Array 1 161195-158607 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBAD01000038.1 Klebsiella pneumoniae strain C1685 C1685_S6_L001_R1_001_contig_38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 161194 29 100.0 32 ............................. CTGCTGACGACGTGGATCCGCTGGAACGTCAC 161133 29 100.0 32 ............................. TACTGGCAACGGAATTCGGTTCGACGTTTATG 161072 29 100.0 32 ............................. CGCTCCCCAGGACAAACGCGGTCTCCGGATCC 161011 29 100.0 32 ............................. TTGCACGCACGTGAATAGTCCAGGCCGCCTGG 160950 29 100.0 32 ............................. TCCAGCGTGTGCATCTCGCCGATCTCTTTTTG 160889 29 100.0 32 ............................. TAGGGTATCCCGTTCTCATCCACGGCAATATG 160828 29 96.6 32 ............................T TGAACTGATCAAGGGGCGGCTTCAGGCAATTG 160767 29 100.0 32 ............................. AGTAACGAAACGGTCGCACTCAACCGCGCCGC 160706 29 100.0 32 ............................. TCTTGTTAGTGATTGAGTAGCCCATCTGGGAC 160645 29 100.0 32 ............................. CTACCCGTAAAAAAACCGCTGCCGCTGTCGCC 160584 29 100.0 32 ............................. CTCTTAATGGAATTCGTGAAGACGCTGGCCTT 160523 29 100.0 32 ............................. ATCTGGCGAGATTTTACGGGAAATAATATCCC 160462 29 100.0 32 ............................. GTTTTGACCGAGTATATCTGGCGGGATACCCC 160401 29 100.0 32 ............................. GTCCTGGCTGACCCGGACGAATTTGTTGTGAT 160340 29 100.0 32 ............................. GCGGTTTGCTATCAGATGAGCCTGTCATCAAA 160279 29 96.6 32 ............................T GCTGCACGATGTGATTGAGAGATGCCGGGAAG 160218 29 100.0 32 ............................. GGTTTATAGAGGCTGAGGTATTCACAATGCGC 160157 29 100.0 32 ............................. GGCCTGAACCAGAGCACGATCTACACCTGGAA 160096 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 160035 29 100.0 32 ............................. GTTGCGAAGCCTACGTCCAGATCGTAGAGATA 159974 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 159913 29 100.0 32 ............................. AGCTGCGTGACGTTGAAAAAGATGGCTGCGGG 159852 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 159791 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 159730 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 159669 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 159608 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 159547 29 100.0 32 ............................. TCTTCGAGTTCAGGCCGGTATCCCACTCGCTC 159486 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 159425 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 159364 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 159303 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 159242 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 159181 29 100.0 32 ............................. TACAGGACGCACTGGCTGCGAAGCCGTTCGCG 159120 29 100.0 32 ............................. TCGCTCTGTGTCATACGGTTATTAGCCCTGGA 159059 29 100.0 32 ............................. AATTTGCTCATAGAATTGAGACAGTAAACTTT 158998 29 100.0 32 ............................. CCGAAATGGATACCGCCGCGATTGAGTATTCG 158937 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 158876 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 158815 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 158754 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 158693 29 100.0 29 ............................. GGGGTCACTTGGGTGAAACTGAACTAACT 158635 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 43 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCTTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCAACACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATATAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7348-6349 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBAD01000068.1 Klebsiella pneumoniae strain C1685 C1685_S6_L001_R1_001_contig_68, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7347 29 100.0 32 ............................. ATCAGCCTGCGGGGTTCGGAGCTGCGTGTCTC 7286 29 100.0 32 ............................. GAAACTATTTCGGAGCATCTCATTGCTGAGGG 7225 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 7164 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 7103 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 7042 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAAAACCACCGAGGCAGGG 6981 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 6920 29 93.1 25 ............CA............... AACATCAGTGGAAATCCACTGCGGC Deletion [6867] 6866 29 89.7 32 ......T.....CA............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 6805 29 100.0 32 ............................. TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 6744 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [6739] 6682 29 86.2 32 ............CT.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT CC [6675] 6619 29 93.1 32 ............CA............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 6558 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 6498 29 86.2 32 ...C........CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 6437 29 93.1 32 ............CT............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 6376 28 79.3 0 ........T.A.CA.........-....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 93.5 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGAAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAC # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [29-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //