Array 1 674937-671701 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGGZ01000001.1 Gallibacterium anatis strain NCTC11413, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 674936 32 100.0 35 ................................ ACAAGCGGACATTCTCAAACCGTTATTTTTAAAAT 674869 32 100.0 33 ................................ CTCTTTCATTTTATCGATAACGGATTGTAAATG 674804 32 100.0 36 ................................ GTGCTAATAGCCGTTGTTCAGATACGGCTACAATTC 674736 32 100.0 34 ................................ ATCGATAGATCGCCCTGCATTACTCTATCAACGA 674670 32 100.0 36 ................................ ACTAAGGCGTATCGTTGTTGATACAGCTCATAGCCA 674602 32 100.0 34 ................................ TGATTTTGTCACTGACATAATATTTTTATTCTTC 674536 32 100.0 35 ................................ CGGCAAAAGGCGCAGCAATTACAACATTATCTAAT 674469 32 100.0 34 ................................ TTAGCCTCATTATCCTGCCGGCTTAAAACTTGCC 674403 32 100.0 34 ................................ CCTAATGCCTACTTAACCGCCATTTTAGGAGAAA 674337 32 100.0 33 ................................ CCTACTAGAGGGTCTTTTATTCGGCTCTCTCGC 674272 32 100.0 34 ................................ ATATTGCAAACAAACAATAATCTGGTTAAGTAGG 674206 32 100.0 36 ................................ TTGACTTATTCGGGTTATTTTTTGCGATCCAATCTT 674138 32 100.0 35 ................................ GTGATAATCTTGCTATTGTTGGGCGTGGAATCAAT 674071 32 100.0 36 ................................ ACCTTTACAACCAATCAAGCAAAGGCAAAACAACCA 674003 32 100.0 34 ................................ GCCGTTAGTACTTACAATATCATAACCGTTTCTA 673937 32 100.0 35 ................................ CTGTAAAGGCAGTTTGTCACCCTGCTACACGCTAT 673870 32 100.0 35 ................................ CATTCGCCGCTCTGTTTATCCTGCCATTTTTCACT 673803 32 100.0 37 ................................ TCTTTTCCGTTGGATTATCTTTATCAAATCTAAACCT 673734 32 100.0 34 ................................ TTTAAAAGATCAACCGAATGCACCGCTTAATGAA 673668 32 100.0 37 ................................ AAACAATGAAAAATACAATGATGTTGCTGTTATAGAG 673599 32 100.0 32 ................................ CTACTCTTCAGGCTTAGCTGTTAAAAACAGTT 673535 32 100.0 34 ................................ TTCGCAAATGAATACCTTAATGCCTACTTAACCG 673469 32 100.0 33 ................................ ATTCATTTTCTTGCTCCTGTTTTTTGGTAATAA 673404 32 100.0 34 ................................ TACCTAAAAATCCTCTTAATCTGACTAAATTAAG 673338 32 100.0 34 ................................ TGATTTTGGCACGAATAACCGAGAAAAGACGGTT 673272 32 100.0 37 ................................ TCGTTAAATTCCATTTCAACGCCGTTAAACGCTGCAA 673203 32 100.0 34 ................................ CACTCAAGCAAGTAAGCAGTGCTGCCCTTGACCT 673137 32 100.0 36 ................................ ATTCTGCAGTGCCGTTGCCGGTAACCAGTACAGGGT 673069 32 100.0 33 ................................ AGAAGAGTTTTTAGAGGGGGCAATGTTTGGTTG 673004 32 100.0 35 ................................ ACCTCGATCGAACATTAATCTTGTCCGTTTACGGC 672937 32 100.0 35 ................................ AGTTTAAGAAATGACGAAAAAACAAAAGAAGTTAG 672870 32 100.0 33 ................................ ATTTTATTGCGTTCCGCCAATTCTTTAGCAGTA 672805 32 100.0 36 ................................ CCTAATGGGAAACACGATGACCGGATAGATGCACTT 672737 32 100.0 35 ................................ AATGCTTCTATGTTGAGGTCTGGATTTAATCTTTT 672670 32 100.0 34 ................................ TCTTTTGTCATTTCTTTTTGATTGATAATCATTT 672604 32 100.0 33 ................................ AGTTAATAGGGGGGGCCAATGCCTAGAACACTG 672539 32 100.0 34 ................................ AAGTAAAAGTAAGACGAGGCGCACAGGTAGATTA 672473 32 100.0 35 ................................ ATCCCAATATTGCTTTATATAGCCGATATTAAGTA 672406 32 100.0 35 ................................ AAGAAAGATCAGTTTGGGTGAATATCCGTTTTTAT 672339 32 96.9 34 ................A............... CATTTTCTGGATCTATCATATGCCGCGCGAACCT 672273 32 100.0 37 ................................ TCGTTTCCCCTAGCCAACATTCCAACATCAGCCAAAA 672204 32 100.0 35 ................................ TACTAACTCAGGGCAAGGTGTTTGACTTGGGATAG 672137 32 100.0 36 ................................ ATTTTTATATGTGAGAGTTTTCATAATTTTTTCCTT 672069 32 100.0 36 ................................ TTACGCAGATCAATCCTAACAAAACCTTGCTAGAGT 672001 32 100.0 35 ................................ ACTTTGTATGGCAGGGGCATTAAAAGGCTGATGAT 671934 32 100.0 34 ................................ CTAACACTTACTTATCGCAAGTTAAGAAAGTTTC 671868 32 100.0 36 ................................ TACCATGTCAACAAATCTACCTTTATTAGTGATAAA 671800 32 100.0 36 ................................ GACGTATTTAATGCAAAAAAATTTATCGTTAAATTC 671732 32 87.5 0 .....A.....................T..GT | ========== ====== ====== ====== ================================ ===================================== ================== 49 32 99.7 35 CGGTCGCCTCACGCGCGACCGTGAATTGAAAC # Left flank : CGTTAGGAGAACATTATGTTGATGCTGATTACTTATGACATCTCTTTTGATGATCCGCAAGGACAAAAAAGATTACGACAAATAGCAAAGCTTTGCTTAGATTATGGGGTGCGCGTACAATATTCCGTCTTTGAATGCGATATTACTCCGGATCAATGGGTTAAACTAAAAACTAAATTATTGGACATTTATCAACCGGAATGTGACAGTTTACGTTTTTACCATCTCGGTAGTAAATGGCGCAAAAAAGTTGAACATCATGGCGCTAAACCGGCATTTGATATTTTCCAAGATACAATTATTTTGTGATCGCCAACCTATAGTTCTCACTAAAATAGTGTAAGGTTAGCGATTTATCATTGTTCTTTAAAAATCAATAAGTTAATAATTTAATACATCCTATTTTATTTTATGATATACTCGTCCACCGCATATAAATAAAGATATTGGCGAAATAGGGGAAGTAAGCCTTTATTTTTGTTAATGTTTTAGTATATGCT # Right flank : CAATACCAAATCATCTCAGTTGGCATACATCTCTTTTCAACAATTAAGATCCACTAAAAATGTCGTCATTAATCATTACCTAACACATTCAAAAAATCCGCTACTGTGTGGAATGAGCCAAAAATCAACAACAGATCCTCTTTTTGTGCCTTATTTAAAGCAATATCTACACCCTGTAACATTGAATTAACTGCCTGGCTTTCCAATAAATTATGATTTTTTTCTGTCACTAACTGTAACTTCCGTTGTAATTCAGTAGCACTTTGTCCTCTTTCGCCAGCCAAAGGAACACAAATCCACGCTGTAATAAAAGGTAACAATGGTGTTAATACACCTATGGCATCTTTATCCTGCAAAATACCGCAAATAGCATAAATATGACGATAATTTGCTTTCTTTTGTGCTAATTGTGTTGCTAAATAACGTGCCGCGTGTGGATTATGTCCAACATCCAGCACAATTTGCGGTAAATTTTTGCCTTCTACATTAAATCGTTGAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGTCGCCTCACGCGCGACCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 2 1048849-1049295 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGGZ01000001.1 Gallibacterium anatis strain NCTC11413, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1048849 28 100.0 32 ............................ ATTGCAAAGTGTGTTATGACGCACTCCCTGTA 1048909 28 100.0 32 ............................ GTTTAACCGTTTAAACACTATTTAGCTAGTGA 1048969 28 100.0 32 ............................ CCAACAAAGGAGGTAAAAATGGAAAAATCAAA 1049029 28 100.0 32 ............................ GTTATTACACCGTTTAACGGTTAAACAGTCTA 1049089 28 100.0 32 ............................ AAGAACATTTATTTGATGACTTTATCATAACA 1049149 28 100.0 32 ............................ TTAGCCAATAGGCTGTTCATTGTTGATTGATA 1049209 28 100.0 32 ............................ TAATTTAATCGCGAATTTAACTATTAAATTAC 1049269 27 78.6 0 ..............-..A.AT..TA... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 97.3 32 CTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CTGCTTTTACTCAAAATTGATGCTTTAAAAAATTACTTTATTATCAATGAAATAGCTCCTATCCCTGAAAAAACAACAGCTGTCCGTTACCAACGGATACAACATAAAGGGAAAAGTGCTTTACGCCGTGCAGAAAAACGTATGAAACACAGAAAAGAATTTTCAGCTGAAATTTTAGAAAAAATGGAGGCTAAACAAGCGCAAATCAAACGTTACCCACATGTTTTCTTAAAAAGTAGCAGCACTCATCAAGCAAAAATGTTACTGGAAATAAGGCAAATAATATGTTCTAAGCCTAATGAGGGGCAATTTACGGGATATGGTTTAAGTCAAGCTGCATCAGCCACTGTTCCTCACTTTTAATCAATAACCCTTTTTTGGAGATACTAAAAAATCTATCAAAATATCAATAGGTTATAAAACACCTCTAAAAAAGGTTTTTTATCTTAAAATGTTCTTTAACAATTGACTCTCCTTATATCGTAAGGTATTTGTGTCTA # Right flank : ATACAATTACTTGATTAAATCAGGTTTAAATAGGATTTAAACAATATTTAAATCCTATTGTTCATCTTTTTTACACCAAAATCCCAAAAATTCATTAAACTTCCACTCTGTTTCAGTTTGCCCTTTCTGCGGCAATGAAACGGTTGCATAATGCAATGCAACTATTTCAAGTTTGTCATTATTCAATGCATCTGCTAATTCATCCAACACCGTACTCAAGGGAGAAACAAGCCAAGGCTTAATTTGATCTGCACCCCAAAAGTTGGACTTATTATCCAACAACATACAAAGGTGCAGATTTTTTATGACTAAATATAACCAAACATTTAAACAACAAGTGGTAGATTTCTACTTTCAACACGAGGAAAACCTTTCTTTAACCTGTCGTACATTTACCGTGTCTAAACGCACATTAAGGCGTTGGATTGCCCAATATCAACATTCAGGTATAAAGGGCTTAGCCGTGCTGCATACCAAACGAACCTACACCCCAGAGTTTA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //