Array 1 350697-354021 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMCI01000001.1 Haloferax sulfurifontis strain CCM 7217 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 350697 30 100.0 35 .............................. TCCCGCAGTTGGGCGCTCCCCTGTTGCATGAGCGC 350762 30 100.0 34 .............................. TCGCTGAAGGGGCGCAGGCCTTTCAGACTCGTCG 350826 30 100.0 36 .............................. GAAGAACGATAGGTTTATGTAGATAGCCATACAATA 350892 30 100.0 36 .............................. CGGCCCTCCTATCGTACCCCATGCCTGACGATAGCG 350958 30 100.0 36 .............................. CTCTACTACCGCTGGGGGTGACGCGAATCGCGGAGG 351024 30 100.0 36 .............................. TGTCCACAGTCGGGCGTCTCCCCGTCACTGAACAGG 351090 30 100.0 38 .............................. TTGAAAAGATGGAATACGACACCCTGTCGGAGTAGAGA 351158 30 100.0 37 .............................. AGTTCCGGGTGGCGACGAGGATGAGCGCGACAATCGC 351225 30 100.0 33 .............................. TGGTAATCTATCTGGTCGCCAGCAGACCAGCGG 351288 30 100.0 40 .............................. GAACACGAGGATTTAACCCACGATTGTATCCCGTGTCATA 351358 30 100.0 37 .............................. GATTCGCGGGACGCTCTTGGCGTGTCCTTCGTGTCTC 351425 30 100.0 36 .............................. ACACTCCGCGACGAGATAGTGTTTTGGCATTGGGTG 351491 30 100.0 35 .............................. GACCGTCGGCGTTCGGTCGGCGTAGTGCCCGGCGC 351556 30 100.0 37 .............................. AAGATTAACCAGTACGGCACCGTCACGACCACGAATT 351623 30 100.0 35 .............................. GGTGTACGAAGTGCCCGCCACGCGACCGCGTGTCG 351688 30 100.0 38 .............................. CACGATAAAGCGGTCGAACGGAAAGAATCGCACGTCGC 351756 30 100.0 37 .............................. AGATTCCCCGATTTCAGGTACAGGTCCACGTCTCCGG 351823 30 100.0 35 .............................. CCAAGAGCGTCCCCAAGAGCGATAGTGACGAGACC 351888 30 100.0 35 .............................. CCGGGGAGGACGCCGTTTGCGTCGGTCGCGTTGGG 351953 30 100.0 38 .............................. ACGGTCTGTCTCTTGGTCCCAATCCTGACGGGACTGGC 352021 30 100.0 36 .............................. TTAACGTGGTTCTCTTTCCCGTGTGAGAGGTAAAAT 352087 30 100.0 37 .............................. CGTGGCGAGACGGCGACGTGTCGGGGGCGCAGTCCCT 352154 30 100.0 35 .............................. TGGTTGAGGAGTTGGCTATGTCGGCGTCGGCCCCG 352219 30 100.0 35 .............................. GCGTTGTCAAGCGAGACGTAGAGCGAGCGCGTCGA 352284 30 100.0 35 .............................. CGCCCGGTGCCGTGCGTGTCTCGCCGACGCGACGC 352349 30 100.0 36 .............................. ATGCCGCCGATTTTGGAGCGAACTGTCCACAGTACG 352415 30 100.0 37 .............................. TGGTTTCGCCCAGCCCCCGCGACGACGACGGCAACAT 352482 30 100.0 35 .............................. CCGAAGTTCACGGAAACGCTTGGCACGTCCACCCG 352547 30 100.0 37 .............................. CTGTTTGACCTTGTCGTCGGACGCGCTCGCGGCGATG 352614 30 100.0 35 .............................. CGGATTGCGTCGAACATTACACTTCGGTCGATGCC 352679 30 100.0 37 .............................. TGGACAGACTACCCCCGGGGTTGACGCGGTCAAGACG 352746 30 100.0 36 .............................. AACGTCAACCCCGGCAACGGCGTCCCCGACGAGCCA 352812 30 100.0 35 .............................. GACCTCGTCGGATATCACACGCACCAACGTCGAGA 352877 30 100.0 35 .............................. GACATCGACCCGTCGGAACTCGACTTCGACATCCG 352942 30 100.0 38 .............................. GTCGACTGTGTCGCTTATCCCGGCCGAATCCGGCAAGG 353010 30 100.0 35 .............................. TTGTCGTTGTCGTCGTTGTCGTCGTCGCTGCTACT 353075 30 100.0 37 .............................. ACCCTTGGGGTAGTCCGCCCGGAATCGCCTTCCAACC 353142 30 100.0 37 .............................. CTCCCGAACCAGCGATTACTCCACCGTTTCACCACTC 353209 30 100.0 37 .............................. GGCTCGGAGAGTGTGGTTGCGTAGTGCGCCCCACCGC 353276 30 100.0 36 .............................. GCTGTCGATAATCGGCAGGTCGTCAGTATCTATCAG 353342 30 100.0 33 .............................. GCGAAGAAATCGTAGACTGTCGCGTTTGCGCTT 353405 30 100.0 36 .............................. TTGTAGGGAAGGGTCTACCATGTAGCCGTCCTCGGA 353471 30 100.0 36 .............................. TATCCTGTACGACGCGGCCAGCGAGACGTTCGAAGC 353537 30 100.0 36 .............................. CCGTTCGCATCGCTATCCCGCGGTACGAGCAAATCA 353603 30 100.0 36 .............................. GTGCGCAGACCTCGGTCGGGCAACCAATCTGTCACG 353669 30 100.0 33 .............................. TGATTGAGGACGGCGTCAGCAGCGAGTCCGGCG 353732 30 100.0 36 .............................. CTCGAAGCGGTCTCGAATCTCCGCTGTCGAGAGATT 353798 30 100.0 34 .............................. GCATCGCGGCTTCGACGCGGACCCGACGCTTCGT 353862 30 100.0 35 .............................. AAGGACTACGCCGCCGAGCACGGCTACGACATCGC 353927 30 100.0 35 .............................. CGTCGAGGGATTGCTGCTGGTCGTCGCTCATTGGG 353992 30 86.7 0 ...............G..C.A.......T. | ========== ====== ====== ====== ============================== ======================================== ================== 51 30 99.7 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : ACAACTTCGAGGCGCTCCGCGCCGGCGAGCGCTCGTTCGAAGAAATCGCCGCGCCGACGATGACGCTCGCCGCCGACACGAACGTCAGCGACGCGTTCGACCAGTTCCAAGCCGAAGACCAGGAACTCGCGCTCGTCTTACGAGACGGCGCGGTCGTCGGCCTCCTCACCGCGACCGACGCCCTCGAAGCGGTCATGGGCGAACTCGACGACCCGCTCGACTAACACGGCGGTCGCGGTTTCGGTCCCGTTTTTCCGGGGTTTTCCGGTCGCTAGTCGCGACTCACGACGACCGAAGTCGCCGAGTCGAGCGTGCTCGTGGTGACTCACGGGTGGCTTGGGGCGTGTCGAGTTGGTGCCTGACCGAGGAGTCGGTCTCAACAGACCCAGTACTGACTCGTTTCCGTCGACCCCCCGGGGGGTACGGGGGAATTGAGGGTCGACGGAAACGTTGATGTGAGTTCGCTATGTACAGCCGTCTACCCCCGTGAATTCGGACGG # Right flank : CCCGTTCGGGAGTACAGCCATCGGTGACGCGACAGCAGAGAACACCACCGCTTCCAGTGAAAATCGAGAGACGACGTCGTGACTCGCGTTGCAGTTGTCCACGTGACGAAATCGAAGAATGCCCGGGGTGGGCTCCGAACCCACGATCTCCGCATGTCCCAGGTGCGAGGCCGGCATGACCTCGCGGGGGGCGGAGGCTTCCAAGGCGTTCCGCACCGATTGTGAAACCCTATGAGTGCGGCGCTATGTCCAGCTAAGCCACCCGGGCTCAACTTCCCGTTGTGTGCTGGTTGTATTTAAGCTTCTCATCTCCGACGACCGCGGGACGAGTCACCACGCCACTCGATTCGAGTCATCACCCGCGGATTTATGTCCCAACACCGGGTGGACACACGCATGAGCCAACCGGAGATCGTCCAGTCCGTCCTCGGAGAGGAAGACGTGGTGACCCGCGTCCACCTCGGGGGCGAGGACGAACTGTTTGTAACTCCGACGCGGAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 141812-147176 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMCI01000006.1 Haloferax sulfurifontis strain CCM 7217 sequence06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 141812 30 100.0 35 .............................. GAGTTCCGCGACGTCGTCGGCGACGGCTTGGACTT 141877 30 100.0 35 .............................. GTCATCGAGGAGTTCGTCACTCGGGATGTGGATGA 141942 30 100.0 36 .............................. CACCCACGCGAGGTATCCCGGCCAAAGGTCGCCTCG 142008 30 100.0 37 .............................. GACATCCGCAACGACTGGCGCAACTCGCAGGACAACG 142075 30 100.0 38 .............................. GGTGGGCGCTCACAAAGGCTTATCCCCGCGCTACTGGT 142143 30 100.0 37 .............................. CCACGACGGTTTCGAATCCACGTCGACGGCACGGAGT 142210 30 100.0 36 .............................. CGTCCGCGTCGAACAGGACGAACACGACCCACGCGT 142276 30 100.0 37 .............................. GGCTTCGAAGCGCACGTAGTCGAGCGCGCCGCGAATC 142343 30 100.0 37 .............................. GCGACCATCGACGCGTCGCTCGACGTGCTCGAAGACG 142410 30 100.0 37 .............................. GCGATGTGGATTCCACTCGCGGGGCTATTCACAGCGG 142477 30 100.0 36 .............................. ACAACCGAGATGGTAGACGACCCCGCGCTCCGGGTC 142543 30 100.0 37 .............................. CTCGTCCGCATGCAGAAGGAAGTCCCCATCCTCGACA 142610 30 100.0 36 .............................. GACGCGACGGTGGCGGCCTCGCGCCTCGACGTGCCG 142676 30 100.0 37 .............................. TTGCAGCCGGTCGTGGAAGGCACCCCAGTCGTTGGCG 142743 30 100.0 37 .............................. GCGCATGGGAGTCGGTCATCGATACACTCGCACTCAA 142810 30 100.0 34 .............................. GCTCTATCAGTCGAACCTGCGATATGATGGGCGA 142874 30 100.0 39 .............................. CGCTCGTCCCCGGACGGGCCGTTGCCTGTTGCTCGGCGC 142943 30 100.0 34 .............................. GCCAGCACTCCCCGACGGATCTCCTCGGCGGTGC 143007 30 100.0 36 .............................. ACGCACACGTCGCCGAACCGGGCGACGTATATCGGC 143073 30 100.0 37 .............................. CGCCCACGTCTTCACGGCTGGACTGTCGGGTGTGATG 143140 30 100.0 34 .............................. ACGTCCGAGGGCGACGAGGTCACAGACGACGCGG 143204 30 100.0 36 .............................. ACGTTTTGGGTCCGGTCCGCCCCGGTGCGGCCACGA 143270 30 100.0 35 .............................. ACGTTCAATCCGATTCATCGCATTGTGCCACACCT 143335 30 100.0 37 .............................. GGACACCCGCACCCATGGCTCAGGAATTTAGGAAAGA 143402 30 100.0 37 .............................. ACGGAGTCCGACACATCGCGCATGGAGCTTCCAGACG 143469 30 100.0 36 .............................. GCTCTCGGCCCCTTGGTAGTCGGTGATTTGGACGCG 143535 30 100.0 35 .............................. ATTCCTCTCCCCCGGTGCAGTTTGTAGTATGTGTA 143600 30 100.0 34 .............................. GAACCGATAGCCTCGGACCAAACGACCGATCCGC 143664 30 100.0 34 .............................. CGCAGGTGGATTTCGTCGCTATCGACTCGCGGGT 143728 30 100.0 37 .............................. GTGCCGGATGAGTTGCTCGCCACAGTCCGGGCAACGT 143795 30 100.0 38 .............................. GAACGGTAAAGAATCGTCTCACAAACGAATTGCGGACT 143863 30 100.0 36 .............................. ATTGTTTCCCGACGAAACGGGAAGCGATTGAGTACT 143929 30 100.0 33 .............................. TCGAAACCCATCTGACTGACCTCGGGAAGAAGA 143992 30 100.0 36 .............................. ACTGCCAGATTTAGTAATAACAGCGTTATCTTTGTT 144058 30 100.0 34 .............................. ACATCTCCTGGCACCGGTGGCAGCGGACAGACCC 144122 30 100.0 36 .............................. TCGTTGTACTCCTCGGCCAGCGAAGCAGCAACCGTT 144188 30 100.0 37 .............................. CCTCCAACACGGGGGAGGTTGTCGATTGCACCCTGTG 144255 30 100.0 37 .............................. CGTACGCGGGGTAATCCACATTGCCCACATAATGTGC 144322 30 100.0 35 .............................. CGGGCCAAACGCGACCTCATCGACGGCCTGGACGA 144387 30 100.0 36 .............................. CCCGAGTGCGTGTAGCGAACACGCTCGATGACTGCG 144453 30 100.0 37 .............................. ACTGTCCGTACCCTTGGGAACTTCAATGGATACACAA 144520 30 100.0 36 .............................. GGCTACGTGTTCCCAATGATGCGAAACGTGTCTCGT 144586 30 100.0 37 .............................. ACGTTGCTCGAAAAGCGAGCGACGATAATTGGTGGCG 144653 30 100.0 35 .............................. ACGCGGAGTGTGTCGCCGGGGTTGACCGTCCCTGC 144718 30 100.0 37 .............................. TTGCCTTCCTCGGCGTCCCAGGGGCCGGGGTACTCGG 144785 30 100.0 37 .............................. GAAGACTTGGCAAGTGGCGTCCTGTTGGGGCGGTTAA 144852 30 100.0 36 .............................. ATGTTTCTATGATATGTCGTTAATTTCGTTGACGTC 144918 30 100.0 37 .............................. TATCTCGGGGAGAACGAGAACGGTACTCGGGCGCTGA 144985 30 100.0 37 .............................. TTATACCATTCTGGCGTATCATCCGACACTATAACGT 145052 30 100.0 34 .............................. ATGGTCAATTGCATCCTCGTTTACATCGTCCCAC 145116 30 100.0 36 .............................. CCTTGGACGTTTTCGCCTTCAACGTTTCGCTCGATT 145182 30 100.0 36 .............................. TCAATAGTGCGGACGTGCTGGCGGATGGCGCTGTCG 145248 30 100.0 34 .............................. GTCTACATCATCGGGTGCCTCGGATGCTGGATTC 145312 30 100.0 35 .............................. ACAGGTCCGACCGTCACCGTTCAGGCCACCCCATC 145377 30 100.0 37 .............................. TATTACCACACCAAAGAAGCGCGGGACGCTTGTGAGA 145444 30 100.0 36 .............................. CGATATATCCATCTCCGGGGTCTGTGTCTTCTGCGC 145510 30 100.0 36 .............................. ACGGTCCAACGCTCCACCCAACTCGTCACTCAAGAG 145576 30 100.0 36 .............................. CTCCGCGGGCGCGTCCAGCCCGTAGCGTTCCGCAAA 145642 30 100.0 37 .............................. ACCCGGTTCGAGAGTCCGGGCGACGAACTCGACTTCG 145709 30 100.0 36 .............................. GCACCGAACATCATCACGGGCGAGCGTGGTGATAGA 145775 30 100.0 37 .............................. GGTCAACGCGGAGCTTCTCAACCGAGACAACTCCATC 145842 30 100.0 36 .............................. CGCCGGGGCCTTGGCCGTCGCCGGGGCCATAGGCAT 145908 30 100.0 35 .............................. CAAGCGCGTCGTCGTAACTCACGTTTGCATCAGAA 145973 30 100.0 33 .............................. GACCGAGGGCGTGGGAGAGTCGTAGACTTTCCA 146036 30 100.0 36 .............................. TTGTCTTCGCAAACGGGGCGGAAGACAGACGCTAAC 146102 30 100.0 35 .............................. CTCGTCGTCCTCACCGCGGACCGCGACCTGTTCGA 146167 30 100.0 37 .............................. CACATGAAGCCGCGGTCGCGCCAGACGTCGACGGCGT 146234 30 100.0 35 .............................. TCTGAGTCTAGCTCGGATATAGATGCCTGCTGAGC 146299 30 100.0 37 .............................. GGTCGCCAAAGCGAGCGTAGAGCGTCGCTAACGACGG 146366 30 100.0 33 .............................. CTTGTCCGCATGACGGTCACCGAAATGGTCGAC 146429 30 100.0 35 .............................. CCATCCCGGCGCTTCGGAAATATAATCACTATACC 146494 30 100.0 35 .............................. CCATCCCGGCGCTTCGGAAATATAATCACTATACC 146559 30 100.0 34 .............................. GTCGGTCGCGTCACGCTCGCAGGCGTAGACGCTG 146623 30 100.0 35 .............................. GGCCTCTATCAGGAGATGGAACTCGACCAGACGCG 146688 30 100.0 35 .............................. TGACCAACGACAGTCGCAACGGCCGACCGAGGTTG 146753 30 100.0 36 .............................. GCCACCCGTGACCTTGATGACGAGTCGGGGGATGGT 146819 30 100.0 36 .............................. ACGACATAACCGAGTGATTGAACCCGGTGATATTGT 146885 30 100.0 37 .............................. TCGACCCGCTCCTCCAACCGCGCTATCTCGGTGTCCA 146952 30 100.0 34 .............................. CGTCTCGCGGTAGTCGTCGGCGGCGCTCGCGAGG 147016 30 100.0 35 .............................. GAGTTTGAATTTTTCACCAGTGATTCGTTGTAACC 147081 30 100.0 36 .............................. CCCATCCCGGCGTCCGCCGGCACGTCGTAGGTCCAC 147147 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 82 30 100.0 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : TCGTCGTCGGCACCTCCGTCGACCGCATCCGCGAGCGCATCATCGGCGACGTCCACACCTACGGCGGCCGCTCCACCATCGGCGACTGGTACCGGACGAACCGCGCGCTCCGCGAACGGGTCGACGACCTGCTCGACTCCGCGTGCGAGCGCCCGTACTTCGACGCCGACGAGATTCGCCGCCTCCAGCGCGAGGAACGCACGGGCGAAGCCGAACACATGAGCGCCATCTCCGGCATCATCACCGGCGAACTCTGGGTCCGCAAGTACATCGACCGCGAAGGCGAACGCGGAACCGCGAGTGTGGCGGAAGCCGAAGACGCACCACAACCGGCCGACTGAGGCCGGTGGGACTCTCGGTTGATTTTTCGAATCGTTGGTCGTGAGGGGGAAAGAGTCGTTTCCGTCGACCCCCCGGGGGGTACGAGGGAATTGAGGGTCGACGGAAACGTTCTTTTGAATTCGGTTCGTAAGCAGCATCACGCCCGTGGTTTCGGGACG # Right flank : CGACGGGGAATCAGCAACAACTCTCTGCGTCAACAGAGTTTCAGACGAACTTCAGTGAGTCGCGACCCGTCAAACTACGGGCATAATTTTATGTCGAGGAGCAAACAATCACAAAGACAACAATGAGTGCAGAAGGAGGTGTCGAGTAACGGTGCGGATTATGGCTCACTTATCGGCGCGTGCCGACGCCGCGTATCAGAACGATTACCATCACAAGATTCGCGGGCGAATCTGGAACGCGCTCGATGGGACGCCCTACGGAGAGCGACACGACTCCGGCGAGCCGCCGGGGTTCGCCTACTCGAATCCGTTTCCGCCCCGCGATATGCGGGAAGGTGACGATCGGAAGTTACTGGTCGCGTCTCCCGACGAGGAGCTGCTCGCGAACGTGGCGGCGAATCTGCTCGATGACCGAGAGTTCAACGTCGGTGAGATGCCGTTTCACGTCGACGAGGTAACGTCACTCGAACCCGACGTGGGCGAACCCGGGACCAGAGGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 156719-161669 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMCI01000006.1 Haloferax sulfurifontis strain CCM 7217 sequence06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 156719 30 100.0 34 .............................. GTAGTGCTCAATCGTCGCCTTGTGTGTGAGCGTC 156783 30 100.0 35 .............................. CTGCTGGTCGCGACCGCGGCCACCAGTGGCGTCGT 156848 30 100.0 33 .............................. GTGAACTACTACGAACTCGGCGATGTCGACCTG 156911 30 100.0 36 .............................. AGGCGAACGTCGGTCAGTACGCTGATGACGCGTATG 156977 30 100.0 36 .............................. CAGACCAAGATACACACGACGGTCGTCGCGAACCCG 157043 30 100.0 35 .............................. ATGTTCGCGGACTTGGTCGCGTCCGGGAACGGCTC 157108 30 100.0 35 .............................. GAGGTCTCGAACTCCGACCCCACATGGAACTACAA 157173 30 100.0 38 .............................. ACTCGTGGCAAGACGGGCTGATGAATCTTGACGACCCG 157241 30 100.0 37 .............................. GGCTTCGTCGGCGTCGGACGTGACGAGTTCGCGCCGG 157308 30 100.0 37 .............................. CGACTCGAATTGCCATCACCGACGCCGGGACTCTCTC 157375 30 100.0 37 .............................. GATGCCGACCGCTTGCCACTGGCCGTCGCGCCACACC 157442 30 100.0 37 .............................. ACTCCGGTCCCATGGCTCACGATTTTACAAAGGAAGA 157509 30 100.0 37 .............................. TCTATCGACGGGACCATCCTCGGCGCGGAGCTCGATG 157576 30 100.0 37 .............................. ACCATCCCGCTCCAGTCCCCCGCGGCGTTCGACAAGT 157643 30 100.0 36 .............................. TGGCGTTGGCTCCTCTGCCGGTAGGAGGCGCATCGG 157709 30 100.0 34 .............................. GGCTTCGAGACCGACGACGCCATCGCCGACGTGC 157773 30 100.0 37 .............................. GTCTGAAAAGTGTGGCTGGGGTGTTGGCGCACCCCAG 157840 30 100.0 36 .............................. CGTCTCTCTCCGCTCCGACTACACAGCGGACCTTTT 157906 30 100.0 35 .............................. GAGCTTGTGATAGTCGTCGTAATATGTTTTGTCGC 157971 30 100.0 38 .............................. CGCTCGAATCTTGAGGGGCAACTGTCACATCTGCCGTC 158039 30 100.0 33 .............................. ACCCACGAGTCCAGGTATTGTGGGCCGGAGAGA 158102 30 100.0 37 .............................. GCTCTTTTGAATGTCGTCATAGAGCGATGCGAAGCCA 158169 30 100.0 34 .............................. CTTTCGGCGCGGCACTACGAAGCGATAGACACGA 158233 30 100.0 32 .............................. CGTCGCGTCAACCCATCCGCTCCCATCGTAGA 158295 30 100.0 36 .............................. CGGTCTTGGCTCCGTCCGCCGCTCATGCGCGACCTC 158361 30 100.0 35 .............................. GTATTCGTGCGGCGGCCCGTGATGATGGACAACGC 158426 30 100.0 35 .............................. GATGAAGGCCCTCGAAGGAGCGCTGAGCTAAATGG 158491 30 100.0 36 .............................. TCGAAGTGGTCGCGAATCCGCGCGTTAGTGGTTGGC 158557 30 100.0 35 .............................. AACTGGGTTACTCGGGGAGTTGTATGCCCTCTCGG 158622 30 100.0 38 .............................. GAGTGGTGAAGTCCTCTTTGACGGGAGTAGTGTAAGCG 158690 30 100.0 35 .............................. GGCCGCGAATATGGATGCCTTCGCCCCCGAGACGA 158755 30 100.0 34 .............................. ACAATCCACGGGGTGAAGGCCGTCATCGAAAACA 158819 30 100.0 35 .............................. CTGCTCGTCTCGACCGCCGCCACGACCGGCGTCGT 158884 30 100.0 35 .............................. CCGTGATGACCAGCTCCCATGGGAAGACCGGCATG 158949 30 100.0 37 .............................. GTTATATCCGCCGCGTCGAAGACTACCGGCTCGCCTG 159016 30 100.0 36 .............................. CGACAACTCCTGACGCCAAAGAAACGACAAATCACG 159082 30 100.0 35 .............................. GCACAATATGGAGCCAACCCCACGGTCGGGGTTGC 159147 30 100.0 37 .............................. AAGCTAAAGTTATTCCGCCGAGCGTCCACGTACTTGT 159214 30 100.0 36 .............................. ACCGAGATAGTCACCCTGAGCGCCGGTGACGCCCGT 159280 30 100.0 37 .............................. TCTGTTCTGTGTCGCCTTGCGTCGGACTCGGGACGGT 159347 30 100.0 35 .............................. TCCTCGCTCATATCTGGTGTGAGTCGTTTCCGAGT 159412 30 100.0 34 .............................. AAACTTTAAAACTATCATCTGGGCTGTTTCTCGG 159476 30 100.0 35 .............................. CATGAGAGAGCCGCGTATGGCGTCTTGTAGTCCGA 159541 30 100.0 37 .............................. TTGAGGGGAGCCGGACGGTCGGCGTTCCCTCGAGCTC 159608 30 100.0 36 .............................. CATTCACGACCGCGACTTACGCGATCCCTGAGCTCG 159674 30 100.0 36 .............................. GGAACTCGTGACATTGACGGGGCGTTTTTCTTCACA 159740 30 100.0 37 .............................. GAACATCTCAACTGGTGATAACATATCATGACTGAGG 159807 30 100.0 35 .............................. CTCTATCTCGACATCAAGGACGACGCCGACAGCGC 159872 30 100.0 36 .............................. GGGCGTGAGTGTGAGCGTCAGGCCGGCGGGCTCGTC T [159889] 159939 30 100.0 33 .............................. CCGAGTGGGCCGACGACCTCGTCGACCGCGCGC 160002 30 100.0 33 .............................. GTCGTCTCCGCGGACGACCATTTCAAAATCATC 160065 30 100.0 34 .............................. ACCTCCTGCGCGCCGGTGGCGTCCTTGAAAAGGG 160129 30 100.0 35 .............................. CGACGGAACGTCTCGCGCCCGGAATCGGTCATCGC 160194 30 100.0 34 .............................. CTCCCAGTCTGCTTTGAGCGCGTCACGCTTTGAC 160258 30 100.0 36 .............................. TATCGGATGATGATGGCCCGCCACGAGACATCTCGG 160324 30 100.0 35 .............................. CTGTACAACGTCGTCGGGGTCGACACCAGCGCCGT 160389 30 100.0 35 .............................. TCACCTCGTGACTCAGCCCTCCGACGGAGTTCGTT 160454 30 100.0 37 .............................. GCGGCACCGTACGACCGTCTTCGGGTCGTCGCGCATA 160521 30 100.0 34 .............................. AGGTGGTCGTAGTCGCTGAAGTACGGCCGCAGTG 160585 30 100.0 37 .............................. TCCGCCCACCATTGGTTGGCGTAGCGGTCCAACCACA 160652 30 100.0 36 .............................. TTATGGCAATGCAAAGAAACGAGACCGAAACGCAGT 160718 30 100.0 36 .............................. GGCCGCTATCGCTACCTGCTCCTCGACGCCGCCCGC 160784 30 100.0 35 .............................. CAGTATCCTGCTACTACGCCCACCTCTGCCCCCCG 160849 30 100.0 37 .............................. GTCCAGCGGGAGTCCGAGGACGGTAGCCTCCGGGACC 160916 30 100.0 34 .............................. CGGACGGCGACGGCATGGGTCTCGTTTTTCTCGA 160980 30 100.0 35 .............................. CCCACGATTTTACCGTCTTATGGTCCGGGAGGAAA 161045 30 100.0 35 .............................. TCCATGAACACACCGAGGCCGATGATGAGGAAGGC 161110 30 100.0 37 .............................. GTGGTCGGTCGGACGTCCGGGGCGGTGCCGGTGTCGA 161177 30 100.0 37 .............................. ACGAAGCCAAGGTGTCGAACGTCGCGGAAGCCCAAAA 161244 30 100.0 35 .............................. GGCCAATCGACGACGTATTCGGTGTCGACGGAAGT 161309 30 100.0 35 .............................. CGCTTTGAAAATAGCTACCGGCGGCCGCCACGGGC 161374 30 100.0 36 .............................. CCGAGCATCCGGTACGGGATGCCCTGCTCGTCGGTT 161440 30 100.0 37 .............................. ATTTCGTCGATGTCGTTGCGGAGGTCCTGCGCCCATG 161507 30 100.0 37 .............................. TATCCAACCAACCGATCCGGAAAAGTCTACCACACGT 161574 30 93.3 36 ...................G..T....... GCGTTCGAGGAGCCGGACCTGTCGGACGACTACGTC 161640 30 90.0 0 ..........G........G..A....... | ========== ====== ====== ====== ============================== ====================================== ================== 76 30 99.8 36 GTTTCAGACGAACCCTTGTTGGGTTGAAGC # Left flank : ACGCTTGAGCGGACCGTCGACCATCCGAAGCTCAACCGCAAGGTGAGCTACCAGTACCTGCTTCGCCTCGAAGCGTACAAACTGAAAAAGCATCTGCTAACCGGAGAGGAGTACGAACCCTTCGAACGGTGGTGGTGAGATGTACGTCGTGATGGTGTACGACCTCGAAGCCGAACGGACGCACAAAGCGCTCAAACTGGGGCGGCGCTATCTGACGCACGTGCAAAACTCCGTCCTCGAAGGGGAGATCTCCGAAGGGGATTTAGCGACGCTCCGAAACGAGGTCGAAGACCTGTTGAAGCCGGGTGAATCCACGATCATCTACGAACTGTCCTCGGACGCGCTGCTCAACCGCTCGGTGTACGGCGACGATCCGACCGACGAGAAACGTTTTCTCTGAGTTCCGTCGACCCCCCGGTCAATTCGGATTACTGACGGTCGACGGAACTTCTTTATCGTAGTCGTCCTTCAGAAGGTCTGTGTCCGTGATATCGGGCATG # Right flank : CGTCAGCTGAGCTACCGTCCGCTTGAACCGAGCGCGACTCAAACAATCGGGGCGGTCGACGGTCAGCGGCGAAAAAACCACGCGAAAGAAACAGACCCCGACGCTACGCCGCCTCGGCGTACATCGCCACCAGCTCGTCCGCGTTCGACTGCCACGAGTAGCGCTCTTCGATGGCCGCCCGGTTCGTCCGACCCATGCGGACGGCTTCCTCGGGGTCGGAGACGAGTCGCGCGAGCGCCCGCGCCAGTTCCTCGGCGTCGCCGGGCGTGACGAGAATCCCGCGGTCGTCGGTGATGACCTCGGGGATACTGCCGACGGGGGTGGTCACGATGGCGTTTCCGCCGGCCATGCCTTCGAGCATGGCGATGGGAAGCCCCTCGGCGTAGGTCGGGAGGACGAACACGGTGCCGCGGCTGAGGAGGTCGCGCTTGTCTTCCTCGGAGAGGAAGCCGAGGTACGAGACGTTGTCGTGGGCGGCGGCGACCGCCTCGGCGCGGTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //