Array 1 2162696-2153379 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060789.1 Tessaracoccus defluvii strain JCM 17540 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================= ================== 2162695 28 96.4 32 ...........................C CGACAGGTCAGCCTCTACCGTGGCCTCATCGG G [2162675] 2162634 28 100.0 31 ............................ CCCCACCGTCACCGGAGGGCTGCGTGGAGCG G [2162614] 2162573 28 100.0 32 ............................ CCCTGATCGCACTGCTCGAGCAGGCAGGCCCC G [2162553] 2162512 28 100.0 32 ............................ TCCGCGGTATCGGCGCTGGCCTGCATGATGGT G [2162491] 2162451 28 100.0 32 ............................ GGCATCCAGCTGCGACTGCGGCAGCGCCCCAC G [2162430] 2162390 28 96.4 32 ...........................C TTCCCCATACTGGGGAGTACGTCAATCCATAC G [2162368] 2162329 28 100.0 33 ............................ GTACGGGATGACGAAGTCCCGGATATAGCCACC G [2162308] 2162267 28 100.0 32 ............................ ACTTGCTTGTCGCTCGGCCTGGTGAGTTCGTA G [2162246] 2162206 28 100.0 32 ............................ ACGTTGGCCGACTTCATCATGAAGAATGTTGT G [2162185] 2162145 28 100.0 32 ............................ TAAGCGCGGGGGAGGGCAGCACCGTGGCGACA G [2162124] 2162084 28 96.4 32 ...........................C CCACACACCGGGCAGGGTGAGGTTCCTCGGGT G [2162064] 2162023 28 96.4 32 ...........................C AGCCGACTACTCGGCCGCCAGGGTCAGGTAGA G [2162001] 2161962 28 96.4 32 ...........................C GAGCTGATCCAGACCGGCGCGGATCTCGCGTC G [2161940] 2161901 27 96.4 32 ........-................... GTCGTGGGCAAGCCGACGTTTGCGGCGGGGGT G [2161881] 2161841 28 96.4 32 ...........................T GGACTTACCTACGGAGATAGCGCCGTCCGTCA G [2161819] 2161780 28 96.4 32 ...........................C CAGGCCCGCACCACGGGCCGGACGCTGCCGTA G [2161760] 2161719 28 100.0 32 ............................ TCACCGAGACGATCAACTCCGGCGACCGGCGC G [2161698] 2161658 28 100.0 32 ............................ CTGGGCTCCCAATCGGCGGCGCTGAGGTCGAG G [2161638] 2161597 28 100.0 32 ............................ GTGCCCAGCGGGTAGGCCGCGTTCCGGGCACA G [2161576] 2161536 28 96.4 32 ...........................T GGTTCGCTGCACAAAACAACTGCCAGCCATTG G [2161514] 2161475 28 96.4 32 ...........................C GGTCACTTCACACTCACAGCCGGCCACCTCGT G [2161453] 2161414 28 100.0 32 ............................ GCGGCCGGATATCTGGCCGCTGGCTTGGCTGC G [2161393] 2161353 28 96.4 32 ...........................C GACCAGACCAGACCAGATACAGACCATAAAGA G [2161331] 2161292 28 100.0 32 ............................ TCTGTCATCGTGGCCCGGGGCCCCGAGACAGG G [2161271] 2161231 28 100.0 31 ............................ CGATGGACGACGTGATCCGCACTGTCGAGAC G [2161211] 2161170 28 96.4 32 ...........................T CCACGGCCCGGTGTACTCGCCGTCGTAGATGC G [2161150] 2161109 28 100.0 31 ............................ CCGTGCATGGCGGCCAGTTCGGCTTCGACCT G [2161089] 2161048 28 100.0 32 ............................ AGCCGGCCGGGAGCGGAACGAAAGGATGGTCA G [2161027] 2160987 28 96.4 32 ...........................C CGCACGCTCTGGTTATGCCGGACGGAACTAGA G [2160967] 2160926 28 100.0 32 ............................ GGCGGCTTCAAGGGCAAGGTCACCCTCGTCGC G [2160905] 2160865 28 100.0 32 ............................ TCCGCCACCGCAGGCGGCACCAAGCGCGCCCG G [2160844] 2160804 28 96.4 32 ...........................T CAAGAGCGTCGCCTCGTCGGCCTGGTCCGCGA G [2160784] 2160743 28 96.4 32 ...........................C TGTGGACCGGTATTGCCGGGTCCCTCGGAAAT G [2160721] 2160682 27 96.4 32 ........-................... GAAGCCAGTGCCCACGATCGTGACAGCCTTCC G [2160662] 2160622 28 100.0 32 ............................ TCAAACTCGACACCGACCGACCGAAGCTTCGC G [2160601] 2160561 28 96.4 32 ...........................C GAGGCCGGAGCCGACGGCTACACCCCACGAGA G [2160539] 2160500 28 96.4 32 ...........................T AGTCCCATCGGAATGTCCTTTCGGGGGTACGG G [2160478] 2160439 28 96.4 32 ...........................T GTGTTCCTCGGGAGGTCCCAGGAGCTGGACGG G [2160417] 2160378 28 96.4 32 ...........................C TGCTCCGGGGTGCCGCTGACCGTCTTCGTGAC G [2160356] 2160317 28 100.0 32 ............................ GAGACCGCGTGAGCTACGACCTATGCCAAGCC G [2160296] 2160256 28 96.4 32 ...........................C GACACCCTCAACACTGCCGTGTTCAACATCGC G [2160234] 2160195 28 100.0 32 ............................ CAGGCTGGCCAGTCGGCTACCGCAACGCAGGT G [2160175] 2160134 28 100.0 32 ............................ GCCTAGAACGACAGCAGCCCCCGGCGATTGCC G [2160113] 2160073 28 96.4 32 ...........................C CTCATCCCCGCCGACCTGGTCGAGCGGTGCGC G [2160053] 2160012 28 96.4 32 ...........................C CGGTGGGTCTGGTGCGACGGGTGCGACGGGCT G [2159992] 2159951 28 100.0 32 ............................ GGGCCGTCTGGCGCGGTCATCGTGCCTGGCGG G [2159930] 2159890 28 100.0 32 ............................ CGTTCGAGTGCCGTCTTGGGCAGCGGGCCGGT G [2159870] 2159829 28 96.4 32 ...........................C CGGCGGCACCGGCACATGGTCCGTCATGGTCC G [2159809] 2159768 28 100.0 32 ............................ CGAACGCCGGCTCGACCGATGCCTCCGAGGAT G [2159748] 2159707 28 100.0 32 ............................ GCTGCTGCCGCTGCTGGCCTCACGCAGGCGCA G [2159686] 2159646 28 100.0 31 ............................ CGCCGCCTGCAACACCGAGCAGATCAGCCTG G [2159626] 2159585 28 96.4 32 ...........................C CGGGACCAGCCGAGCACCTGCGCGATCTCGGA G [2159565] 2159524 28 100.0 32 ............................ TTCGACGACCCGCGGGTCTGCGAGTTCGACGA G [2159503] 2159463 28 100.0 32 ............................ TACTGCCCGTTGGCATCCCGAGACAGGCGCAG G [2159442] 2159402 28 100.0 32 ............................ CTGAACTCGACCGGAGGCGGGCCATAGTTGAA G [2159382] 2159341 28 100.0 32 ............................ CTTTCGGCGGAGGCCGACGAGTTCGCTCGCGA G [2159321] 2159280 28 96.4 32 ...........................C CCCCGGCAGAGTTCCGGAAACGGACCCTCCAC G [2159260] 2159219 28 100.0 32 ............................ GGCACGGCTTTCGGTCTTGGTGATGCGGCAAC G [2159198] 2159158 28 100.0 31 ............................ CCGCGCCGAACCCCAGTTTCGAGGCCACGTC G [2159138] 2159097 28 96.4 32 ...........................C GGCCGTGCGCTACTGGGACGGCACGGCCATGG G [2159075] 2159036 28 96.4 32 ...........................C CGGTCCTGCTCCCCTTCGGAAATCCCGTTAAA G [2159016] 2158975 28 96.4 32 ...........................C CCGCCGGCCATGTCCTCGAGGCGGGGCGCGAT G [2158955] 2158914 28 100.0 32 ............................ GACCCGCTCGCCCACCTCGATGACGATGACGA G [2158893] 2158853 28 96.4 32 ...........................T ATGCGTAGTTGGACGGGGAGGACGGCGGGGCA G [2158831] 2158792 28 96.4 32 .....T...................... GCGAGGATAGGTGCCTGCATACTCATCGGATA G [2158771] 2158731 28 96.4 32 ...........................C ACCGCATCGAACCCCGCAGCCGCCGATCGGCT G [2158709] 2158670 28 96.4 32 ...........................T GTGTTCAGCAATCCACTCCCTATCCACCGGGA G [2158648] 2158609 28 100.0 32 ............................ CCGTTGGCGTGCATCACCTTCACACGGGCCGT G [2158589] 2158548 28 100.0 32 ............................ CCGTTGGCGTGCATCACCTTCACACGGGCCGT G [2158528] 2158487 28 100.0 32 ............................ GCCGAGGATCTCGGCGACGCGCTTTTCGCCAT G [2158466] 2158426 28 100.0 32 ............................ TACGTCAAGATCGTGAACCCGTTCGCCGGCTG G [2158405] 2158365 28 96.4 32 ...........................C GGGCCCGACGGCTGGCAGGAGGTCACGGAGAC G [2158343] 2158304 28 100.0 32 ............................ CTCGGAGGCCATCGGGTCATGCGGGTCACAGA G [2158284] 2158243 28 100.0 32 ............................ TCGGCGGAGGTCCACCGGTTGGAGTCGGTGGC G [2158222] 2158182 28 100.0 32 ............................ CAGGCGTGCACCGTGCAGCACGTCAAACCTCG G [2158162] 2158121 28 100.0 31 ............................ CTCTGGCGGTGTTGGCGCGCCTGGAGGACGG G [2158101] 2158060 28 96.4 32 ...........................C CTCGGGTGCCTCACGCAGCAGCGCCTCGATGG G [2158040] 2157999 28 96.4 32 ...........................C GGCACGCTGCTCGACGACAGCGGCAGCGTCAC G [2157977] 2157938 28 100.0 32 ............................ TCTGTCATCGTGGCCCGGGGCCCCGAGACAGG G [2157917] 2157877 28 96.4 32 ...........................A GAGGCCGCGACCCGCACCGAGACCCCCACCCC G [2157855] 2157816 28 96.4 32 ...........................C CCCCAGCAGCCAATCCTTCGACAACCTAACCT G [2157796] 2157755 28 100.0 32 ............................ GACGGCGACGGTGCGGACGCTGTGTACTGGCT G [2157734] 2157694 28 96.4 32 ...........................C GGGCCGCAGGGTGCCTGGGAGTGGCGCAAACG G [2157672] 2157633 28 96.4 32 ...........................C ATCATTCGCCCGAGACCCATCAGCCCGATACG G [2157611] 2157572 28 100.0 32 ............................ TAATCGTCGGCCAGCTGCTGCGCCTTCTCGCT G [2157551] 2157511 28 100.0 32 ............................ GCCACCTGCATTCGTGGCCACGCACTCGCTGG G [2157490] 2157450 28 100.0 32 ............................ TGCGATTCCTGCTGTCGTTGCTAGTCCTGGGG G [2157429] 2157389 28 100.0 32 ............................ TAATCGTCGGCCAGCTGCTGCGCCTTCTCGCT G [2157368] 2157328 28 100.0 32 ............................ GCCACCTGCATTCGTGGCCACGCACTCGCTGG G [2157307] 2157267 28 100.0 32 ............................ TGCGATTCCTGCTGTCGTTGCTAGTCCTGGGG G [2157246] 2157206 27 96.4 32 ........-................... ACGCGGATCTTGCCGACGAGGCCGGCGTCGGT G [2157186] 2157146 28 100.0 33 ............................ TCGGCCAGGCCGGCCGAGACGACCATCTGACGC G [2157125] 2157084 28 100.0 32 ............................ GTGTCGGCCGGGAAGTGATGCTGAGTCGGTGC 2157024 28 96.4 32 ...........................T GTTGTGGCGATCATGACGTCGGCGGTCGGTGA G [2157002] 2156963 28 100.0 32 ............................ GGCCCGAGCGGCGCCGCCATCGTGCCTGGCGG G [2156942] 2156902 28 96.4 32 ...........................C CCTGTCTGATGCGGACGTGTCGCGGATTGCTG G [2156882] 2156841 28 96.4 32 ...........................T CACAATCCCGCCAACAGTTGCCGCATACGTCC G [2156821] 2156780 28 96.4 32 ...........................C GGCAAACTGATCTCCGGGCCGCAGGAGGTGAC 2156720 28 96.4 32 ...........................C GGCAAACTGATCTCCGGGCCGCAGGAGGTGAC G [2156698] 2156659 28 100.0 32 ............................ CACGGCATCTACGACGGCGAGTACACCGGGCC 2156599 28 96.4 32 ...........................C CCTCCCTCTATGTGGTCGGTAACGTCCGATGG G [2156579] 2156538 28 96.4 32 ...........................T AACACCCAGCCCGAAAATGGTAGTAGCCAGGT G [2156516] 2156477 28 96.4 32 ...........................C TGCATGGATTGGGAGCGTGACACGGTTACGCC G [2156455] 2156416 28 96.4 32 ...........................A AGAATCAGATCGCCCGAGAAGCCACGGCCCGC G [2156394] 2156355 28 96.4 32 ...........................T TCGTCGTCACCGGCGTCACGTCCAACTCGTCC G [2156333] 2156294 28 100.0 32 ............................ GAGTAGATGATGATTTTTCCTCCCCTGCCCAC G [2156273] 2156233 28 100.0 32 ............................ CTCACGCTGCGCAGCCGTGACCGCGTCCTTAC G [2156216] 2156172 28 96.4 32 ...........................C ATGCCGCTCCCGGATGCCGCCGGTGGCGTAGT 2156112 28 100.0 32 ............................ CCCCGCAAAATCGGGCTCTGGCTCAACCTGAT 2156052 28 100.0 32 ............................ GCCTCCGTCGCCACCGGATCGCCCCTCATCGG G [2156032] 2155991 28 100.0 32 ............................ CATCGCGTCAGCGATGCGCGGCAGTCTGCTTT 2155931 28 100.0 32 ............................ CGGCCAAGCGGTGGGCCAGAACTTTGCACGCG 2155871 27 96.4 32 ........-................... TCCTGGACCCACTCGGGTAGGCGCAGGTCGAG 2155812 28 96.4 32 ...........................C GGCGCCAGCTACAGCGTCGAGGTCGTCGCGGT G [2155790] 2155751 28 96.4 32 ...........................C ACCCCCTGGGACCTGACCGTCACGCGCCAGTC G [2155729] 2155690 28 96.4 32 ...........................T TCACCGCAATCTCGAACGCGGGCACAACATCC G [2155668] 2155629 28 96.4 32 ...........................C CTCGCGAAGGATGCCCAGCTGGTAGTCCTCGT G [2155609] 2155568 28 100.0 32 ............................ TACTGCCCGTTGGCATCCCGCGACAGGCGCAG G [2155547] 2155507 28 100.0 31 ............................ CCACATCGCCGGTAGCCTGCGTGCCCAGCGG G [2155487] 2155446 28 100.0 33 ............................ ACGGTGGCCCTGCCCGTCGGAATGTTCACGACC G [2155425] 2155384 28 100.0 32 ............................ TACGTCCGGCGCGTGAAGACGTCGTGGACTCG G [2155363] 2155323 28 100.0 31 ............................ CTGGGTTCATTGACCGGCCTACGCTTAACGC G [2155303] 2155262 28 96.4 32 ...........................C CAGTTTCCCGACACCTCCGGCTGCGAGCGCGG G [2155242] 2155201 28 92.9 57 .....G.....................T TCCAGCGCCTCGCGCGCCGTCAGCTTCCAGCGCCTCGCGCGCCGTCAGCTCCGTAAA G [2155179] 2155115 28 96.4 32 ...........................T CCGTTGAGCGTCGAGGTGGTCGAGGATGCGGG G [2155095] 2155054 28 96.4 32 ...........................C GTCTTCCCGGTGACCAACCCGAGCGGCTTCGC G [2155032] 2154993 28 100.0 32 ............................ GGCGGCAAGGACAACGCGCGGACCCTGGATCT 2154933 28 100.0 32 ............................ ATGTCGGTGCTCATCGCGTGATCTCCTCGTTG G [2154912] 2154872 28 96.4 32 ...........................C ACCTGGATCTGGACCGACACGCTGCCGACCGC G [2154850] 2154811 28 100.0 32 ............................ CCACCGTTGCGCCTACGTCGCAGAGTCTCATC G [2154791] 2154750 28 96.4 32 ...........................T GTTCATCATGGGAACTTCCTCTCTATCTGTAA G [2154728] 2154689 28 100.0 32 ............................ GCGTGGGACTGGATCCGCGACACCGCGACGGG G [2154668] 2154628 28 96.4 32 ...........................C GACGCAGCGCGGGCCCGACGCCAACCTCGACA G [2154606] 2154567 28 96.4 32 ...........................C AGCGAGTTCAGATCGCCCGACGAGTTCGCCAC G [2154545] 2154506 28 96.4 32 ...........................T CGGGAGACGTGATGCGGTTGATGACGGCCGGG G [2154486] 2154445 28 96.4 32 ...........................C AGCGCGATCGGCACCGTCCTGACGGTGACCGT G [2154423] 2154384 28 92.9 32 ................T..........C TGGCTCTCGTTGTAGCGGGCCCAGGCTGCGAG G [2154362] 2154323 28 100.0 32 ............................ GAAATGCTGGAGGCCCAAGAAAGTGAATTGCC G [2154302] 2154262 28 100.0 32 ............................ GGCCGGCGCGCCTTCTCCTGGTCGCGCGGGCT G [2154241] 2154201 28 100.0 32 ............................ GTCGCCGAGCGGGAGCAGCGGATCGCCCGCAA G [2154180] 2154140 28 96.4 32 ...........................C CAGCACATCCACGCCGCCGCGAATCTGGGCAC G [2154120] 2154079 28 96.4 32 ...........................C TCGTCGTCCAGGACTCCATCGAGGCGGTGGCA 2154019 28 100.0 32 ............................ GGAGTGGGTTCGTCACCGCGGGCTCTGCCGAG G [2153998] 2153958 28 96.4 32 ...........................C AGCTGGGTTGCGTCGTCGTCCAGGAGGGCGCC G [2153936] 2153897 28 100.0 32 ............................ GGCAACTGGGCGCCGCACATCCATGGCGTGCC G [2153876] 2153836 28 100.0 31 ............................ CACCAACCTAGTTAGTCGCGGTCGATGAACC G [2153816] 2153775 28 100.0 32 ............................ CGGATGACGGCATTGATGGGCGTTGCGAAGAC G [2153755] 2153714 27 96.4 32 ........-................... TTCGATGGGGCCGAACTTGGTTTCGATGGTCA G [2153694] 2153654 28 100.0 32 ............................ CGCAGCCGCCGACGTCATCGTGATCAGACCGA G [2153634] 2153593 28 100.0 32 ............................ GCGGCCGCGTCCCGCGTGCAGACCGCGCAGCA G [2153572] 2153532 28 96.4 33 ...........................C GTCTGGCACGGATCACGCTATCTATCCCGAGGA G [2153510] 2153470 28 100.0 33 ............................ CTCACCTTCCGGGACGACGATGCCCGTCTCATC G [2153450] 2153408 28 89.3 0 ....................G.C....A | GA [2153383] ========== ====== ====== ====== ============================ ========================================================= ================== 153 28 98.2 32 GTGCTCCCCGCCAACGCGGGATGATCCG # Left flank : CGGGTGACGAGACTGAGTTGGATATCGATGTGATCCAGCTGTGGGATGACCGGGCTGGGGCGGTGGCGGCCGGTGTCTCGTACGGGGATGAGGTGGACTGGTGATCACGATCGTACTCAGCAAGGTTCCTGAGGGAATCCGGGGACACCTGACCAAGTGGCTCATGGAGGTGGCGCCGGGGGTGTTCGTCGGTCGGGTGAACCCCCGGGTGCGGGACGAACTATGGAAGATCACCTGTGACGGGATCGAGACCGGAACGGCGCTCATGGTGCTCTCGGCAAGAAATGAGCAGGGCTTCGAGGTGCGCAATGTCGGCCATCGATGGGAGCCGGTCGACCTGGACGGGATGGTGCTGTTGCGGAGGCCGCCGGCAAACGACATCACGGGGCCTACGGTTCGAACCGTGATCCCGAAGGCGGCGAGGTACCGCTACCTGCGAAGCAGGACGCAAACCGACTGAGAATGATGCGGATGGTGGACTAAGGTCCTTGTCAGCAAGT # Right flank : GTGGAGCGTCGTGAACGGCATCGCGGTCTGACTGCGAGGAGGTCTTGACAGGCCGCTGATCGCTCAAAGGTCCTGAGCCGCTGAGAGGGGAGCATCTCCCTGCTGCGGTGCGAGTGGTCTCCGGAGCCGGAGGGATTCCGAGAAGTACCGTATGGCCCCAGACTGACGATCTGAACCTCAGCGCGACTCCCTCGCCTGCCGCCAGTCCCGCCACCCACCTACCATGCGCCTGCGCTAGAGCCCGCGCAGCGTGTCGTACAGGACCTCGGGAACTGAGTCGAGAGCAACGTCAAGCAAGTACTCGATGGCGTTGGCTACGGGCGACTGGTCGATCTTGAGCAGGGCCGTCCACTCGACCGGCTGATATCGGGCGAGCATGGATAACGAGTGCAAGATCGCCCACCAGACGAGGAGCGGGTGCATCGTCTTCGCCTGGCCGCCGATCGACGGCATCAGAACTGGAGTGTTGCGGTACCTGCGTAGGGGAATGCCCGGATTGA # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCAACGCGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [62-55] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2224191-2223452 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060789.1 Tessaracoccus defluvii strain JCM 17540 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 2224190 37 100.0 35 ..................................... GACTGAGGACGAGAGCGGATGACCCTGCCCTTGTT 2224118 37 100.0 33 ..................................... AGGGCTCGGGGCTCGGTTCCTGTGAAGGTTCCG 2224048 37 100.0 35 ..................................... TTGTGCTGGCTGTAGTACGCCTCTGCCTCGCCCTT 2223976 37 100.0 30 ..................................... TTCGCAACATCGCATCCTGCAGGTAGATCT 2223909 37 100.0 35 ..................................... CCCTTTCGTGGACGTATGGACTGACACGGTCGTGT 2223837 37 100.0 34 ..................................... TCAGCTTGTTCATGTTTATCTCTTTTTCTCCGAT 2223766 37 100.0 32 ..................................... GTCGGCGACACCTGCAACCATTGATTCTGGTA 2223697 37 100.0 33 ..................................... ACACGACCGTCCCACCCGAAGGCGTGACGCCCG 2223627 37 97.3 33 ................G.................... GTTGAGGACCCGCAGGTGCCGAAGAGCCCGACG 2223557 37 100.0 33 ..................................... AGCGAATCTGGCACGCTCCCGCCGTACCGACGT 2223487 36 83.8 0 .....................G........G-..GCG | ========== ====== ====== ====== ===================================== =================================== ================== 11 37 98.3 33 GTGCGAAAGCACCTCGCACGAAAGAGTGCATAGAAAC # Left flank : CCTCCAGACGCAACCGTCCAGCGATCTGGCGTGGTGTTCGGGATCGTTTCAGGTCGCCCAGCACGCGGGCCCGCAGTACCGGGTCGGCATCGATTTTGCGGGTCTGGGGGCGTCGGCGGCGGCGCTGGGCCTCGACGTCGGCTCGGACCACGCGGTAGCCGCAGGTCTTGGTGGCGTTACGACGGACTTCACGGCTGATGACGGACGGGGCCCGGTCAAGGTGGACCGCGATCCGTCGGATACCCCAGCCGGCCTTCAGACCTGTGGAGATCTCGGCCCTGTCGTGGGCGGTCAGTGGTCGTCGTTGCGTCACGCCGGAGAACCTCTCATCAACCTGCAGTGTTGCTTCCACGGTATGACACTGCCGTCGGATCTGCATGCCATTGACAAGGCCTTTCACCGTCACGCCACACCGGCTGCAGCGTTTGGCGCGGCGCAGGAGACGTGGTCTGCTTCGGGCTGGTATCGTCCGTTGTCAGCTGGCCAGCTGCAAGGCCGGG # Right flank : CTTGGGTTCGGTGGTCTCAGCGACGGGCGGTGCGAACGCTCCCTCACCACAGAGTGCGCTGCCGCGGCCGGGAAACACCATCTCGTCGCGGAAGGGGGCGTGATCACCGAGCCGGAGATTGGCAGGGCGGAGACCTCCTCGGGACTCCGCCCTGACGGTCTCAGTCGTAGTCAAGCAGGGTGGCGGGCCACCGGGAGTGCCCACAGGACGTCGTCGAAATCGAAGGCGCCGAAGTGCAGCCGTGGCTGTGGACGTGCCAGGGCGTGGTCACGAGCTTGTGTGTGCACGGCGGCCGCGTCGGGGTCGGTGCAGAGATCGGCCTTGTCCTGCGCCACCTGCGCCGCAAGAAGACCCAGCCAATCGTCTGCGTCCCCGATCTTCGCGAGCAGCGTGTACCTCGCCGCGGAGGGGGCCGCCTGAGCCAGGACCCACTGGGTCAGTGCCCTCTCCACTGCGCTCGGGAAACATCCATCATCACGCTCGGAGAAGGAACGCGCGCG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGAAAGCACCTCGCACGAAAGAGTGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.50,-6.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 2229169-2227845 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060789.1 Tessaracoccus defluvii strain JCM 17540 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================================= ================== 2229168 37 100.0 37 ..................................... AACGCCGAGCTCCTGGGCGATCCGTTCGAGGATCTCA 2229094 37 100.0 34 ..................................... ACCACAGAACTTCGGTCACCCGTTGTGGTGTGAG 2229023 37 100.0 37 ..................................... TTTTGGCCAGCCTTACAGACCGGCACAATTGCCACGT 2228949 37 100.0 38 ..................................... CTGCCGCTGACCGGCATCGGTCACTCGCTCGTCGCACG 2228874 37 100.0 29 ..................................... GGGGGGTCCGTCGGCGTCGGAGTCGGCTT 2228808 37 100.0 36 ..................................... ATCAGACCGATGATCTCAGCCGTACGAATGCGCTCT 2228735 37 100.0 35 ..................................... TCCTCCGTACCCTCGTCCTCAGGGGCCTCGATCAC 2228663 37 100.0 33 ..................................... CGGACATGGTGAGAAGAGCGTCTTTTAGTAGTT 2228593 37 100.0 40 ..................................... TCCGCGTGGCTTTCGTACACCGCAACGGTGTGGTATACGA 2228516 37 97.3 34 ..............................C...... CCTCTTTCGCTGCGTCCTACGCCAGTGGCCGCCT 2228445 37 100.0 41 ..................................... GATCTGGAAGTCGACGCCGTAACGCTGGTTGTCGATCAGCG 2228367 37 100.0 33 ..................................... CATCGTGGGCTCGAGCTCGACCGGAAACTGCTC 2228297 37 97.3 39 .......................C............. GCCGGGCGCGGTTGCTGTCATTGGCGCCCTCGAGCGCCG 2228221 37 100.0 32 ..................................... CGCCTTACGGGCATTGCTGTCCAGAATCCGAT 2228152 37 97.3 40 ...........G......................... GATCACAGTCTCTCCTTGAGTGCGTCGCGGTACTCGTCCC 2228075 37 97.3 32 ....................G................ AACATCTCCTCCAGGTCGGCATCCCAGTTGGC 2228006 37 91.9 87 .A........................C......G... TTGGGCTCGAGCAGCGCCTCGTTGGCTTGCGGTGGTGCGAGAGAGTGCATGGAAGCGTGACGGTCTGCTGGTCCTTGGTTGCATCGA C,C [2227997,2228001] 2227880 36 97.3 0 ......................-.............. | ========== ====== ====== ====== ===================================== ======================================================================================= ================== 18 37 98.8 39 GTGCGAAAGCACTCCGCACGAAAGAGTGCATAGAAAC # Left flank : TCGCGGGCCGCAAGAGCGTGCCCGGGCTGGTGGGCAGGGTGCGCTACGTGAGCGACGACGCCGGCGTGGCCCGCAGCATGTCTCTTCTGCTCGCGGTGGCCCAGTTCTCAGGGGTCGGGTCGTACACGGCGCGTGGGTTCGGCACTGTCAGCGTGCGCTCAGACGCACCGAGCGCCAGCCGTGCGGGATCTGGGCGCAGGACCCGCTCGGACACGCTGCGTCGCCCCGTAGCGGCGGGGGTCTGACGCGCCATGCCCGGGCTGCTGCGGATCGCGCCGTTCCATCGCGGTCGGCGACCTCCCGAATGCGGCGTTCAGGCGGGAGGCAGGACCCCCAGGACCCTGTGCGCGGAAGCGCCCGAGGGGCTTCGGATCTGCGTGCCCTTGACAAGGGTCTTCGCGCATGAGGGGCGCGTCGTGGTCCCCGTCGCGGGGTGTTCCGCGTCGAGTCTGCAAGGAGGTGGTATCGTCCGTTGTTAGTTGGCCGTCTCGAAGGCTGGG # Right flank : CAGCCGCCATCGGTCGTCGTCCAGTTGGTCGCCACGTGTGCCAAGGCACTTCGCACGACGAGCATCGCCTCCTCGCCACACAAGGGGCGAGGCGGGGCGGCGCGAGAGAGCGTGCTGAATCATCGAGTGAATCCGTGGGGTTCCCATGGGCGTCGCAATGAGGAACGCAGTGGGAAGGGCGGAGATGATGGGGGGTCGGGGATTCGCCGTCGATGAACTCAAGCCTGTCTGGGAACGGATCCTGCGCGACGACGTTGCCGATGGCACCTTGTCGTACGGCGTGCGGCGTTTTCGGGAGGAGGCCGACCGTTACCTGGATGAGCGGTCGGAGGCCCTCGATGCCGGCTCCTGGCAGCCGCATCCGCTTGTCGAGATGGTGCTCCCAGGCGCCAAGCGTCGGGTTCTCCACATTCCTGTGGTGGAGGACCGGATCGTCGCCCGGCGGGTCCTCGAGATGATCACCCCGCTGGTGGACCCGTCGCTCGGGCGGGCCAGCTTCG # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGAAAGCACTCCGCACGAAAGAGTGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.60,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 2283140-2285063 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060789.1 Tessaracoccus defluvii strain JCM 17540 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2283140 37 100.0 36 ..................................... GAACCCGACGTCGAGCCCCGCCTCGTTGGCTGTGCT 2283213 37 100.0 33 ..................................... ATGCCCGTTACGGCACAAGGTCGAGAAGGTATC 2283283 37 100.0 37 ..................................... CAGGATCACAGCGTCAGCGCGGTAGCCCAGCTTGTGG 2283357 37 100.0 36 ..................................... TGTATATCCGAAATCCACGGGCTCCGATACTTAGTG 2283430 37 100.0 38 ..................................... GTGACCTGTTGGTCGCCGTCGAGGACCTCGGCGATGAT 2283505 37 100.0 37 ..................................... TGGCCTGAACGGCCTGCTGCGGGGTGATCGTCGGCTG 2283579 37 100.0 36 ..................................... CAAAGACTCGTACCGCCTCCCCGTAGATTGCAGACA 2283652 37 100.0 29 ..................................... CGCCAAGCGGCACGCAAGACGACAAAATT 2283718 37 100.0 39 ..................................... CTACCCCACCGAGACTGACTCACGTCCGCTTGAAGGGTG 2283794 37 100.0 32 ..................................... TACATCCTCTCGTCGGACAACTTCACCCAGGA 2283863 37 100.0 34 ..................................... TAGTCCTGCCAAGGCGGTCAGCGTAATGGCGGAC 2283934 37 100.0 33 ..................................... CGAACAGCTCCACCCTCTCCTCCGGCTCAGGGA 2284004 37 100.0 37 ..................................... AGGCCGGCATCCCGTGGACTGTCATTTGAGCAGCCCG 2284078 37 100.0 35 ..................................... AAGTGACCAGGTGGTCCAGCGAGCATGCGAGGCCT 2284150 37 100.0 31 ..................................... CTAGCACGTCGGCAGGAGTGGAGCACTGGGG 2284218 37 100.0 37 ..................................... CCATCCGACATCGATGAGACTGCAGGTAGTGCTGAAG 2284292 37 97.3 39 ......................A.............. GCGTCCGGCTTTGCCGTAGGTCAGGTTCAATTCGGACCC 2284368 37 100.0 40 ..................................... CCCGGCGGGCGTGTAGACGTCGACTCGGATGGACGTGCTG 2284445 37 100.0 32 ..................................... GGTAGCGGGGGTAACCCTCGACCTCGACGGTC 2284514 37 100.0 37 ..................................... CAGCGGATACCCTTCAGGATCTGTGCGTTGGCCATGG 2284588 37 100.0 34 ..................................... GCTTGCGCAGTGCCTCCTCAGCCTGCCGGCCGGT 2284659 37 100.0 32 ..................................... GAATTCAGCCTGACGGCGGTCGGATGAGAGCT 2284728 37 97.3 41 A.................................... CGGTAGCGCTTGCAGCTCACGCGGGTGTTGACCGCGATGAG 2284806 37 100.0 39 ..................................... TTGGGCTCGTTGGCGAGGCGGCCGATGAGGGTTCCGGTG 2284882 37 97.3 32 ................A.................... GGTCGGGTCTTCTCCAGGAGTGACGCTTAGTC 2284951 37 100.0 40 ..................................... GATCGGGGCGAAATTGAACAGCCGAAACAGCACAGCTGCG 2285028 36 86.5 0 .....................AA.-.....C..G... | ========== ====== ====== ====== ===================================== ========================================= ================== 27 37 99.2 36 GTCGGAACCGACTACCGCGAATGCAGCGGATTGAAAC # Left flank : TGGAAACGCTGTACGACCGTACGGGCGACTGCGAAGACAGCACCATCCTGACCGCGGCCCTGCTCCGGCGGCTCGGCCACGGTGTGGTGATACTCCTCATGCCCGATCACGCGGCCATCGGCGTGGCCGCGCCACCCGGCATCCAGGGAGACTTCGTGACGTGGAACGGGACCCGCTACTTCTATGCTGAGACAACCGCCGAAGGTTGGCGGATCGGAGACATGCCGGCGCGGTACACGAGCGCCGACGCGGAGGTTGTGCCCATCCCGGCGCGGTCAGCGGAACTCGGAGGAGGGCTGTTCGACGGCGACGGAGACCACGGCGGCAGGTGAGGGGGGTGTAACCAGGATGTGGGAGAGGGGCCTCAGGTGTGCAGGGGGTCTGACAAGGCCGAACACCGCCCAGCGGCGCTCCACTGGCCCCGCCGACCGTCGATGCCCAGAGCAGGTGTGCAAACGGCTCACGTACCCCCTTGTCACGACGGCGTGTCGGAGGGTAGG # Right flank : CACAACACTCACGTTGTTGCCTTCCATGTCAAAGAACCACGTCGAGAACGAATACTGCGATAACAGCGGGTTGGCGCTCACCGCCAGGCGCCACTTCGAATCGACGCGACAAGTGGGCATCTGTGTCAATGCAGAGAGGGGAGGTGGCCGAAATGGGACTGGAGACATTCAGCTTCGACGCATTGTCTCGCGCCTGGGAGGAGGTGCAGGAGAACGACGCCGAGGACGGTGTCATGAGCGCCGGTGTCGAGCGCTTCGGGCGCGACGCGGAGGATCGACTCAAGGAGCTTCAGGAGTTGCTGGTCACAGGGGCCTATGTCCCCCGCGACCTTGCCGAAGTCCGAATTCCGAAGTCCGGCGGTGAGCGGGTCCTCAACATCCCCGCTGTGCAGGACCGCGTCGTGGAACGCTGCATTCTCGACGCAGTCACTCCCCTCGTCGATCCCCACCTGGGCTCAGCCTCGTACGCCTACCGTCCGGGCCTCGGAGTGGCCGACGCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAACCGACTACCGCGAATGCAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : NA // Array 5 2297628-2298171 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060789.1 Tessaracoccus defluvii strain JCM 17540 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2297628 37 100.0 34 ..................................... TCATCCGTGATCTCAGCCGTAGCAGTGGCGGTGG 2297699 37 100.0 37 ..................................... GCAGGGCCACTCGACGCCGTACTCGCCGTACTCTCCG 2297773 37 100.0 34 ..................................... CTGGACCCTCGATGGGGTCGGGGGTGGGCTCCTC 2297844 37 100.0 34 ..................................... TCGTCGAGAAGGTTGGCCACCCTGATGGCCTCCC 2297915 37 100.0 35 ..................................... TGAAGTAGTTCACCCCCACCTCCTCGAACGTGGCG 2297987 37 100.0 34 ..................................... GAAACCACTTGGCCACCAAGTTTTAAGGGATGGG 2298058 37 100.0 38 ..................................... AGCCGCACCGGCGAGTGCCTCGTAGATCTGCGCGCCGT 2298133 37 81.1 0 ....................G.........G.ATTTG | A,T [2298138,2298162] ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 97.6 35 GTCGGAAACGACTACCGCGACAACAGCGGATTGAAAC # Left flank : CTCCGATCAGCGCAACTGGCGTGGAACAGGTACAGCCCTGGCCCGCCAATACCGCTGGATCGCGCGATCCTCGACGCGGTCATGCCCGTAGACCTGGAGCTGACCACCGGCACGATCCAGATCGGGGCCCGGATCCAGCGGGGCTGCCTCGGGTGGGTCACGTATCGATGCGCGGACCGCGTTGTGTCAGCCCACGTCGCTCCGCTCTTCGGTCTCCTCCCCTACAGTGGAGTCGGATCCCACCGGATCAAGGGTCTCGGGCAGGTTGTGGTGTCGGCCTCGGAGCCTGCTGCCGCGTCTCGCCAAGCCGCGGCCCAGTGAACCGGCGCCGCAGGAGGGGGTGCTGGAACTGTGTCCAGATGCGCCTCAGGTGTGCAGGCACCTGACAAGGCCAAATGCCCACTTCCGGCGCGATGCGGCCCAAAGCCTCACCTCCCGGCACCCCTGGTGTGCGAACACGATCCAAGAGCCCTTGTCACGACGGCGTGCCGGAGGGTAGG # Right flank : GACGCTGTGGGAGCCGGTGGTTCGTGCGGTCCAGCGCCGGGGTTGGTGCGGGTGAGCGCCGGTGGTGACGTGGCTGGGAGCCACCACCGGCGCTGACCCTGCGGGGTTAGGTCTGCGCGGCGGTGTGCTCGCGCATGTTGTAGGTGCCGGTCTCGATCCAGAGTGTGTTGTGGACGATGCGGTCCATGATGGCGTCGGCGTGGACGCCGGCGCCGAGGCGCTGGTGCCAGTCCTTCTGCTGATACTGGGTGCAGAATACGGTTGAGGTTTCGCCATAGCGGCGTTCCATCAGTTCCAGCAGCATCCCTCGCATCGATTCGGTGGGACGATCCAGAAGCCATTCATCGATCACCAGCAGCGTGAAGGCAGCGTACTTGCGGAGGAACTTCCCGGCTCCACCGGTCTGTTCCTGGGCCGCGGTCCAGGCCTCCTCGAGGTCGGGCATCCGCATGTAATGGGCCCGGATCCGGTGTTCGCAGGCCCGTTTCGCCAGCGCGCAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAACGACTACCGCGACAACAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA //