGGGAAAATAAAAAAAGGTTATGCAGTAAAAAATGAGTTACGGATCTGATTATTCGAAGCTTTATGCGAATATTCTACA # Right flank : AAGTGCTAGAGCCGTTGCCAAAGCTATCGAGGCAGGCTGGATTTAGGGAGGCGAATGGTCAGCGGGAACCTAGTGATGTCGCAGTCATCGAGCTAATACCAGAACATCCACATGGGCATTATTGATTATGAATAATTCATTGATATTACTATTTTTTATTTCTTCTTTTTCTTTTGCTTCAAGCGATATTAACAACGCCACAAAGGTGGCTCTAGAATTCAACCAATGGTATCTGCAACAGATTGAAAAAGATGTCTATCCGCTGCTGGGGAGTGGTAGTCCAGAAATGAATGAATACGTAACCGCTGAGACGTTGAGAAAGCTGCACAAGGCAGTGAATAGCGATGATGAACTCTATGATGCCGACTTTTTTACTCGCTCACAGGACATTGGGACTGACTGGCCGAAAAATGTCACCGTGGTTTCTTCCGATCTCGATCCGGTTTGCCTGAATGTTTATGTTGCTTATGGGAAAGATATGTCTCACACGATCATTGACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 63345-62717 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKFE01000003.1 Hafnia alvei strain B16-3 OCMNIOIJ_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 63344 28 100.0 32 ............................ CATGTCTCACGAACCCACACGAGGTCGCCAAC 63284 28 100.0 32 ............................ GTGAACGGAACGGATTATTCAACGATTTATGA 63224 28 100.0 32 ............................ CGAACCAGTGCCTCGGCAATGTGGAACAACGC 63164 28 100.0 32 ............................ TTTGTCGTCAATTTCCAACGACTGCATTGCTA 63104 28 100.0 32 ............................ TCACGGAAATAATATGCTTGATTTTCTAGATG 63044 28 100.0 33 ............................ GTTACCACAACCACTCACGACAAATAGCGCCGG 62983 28 100.0 32 ............................ AAATCGGCGTAATACAAGGCGTGAAGTTTGAT 62923 28 100.0 32 ............................ TGGTATCTGGCTAGTGTTGCAGTAAATGAACA 62863 28 100.0 32 ............................ TGTAACGATTCGAATGGTCACAGCAGCACAAG 62803 28 100.0 32 ............................ TGAACACTGATTTGCGTCAGCGCTTTAAATGC 62743 27 85.7 0 ..........C..........C-.C... | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTGACATTCACCGGCAAAGTACGCAACCACAATCTTGGCGATAACGTCAGCGCGTTAACGTTAGAGCACTATCCTGGGATGACGGAAAAAGCGTTAAATGAAATTGTGGCTGAAGCCCGTTCGCGTTGGCCTCTACAGCGTATTTCGCTGATCCATCGGATTGGCGCAATGTATCCCGGCGATGAAATTGTTTTCGTTGGGGTGACCAGCGCACATCGCAGCATGGCCTTCGATGCCGCCGAGTTCATTATGGATTACCTCAAAACCCGCGCACCGTTCTGGAAGCGAGAAGCAACAGAGCAGGGCGATCGCTGGGTTGATGCCCGCGACAGCGACCACCAAGCGGCAAAACGCTGGTAAACCCTCCCAACCCTTTTTTCTGACTCCATGCTAACTCATTGATTTTTAATTCCTCCAATGAGCAGCCAGAAAAAAGGGTTAAATTCCCCAAAATGAGCTACCGATCTGATTAATCGAACCTTTCTGCGAATATCCTACA # Right flank : TTAGCTTCTGCTTTATTTTCACTATACTTATTTCAGCGCTGCACCTTTGTGGCAGTATTTGAGGTAACTTTCGTAGAGGTAAGGGGCTAATTTGATTTGGTTTGAGCAAGGTCTTTATTTGCGGGTTGAGGAGTTGGAGAATGGGCCACGGCCTTTGCCGCTGCGTAGCGGGTTTAGTCGTGAAATAGCCTATCGGGCGTTAGGCGTGTTTAATCCCTCAGAATCATCGGATGCTTACTACATATTATCTAACGATCGGGATGAAATATGGTTTATCTGTAATCGACACCTACGGACGGTTGCGCTTTTACCTGATACCACTGATTTTAGGCGTCCGATTACCGATTAATCATGGCCGTGGCTGTAATTTTATCTGTTTTAATTGGGATATAACTTTTTGTTAAGAACTTTAACGATACAAAAACTGCTCATTGTCACCTTGTACCCGAGTTATTTTCCAACCGTCCTGCCAGACGAGCCAGAGAATGAGGTGTTGCTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //