Array 1 610799-614731 **** Predicted by CRISPRDetect 2.4 *** >NC_007955.1 Methanococcoides burtonii DSM 6242, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 610799 29 100.0 32 ............................. ACTGGCTATCTACACCTGAAAAAGATAAAGGT 610860 29 100.0 32 ............................. ACTCGTCATCGAACGGGTTTCGGAGTAAATAT 610921 29 100.0 32 ............................. GTCGTGTGGACATTGTATGCAAGACTCCATTT 610982 29 100.0 32 ............................. TACTAAGTGCAATATTGCTGATGTTATTCTGT 611043 29 100.0 32 ............................. TTTCCTCCGGCATTGATGTCACCGATAGTAGT 611104 29 100.0 32 ............................. ACTGTACATCATTGTATTCGAATGAGCACCAC 611165 29 100.0 32 ............................. ACATTGGATACTAAGAGGAAACTCGCAGAATA 611226 29 100.0 32 ............................. GGACACTTACTCCGAAACCCGTTTGATGATGG 611287 29 100.0 32 ............................. AATACCCTCGCATGTCTGCAACATAAACGAAT 611348 29 100.0 32 ............................. GGACAGTTGTATTGAGTTCTCTCCGTAGGGGT 611409 29 100.0 32 ............................. GTCTCCAGTGGTGCTATTGTATCACATAGGCA 611470 29 100.0 32 ............................. ACACTAAGTTTTTCAGGTCCTCTAGTGTATGA 611531 29 100.0 32 ............................. GCGGGCGCACAGGGCGTAATCATCGGAAACAT 611592 29 100.0 32 ............................. CTTCTTTCATCTTAACATATTTCGGCCAAACA 611653 29 100.0 32 ............................. CAGGAATGGACCCTCAATATATCAAATGGTTA 611714 29 100.0 32 ............................. CATTAGATAACCTCCTGGATCTCATGCTCTAA 611775 29 100.0 32 ............................. TAGTGAGAGAGATCACTATAAACAAAGCAGCA 611836 29 100.0 32 ............................. GCCCCCAAAGTATAAACGTTCAGTTTCTAAGT 611897 29 100.0 32 ............................. ATAATGGGGTGATTGAAGTAAACGAGACCGAA 611958 29 100.0 32 ............................. GTTATCATTAACATTCTGTTTCGATCCCGGAC 612019 29 100.0 32 ............................. TGACCCAATCAGTGCAAAATGCCAACGGTCAG 612080 29 100.0 32 ............................. CTTAATAAATCTAATTGCCTTACCGCATCCAT 612141 29 100.0 32 ............................. ACCCCTTCATTAAAAATGGATCAACTTTTTAA 612202 29 100.0 32 ............................. TCTATGAGAATTGGCAGCGATATTTTGATAGG 612263 29 100.0 32 ............................. GTTATTCCGGTTGTTCGTTTTGTCCCTGCTTT 612324 29 100.0 32 ............................. TTGTATCAGGCATTGATAGCGTGGATAGTTCT 612385 29 100.0 32 ............................. CCACTTATTGAAGCTGGAGCTTCAAAGGTCGT 612446 29 100.0 32 ............................. TAATCTCCGCGATTACGTTACCATCACGCAGC 612507 29 100.0 32 ............................. AAACCATTCGGCAGGAGCTATTAAAGCACACG 612568 29 100.0 32 ............................. TGACGCATTAGAATAGCTCACAGTATACCGAT 612629 29 100.0 32 ............................. AATACAATCCATGCATCTTTATTTGAGGCATT 612690 29 100.0 32 ............................. ATACGGTCCTTATCGGGGGTCCCCTTGCGTAT 612751 29 100.0 32 ............................. CCAATCGTCTATTGTTCCTTGTTGTGTTTGTC 612812 29 100.0 32 ............................. GTAGCAGTAATAAAAAAATCAGAACATCTGTC 612873 29 100.0 32 ............................. GCCTTTTCAGCTCTCTTTGATATAAGAGCTGT 612934 29 100.0 32 ............................. TAAGAACCGCCAACTGGGTACATATATCCATC 612995 29 100.0 32 ............................. TACACATCATTCTCACTGTCGTACACCGTCAC 613056 29 100.0 32 ............................. TTAAACAAGATTCTCCTGATAATATGTCCTTG 613117 29 100.0 32 ............................. TCGATGTATATAATGCAGCGCGCCAACGAATG 613178 29 100.0 32 ............................. ACTATTCGTTTTCTGACTGGGCGTTTATAAAA 613239 29 100.0 32 ............................. ACAATTATCAAATACAATACGGGAATACACTT 613300 29 100.0 32 ............................. TATTGATTTCTTCTCCAGCATCGCTCATAACA 613361 29 100.0 32 ............................. TTAAAATTGTGTCAGTGTTGTTATTCAGTATT 613422 29 100.0 32 ............................. CTTTATTACAACGTCACCTTGAGATGAATTAG 613483 29 100.0 32 ............................. GTGAAGAACCATGAACTATCACGACCATTTAT 613544 29 100.0 32 ............................. CTTAGTTTGTCACGGAATAGCTGAGGAATGAT 613605 29 100.0 32 ............................. CCCCCGAAATATCTACCCAGCCAGTATTTATT 613666 29 100.0 32 ............................. ATAGAGAAGTGTTAAAACCTTCAGACAGTAAA 613727 29 100.0 32 ............................. TTTGTGAAAGATATTCCGGTAACAAACAAGAC 613788 29 100.0 32 ............................. GGAACCGTTTTCAACATCCGAATTCTTTCATT 613849 29 100.0 32 ............................. CCAAACTCTATACATCTTGAACCTACGCAGGA 613910 29 100.0 32 ............................. ACAGATGAACAGCATCGTATCTGGTGGCACAA 613971 29 100.0 32 ............................. TAAAAATCACGAAAACTATCGCACTGTATCGG 614032 29 100.0 32 ............................. GGAGAACGAGGTGACGGAAAGAATCGGCACTA 614093 29 100.0 32 ............................. ATCCTGTTTTAGGTCCTTGAGAGGAAGGTTCT 614154 29 100.0 32 ............................. CTGTAAAAGCTGACCCTCGGCATGTCCGGGTA 614215 29 100.0 32 ............................. TCATCTTCTGCTTCGACGATAGTTTCAGCGGG 614276 29 100.0 32 ............................. ATATCAGCGATATCAAGTATGACGGTGGTGCT 614337 29 100.0 32 ............................. TCGATATAAACACATACGCCCGGACTCAATCG 614398 29 100.0 32 ............................. ACCCTGACCTTCTCTGAGATCAAATGGGCCAA 614459 29 100.0 32 ............................. GTAATTGTTCATTGTTGGCTACAAATACTGTT 614520 29 100.0 32 ............................. GTATTGGTGATTATCTTGATTTGGGTAATCAT 614581 29 100.0 32 ............................. AAAGCAAACACGAGGAGCTCACCAAATCAAAA 614642 29 100.0 32 ............................. CCAACACACATCACACTTTAAGAACCAACACC 614703 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 65 29 100.0 32 GAGTTCCCCATGCATGTGGGGATAAACCG # Left flank : GAAAAGGATCATTCCAAGTATTGAGGAGATGCTTTCAGCGGGTGGTATTGATCTACCTTCTGCAGCAAAGGATACTCTCCCTCCTGCTATCCCTAATGAAAGAGGTATTGGCGATGTTGGTCATCGTGCTTGAGAACGCACCTGCCAGATTACGTGGTCGACTTGCTGTCTGGCTTCTGGAGGTACGCGCAGGTGTTTATGTGGGGGATTATTCGGTAAAGGTCAGAGAAATGATTCTGGAGAATCTTGAAAAAGGTTTGGAAGATGGAAATGCAGTTGTAGCGTGGAGTTGTCCAAACGAACAAGGGTATGATTTTTTAACATTTGGTGAGAATAGACGCATTCCAAAGGAGATGGATGGGGTTAAGTTAATATCTTTCTTACCAGATATATGAATCCAGTCTTCAATGCACCAATCGTTCATCAGGATAATTGCAATATGTTTTTAGTCTTTGGATGCCGGTAAGTGATTGGTGTATTGTTTCCATATATATGGAACA # Right flank : GAACTTCATTGAGCGCGTCTATGCGCCCATGAAGATTTCCGGCGGTAAAGTGGTGAGACAGAAAGAAACTGTGATGGAAATTGGATACTATGCTGAGATAATTGATACTGAAGACAACCTTATAGGCCTGTGGGGAAAACTTCCATATGAACTGAAATTTGATATATCATTCAGCTTGAATGCCCTGCAGAGTACCTTATGGTATTAGATAACTATATCATATTATGTTAATAGGCAGGAGAAGCCTGCTACATTTTTCAATTTGCTGTTTAATTATCACAAATATTAGTAAAGCTTGACTATATATCGATAAGTACTATCCAAAACACCATGTATTGATATTGTCTAAATTTCGATTGGGTTGTTTTTAGAAATAGACCTATGGAATTTGAACATAATTATACTTGGTGATCATTTTGGAAACTTATACAATAATAGCCCTGATATTTGTGCTACTTGGTTATATCTACACTTCATTCTGTTTACAGAAAATTGCGATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCATGCATGTGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCGAGTGGGGATAAACCG with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.20,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1212627-1213991 **** Predicted by CRISPRDetect 2.4 *** >NC_007955.1 Methanococcoides burtonii DSM 6242, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================================== ================== 1212627 30 100.0 36 .............................. GTAGCAATTGTAACGAGGTGCGATATGGGAATACAA 1212693 30 100.0 35 .............................. TACGATGCCGAAATACATGTGAGGTTAGGGTCATG 1212758 30 100.0 37 .............................. CGCGCTAACAATAGCAGAACTTGCAGCACACAGTCAC 1212825 30 100.0 36 .............................. ATTGACGGGAATCAGGTAGCTGTCGCTACATCCAAA 1212891 30 100.0 36 .............................. ACGCTGACGTAATCCGTGTCAAGGGGTGGACAAAAT 1212957 30 100.0 36 .............................. AACTGTCAAACCAAGGTAGCAAAGATAAGCATCTTG 1213023 30 100.0 35 .............................. GTGGAAATATGGGTATAATGTATATTTGATGAGTG 1213088 30 100.0 36 .............................. GCAGTTCTTCGATCTGTTCCCACCGAGCCTTCCTAG 1213154 30 100.0 37 .............................. GATTGTGCCCACAGTTCAATGGTATCACCATCTCCAA 1213221 30 100.0 36 .............................. TGTGGTGATGTTCATTGTAGTGAATGTCCTTTTCGA 1213287 30 100.0 36 .............................. ATAGCATGAACACCTCTTTTAGAAATTGGGATGGTG 1213353 30 100.0 36 .............................. TCACAACTTCGCTTCTGGGTGCGCTGGTGGCTAAAT 1213419 30 100.0 36 .............................. TCACACGTTCCCATAACAGAAATGCACAACACGCAA 1213485 30 100.0 36 .............................. GCTTCCACTGGACATGATTAATCATGATAGATTATA 1213551 30 100.0 36 .............................. AATGTATTGGCAGGTTCGGACATCTCAAGTGGGACT 1213617 30 100.0 35 .............................. GACGATGCAATCTATCGGGTCAGAGCTACCTCCAA 1213682 30 100.0 36 .............................. AGATTATAAAACTTTGGAATTGGATTTGAGATAATA 1213748 30 100.0 36 .............................. TATGTTGCTTCTCCGCTTTTAGCCCACAGTTCAATG 1213814 30 100.0 53 .............................. GGGATTCTCAATCGTCCACTAACATCCAACCAAGGACAGACGATGCAGTTGGC 1213897 30 100.0 35 .............................. ATGTTTGTTGACCCCGACGGCGCATTGGGCCATAT 1213962 30 93.3 0 .........................A...T | ========== ====== ====== ====== ============================== ===================================================== ================== 21 30 99.7 37 GTTAAAATCAGACCTTAGAGGGATTGAAAC # Left flank : GATTGAAGACGAAGAATATGTTCCTCTTGTGATGTGGTGGTAATATGTATGTGATAATTGTCTACGATGTTGGTGTGGAACGATTGAACAAAGTACGTATCTTCTTGAAGCAATATCTTAATTGGGTTCAAAATAGTGTTTTGGAAGGGGAACTTACAAAAGCGGAGTATTTTAAAATACAATCTCATTTAAAACAACTCATAAATAAAGACGAAGATAGCATTTTTATTTATCGGGTAAAAGATTATAAGTATCTTGAATTTGATGAATTAGGAACCAGACCCATTGAAATCGATACAATTATCTAATTTTTCGTGGATCTTTATATAGTCTCTTCTAAATGAGACATCCACAAATACAAGTCTTTATTTTATGGTTATAATGAGTTGTTTTTTATAGTATAATACCTGACTATAATTAAGAATAATCGCAATCAAGAATTGTATTTATGATTTTTTAAAATCAGATGTATGTTCTTAATATGTGGATATTTTTGCTTG # Right flank : TATCATTGTACTTTAACATTATTTTATATTCTACGCAGTTCTAAATTGAAATTGGAGAAATTGAAATATATATTGAGCCACCTATTACCCCTAAGAACACGATTATCGAGAGAACAAACATGGAATCCCTCAAAAAAAGCATTCTGGAAAAGATAAAGCCAACTGAAAAGGAAAGGGAACACCTGACCAAAGTGGCCGATGAGCTGATGTACAAGATAGATTGCCTTACATTCAAGGTCGGTCTGGTAGGTGTAAAAACACAGCTTGTAGGCTCCGCTGCAAGAGGTACCTGGATATCCGGCACACATGACCTTGACATATTCATCACATTTCCGGATGATACCAGCCGTGAAGACCTTGAAAGCTATGGTCTGTCAGTTGGCAGACAGGTGGCAAAGGAGGCGGAACATTGGGATGAACATTATGCTGAACATCCATACGTGAAGATGCGATACAAGGGTTTCGATGTGGATCTGGTCCCTTGTTATAGCGTTTCCAGT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCTTAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //