Array 1 1190457-1191115 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKSC010000001.1 Holdemania massiliensis isolate MGYG-HGUT-01430, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 1190457 35 97.1 35 .C................................. GATAATCTTTTGCTCACTGCTCAAGTCCATGCCAC 1190527 35 100.0 34 ................................... TATGTATTTCCGCAGCGCTTCCAGGTCTGGCTTT 1190596 35 100.0 36 ................................... AGACCACAAGTTGCGCTGTTGCGCTACCGTGGTTAA 1190667 35 100.0 34 ................................... CACATTACCATCTATTGAAATTCCCATAGTTTCA 1190736 35 100.0 34 ................................... CTGCAATGCGTCACTAGTAAATCCTGCTGATTCA 1190805 35 100.0 34 ................................... TCATATAAATCTCCTTTCTGAGGATATAGGATAG 1190874 35 100.0 34 ................................... GCGGTCACACCAACCTGTGACTCTAACGTATCGG 1190943 35 97.1 33 ................A.................. CTCCACTACCTGTTTTTACGGCTGGAAGGCTCC 1191011 35 100.0 35 ................................... AGAATAAATCCCTTCCGCAGCTCATTCCGGCGATA 1191081 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ==================================== ================== 10 35 99.4 34 GTCGCATCGCTCACAGGCGGTGCGTGGATTGAAAT # Left flank : GGCCTGTAAACCGAATGAAAAAACGGCTAAAACGCTGATCAATTCTATAATGGCACAAATCCAGATCGCTCCCTCAAACCAGCATATACAGGCCGTTAGGGGAGCCAGAGGACTCAGTATCAACAGCTTTTTTAACCGTACTGGCCGGCGGCAAAGCCAAGCTGAACTCAACCATACAGAACAGTTCAAAATCGTTCCCAATATTACGGTTACTTCCACATAACTGTTCACGCTTTTCTCCTTTCTCTACGTTCTATGATAGAAAAAGAGCTGAGCATTTTTTGTCGTTTTGCCCACCTGGTCTGTGAAAGTTCATTTCAGATAGTTCCGAATAATATATCAGAGATTTCTAGCGCGAACCTAAGGTAAACATAGAATCCCTGGGAGGTTCGCACCGGAAATATGTGAAAAATAAGGAAAGAGTTGCAAGTAGATTGGTTATTCGCTATTATAGAAGTAAGATAAGAATCACCTAAATATCTATTAGTTTCTTATTCGCT # Right flank : TGGCTTTGACCTCGATCCCGATAAATCTGCCAGCTATGTCGCATCGCTCACACTACAAGGATAAAATATACAGAAAAAGAGGACTGATCATCCTCTTTTTCTGTTTGTATTTCAACACGCTGATTAAATATTTAAAAATGATAAATCTAGCTTAGTTATATAAACCTCCGTAAATGACATAGGCAGCACAATTAGAATCACACCTCTTGAATCAAAATGAATCTGTATTATCTTTTAATAGAACTTCCTTTCCCCATTTCGTGTTTTGTAATGCTTTAAATATCAGCCAGCCTAACATACCTCCTGCCACATTCATAATCAAATCATCAATATCTGCAGAACGGCCAATGAAATACTGCAAAACTTCTATGAATAAAGAACTTCCTGCAAGGCTTATCAGGCAGATTCCTGCTTTGCGGCATTGAGGTAAACATACAGGAATTAAAAAGCCCAGAGGAACAAACATTGCAATATTCAATAATAATTGCTCGATCATTCGC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCGCTCACAGGCGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1236641-1237076 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKSC010000001.1 Holdemania massiliensis isolate MGYG-HGUT-01430, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1236641 33 100.0 35 ................................. GCTGACGATCCAGAGAGCTTTGTGATCGATTCGCC 1236709 33 100.0 34 ................................. CTCTGAGTGTATCATCTTTTTCTATCACTTCTTG 1236776 33 100.0 35 ................................. GTCTAATGTCGCCCCATCGTAGGCGTACATAAAAT 1236844 33 100.0 33 ................................. ATTAATCTGATACAAAGTAGGATAACCAGTACC 1236910 33 100.0 33 ................................. TTGATCATGTCCTGTTCGGTGTTATTGCCTTTG 1236976 33 100.0 35 ................................. CATTAAATACAGCTCCACCTTCGTCGAGCGTAACC 1237044 33 90.9 0 ...............A..............T.G | ========== ====== ====== ====== ================================= =================================== ================== 7 33 98.7 34 GTCGCATCGCTCATGCGGTGCGTGGATTGAAAT # Left flank : AGATCAAGAATAAAAGAGCGTTTCGCGCTTATGCTGAAAATAAAAGGAGGGAATCCCCAATGCAAAAAAATCTGACTACACTCTGCAAGTTAGCTGCCATTCTGATCGTGATCGCCTCTGTCTTCTATTTTTCTTCTGGAGCGCTGAACCAAACACCAAACTTAAATGTTTCCAATATGCCATTGTCACAAATCTTAATGCCTAATTGATTATAATTATGATGACCTTGGATATAATGAAAACATTTAGGTTTCTCTTGAACTAATTTAATTATAGAATACTACTTTATGAGGAATATTAGGGACGATTTTCCATCCTGATAATTCCTCTTTTTCTTTGTATTATGATTCTGGTGCGAACCTGAAGTGAACATAAAATCCCAGGGAGGTTCGCACCGGAATTATGTGAAATATGAGGAAATTGTTGCAAGTAAGTGGAGGATTCGATATTATAAAAGTAAGATAAGAATCATCTATACATCTTTAAGTTTCTTATCAACT # Right flank : GAAAAACAACTTACATATATTCTCCTAGAATCAATCGTCGATTAGGATAGTCAAGTCGCCAGCTGCGCCTTGCTAAAAGATCCGCACCGCACAATCCTGCAACTTCCTGTTTCGTGACAGGATATAACACTCTATTCAATACCGGAATATGATAAAGTATTATCTCTGCCGCGCCGAATGTTAAGCGTAGAGAATCAAGCCGTTTTGCCGGAACTTCTGTCACGCCATCAACCCCCATCATCGTTTCCAAATCCATGGGCATTGTGTCTGGCAAACTCTGATAAAGCAAAGATCCGCCACTGGTATCCGTATTCCCGCTGTCAAAACCCCACAGCATAATCTGATCATTTGTTTGGACTCGCAGAACTGGCATATTATCCCAGCCCACAAACTCATGGATTTCACTTTTCTCGGGTATTGAAGGCCTGACCCTCAATTGTTTCTGAGTTTCATCCCATTGCCAACAGGCATGTTGAAGAACATCCCAACCTAATAATCCA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCGCTCATGCGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1415120-1415489 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKSC010000001.1 Holdemania massiliensis isolate MGYG-HGUT-01430, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1415120 33 100.0 33 ................................. CTGAATCTCCCGTTAGTGGAGATCCGCAGCAGG 1415186 33 100.0 34 ................................. ACTAGCCCCTGGTTTTGTTACTAATTTGCCACCG 1415253 33 100.0 34 ................................. AGTGCAGGCCGATCAAGACGGTTAAGTATAATAG 1415320 33 100.0 34 ................................. AAGTAATGGCGGTTTTTGCGAATTTTATGGTGGC 1415387 33 87.9 36 ........A.G..A.T................. AGTGTAAAGAGTGTGGCAACATCAGCACTGAAGTTA 1415456 33 75.8 0 ..T..........A...T.T.T..C...A.G.. | T [1415471] ========== ====== ====== ====== ================================= ==================================== ================== 6 33 93.9 34 GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Left flank : GTTCAGCAATTTGAAAACAATCTGATTTATCCCCGAGTTGTAGGAAACTCAGTAGGCCTTCCAGGAATCTGGGTTCTGCTTTCCATCGTGGTGTTCGGCGGTTTATTGGGATTATTTGGCATGTTAATTGCTGTTCCAGCAACAGCTGTACTGTACACTTTATTAGGTGAATTCGTTAATAGCCGGATGCGGAAAAAAGGACAGGTTCTAGATGAGTCAGGCTTACTAAGTGTGAAGTCAAAGGTAAAAGAAGAAGCTTCACCTACTGCTGAGGATGAAATCAATTAAACTTTAAATATTAGAATTTCACTGCAAGGCTTTTAAAAGTCTTGCTTTTTTATACTTTAATCCAGTGCGAACCTGAGGTGAACATGAAATCCCTAGGAGGTTCGCACCGGAAATATGTGAAAAATGAAGAAAGTATTGTAAGTACAACGATGTTTAGTTATGATAGAGATACGATAAGAATCATATGGGTACCTTTTAGTTTCTTATTAACT # Right flank : TTGTTCCATTTGTCTTTGTTAATTTACAAATCAGTATTGCTTAGCAGCTAACCAGTTCTTATCTCATTCAAGGATATACATCGAAAAAAGCCTGTCTTCATTTTAATATGAAAACAGGCTTTGCTACTTTTTCTAACTAATCTACATCTTGGTCTGCAACATTCCAAGGACGAATTACACACCCCTCCGATGTCAGTTCGGCAACACAGACCTTCGCAGAATGATCTTGATCACTGACAACAAAGGCAAATTTGATATTGGTTCCAACACCCCAGCGGCCATCTTTATCTACACAGATTAAGGAAATCGCCTCAGCTTGTCCACGCTTACGAATCAACTTTTGGGTAAATTCTGCAACTAAAGTTGAGGCCGCCTCTTGGGGCTCCTGCCCCTGCTGCATTCTACGCACTACTTCATAGCTCAGACAGCCTTTCATAATTTCCTCGCCAACCCCCGTCGCTGCCGCGGCTCCAATATCGCTGTCTGCATAGAAACCACTT # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 1451892-1451055 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKSC010000001.1 Holdemania massiliensis isolate MGYG-HGUT-01430, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1451891 33 100.0 34 ................................. GTCACTAGGGATTAAAGATTACAACAAAATTTGT 1451824 33 100.0 32 ................................. AATTCAGTATGCAGCTTATCAATACCGCAAAA 1451759 33 100.0 34 ................................. TTTGCAACTTCTTCATTTTCACAGATCAGTGATG 1451692 33 100.0 33 ................................. ACCTCCTGTCTCTATGAATACATAATACGTCAC 1451626 33 100.0 35 ................................. TACAACCAGCCGATCACATTTTCTCGCAATGGTGC 1451558 33 100.0 33 ................................. AGGGATCTGCGGTCGGTAAGCTGCTGGCTTATA 1451492 33 100.0 36 ................................. ATGAAACAAGACATACCTTCCGAACACGCCTAGATA 1451423 33 100.0 34 ................................. GTCATGCAGATCTAATGCAGAGGTCTTTGCGATC 1451356 33 100.0 35 ................................. AGTTGGTTCAGGCGTTTGTATAATAATAATAGGCT 1451288 33 100.0 34 ................................. CATAGTAAATCCTTTATATATTTCTTACACTCTG 1451221 33 97.0 34 ..........A...................... TTTGAATTTAAGGCAAACTCTTATGACGATGATA 1451154 33 100.0 34 ................................. CACTACTCAGATCTCCAGATGGAGGGCTATAAAA 1451087 33 93.9 0 .............................GG.. | ========== ====== ====== ====== ================================= ==================================== ================== 13 33 99.3 34 GTCGCATCACGCAAGTGGTGCGTGGATTGAAAT # Left flank : GTGATTTGGATGCCTATCCACCTTTTTTATGGAAGTAGGCAAATTTATGTTAGTGTTGATTACTTATGATGTGAATACACAGACAAAAGCAGGAAGAACAAGACTGCGTAAAGTGGCAAAACAATGTGTAAACTATGGTCAAAGAGTACAGAATTCTGTGTTTGAATGTTCAGTGGATAATGCTAAATTAATTGAAATACAACATATACTGGAGGGCTTGATTGATAAGGAAGTAGATAGTTTAAGATTTTATATTCTTGGAAACAAATATAAAAATAAGGTTATTCATATTGGTGCCAGACCTAGTTTTGATGTAAATGATCCGTTGATTATTTAAGTGGTAGTTTATAAGGTGCGAACCAGAAGTGAACATAAATTCTCTGGGAGGTTCGCACCAGAAATTTGGGTGAAAAAGAATAATATTTAACAAGTGCCTACAAAGAACAGAAAGTAAAGCGGAAATAAGAATCATATTTCAATAGTCTTGTTTCTTATTTGCT # Right flank : AACTGCTAAATTTTGGATAACCTTAGAATCATAGGGAAGATATGTTTCTTATTTGTAAACAGAAAACTTAATTGCGGAAAAAACTGTGATATACTAAGAACAAAGGAGTGATCCCAATGCAAGCAAAAAATGCACCACGTTATCAACAAATTGCAGCGGATATTGCTGCAAAAATTGCGGGTGGTGAATATAAAATTGGGGATAAAATTTTTGCGCGTTCTTCGTTAGCTTCACAATATCATGTTTCAAGCGAAACCGCCCGACGTGCCATCTGCGTACTTTGTGATATGAAAATTGTTGAATCCATACAAGGGATAGGCGTTGTGATTCAATCTCCAGAAAATGCCGTAATGTATGTCAGACAATTTGATGAAGAGTATACGATATCGGCAATGAAAGAAGGGTTAATTGAATCACTGAATGAACAAAATTTAAGAAACAACGAAATAAAAAATCAGCTCGAAAGTTTGCTGGACACAGTTACGCGATTTAAGGCCTTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCACGCAAGTGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.20,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 5 1461164-1460188 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKSC010000001.1 Holdemania massiliensis isolate MGYG-HGUT-01430, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1461163 33 100.0 33 ................................. ATCTTTACCACGAGATTCCAAAATAATACATAT 1461097 33 100.0 34 ................................. TAGTGTATTAGCTATATTTTTGATTAATATTTTC 1461030 33 100.0 34 ................................. AAACAGCCGGCGCTGACCTATGTCTGTACCATTC 1460963 33 100.0 34 ................................. CCCAAAGATTCGCGATGCTCTGTTTGGAGAAATC 1460896 33 100.0 34 ................................. AGCGAGAGGGTTTTTTACCTCATAATCTGCGATA 1460829 33 100.0 36 ................................. AGCACTATTGCTTTCAAATGTCACTGTAGGGAATAC 1460760 33 100.0 34 ................................. CTGGGTTTTCTGTATGCGATGATGCCGAGCTTAA 1460693 33 100.0 36 ................................. TGATAAACAATCAGGGTATCGTGATCCACGACACCC 1460624 33 100.0 35 ................................. TGGACATGCTGCCAGGGCGACAAAAAGATGGATAC 1460556 33 100.0 33 ................................. GCGCTTTTGCTGAACGCTATCCGGAAGCGTATG 1460490 33 100.0 34 ................................. AGTTACCATATTGCAATGATTTATTGTTGATTAC 1460423 33 100.0 34 ................................. AAAGTCTTTGGAAATATCTGCTGAATCAGCATAA 1460356 33 100.0 35 ................................. TCTGGGCAATGGCGAACAGGATATTGTCGGTTTTG 1460288 33 100.0 35 ................................. GGCTCGGTGTATATGGCTCAGACAGTTACACAGGC 1460220 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 15 33 100.0 34 GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Left flank : GAAAATAATTTCCGATTCATTATGCGGTCAAATCTGGGCTGGTAAAGCTAGTGTTGTATTTTATTGGTCACTCATAGCTTATCGATGTGAATGGCGATATGGAATACGTGCACATCGTGTAGCTTTAATTGATGTTGGACATGTCGGTCAGAATCTGTATTTGGCCTGTGCAGCTTTAAATTTGGGAGCGTGTGGAATCGCGGCATTTGATGATGCTATTTGTAGTAAGCTTTTTGAGTTAGATGGTAATGAAGAATTTGTTGTTTATACAGCACCAGTTGGCACTGTCAATTCCGATGATATAGAAAAAGAAAAAGAATTTTATCGTTTTGTAGAAGAAGAGGGATTATAAGTGCGAACCTGAGGTGAACATGAAATCCTAGGGAGGTTCGCACCAGAAATATGTGAAAAATGAAGAAAGTATTGCAAGTATATCGATGTTTAGCTACGATAGAGATGCGATAAGAATCATATGAGTACTGTTTAGTTTCTTATTAACT # Right flank : GATCGTGGCCATAGCGTCAGAATCGTCCAAATTTTCACATTGCTTATGCGACATATCCACTGGAATTTGTAATTCATGCTTGTGATTTGCAGAGTATTCAATTACTTGTAAATGTAAAGAAAGGTAGAAATAATTAGAAAAAGAGGTATAATAAAACTATAGATAATTGTTGTCAGGAGGTGTGTATATGTTTTTAGCACACTGGAATGAATCAAAACAACAAGCACAGTCTTTGCAAAATCATAGTGAAAATGTAGCATGTTTAATGCAAGAAAATTGTTTTTCACTTGGTCTTTCTTCTACAGGGAAACTTATTGGTTTACTTCATGATGTTGGTAAAGCAAATCCGATTTTTCAAACATATATGCTAGAGAATCAAATCGAAAAAAAGGGAAAAATCAACCACGCTGCAGCCGGAGCGCAACTTTTAAAAGAGAAAATAATAGATGCGGAGATTTCGAACAAAGAGATTAATCCAAGCATTAATAAGCTGTTATTTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.20,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 1467823-1468859 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKSC010000001.1 Holdemania massiliensis isolate MGYG-HGUT-01430, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1467823 33 100.0 34 ................................. CCTTTTCTTTTTTGCCATAACTAGCGCTCCTCTC 1467890 33 100.0 33 ................................. TGTTCGGCCTCCTTGTATAATAGAGGCATAGTA 1467956 33 100.0 33 ................................. TTAAGCAGCCCGATCAATTTATCATCGACATCA 1468022 33 100.0 33 ................................. ATAACCCCTGACGTTAATGCGCCTAAAAATGCA 1468088 33 100.0 34 ................................. CTGTGCGTTCAGGATGTTACGCATCGAAGTCCGC 1468155 33 100.0 33 ................................. CATGTCTGACATATTCAGTCAACTCGTCCGTAC 1468221 33 100.0 35 ................................. TTGATCCAGGTCTTTGAATACGTCTTTTGAGCGCT 1468289 33 100.0 33 ................................. ATACGAGCCACACCGTCCCATTCCAACAGTTCA 1468355 33 100.0 33 ................................. CCCTCCAAGATTCCCCACATGCTTTCAATCTCG 1468421 33 100.0 34 ................................. TGTTTTCGATGGCCTGACGCTTTTTGCCCATGTC 1468488 33 100.0 35 ................................. GTCGTTCAGGACGCCGGCGTACTCCCGCAAGGCCC 1468556 33 100.0 34 ................................. GTTTCCACGTCCACAACGATTGGCGCCTTACCTC 1468623 33 100.0 34 ................................. ATGAAGACACTTCGCTGCACAGCGAGCGAAGATT 1468690 33 100.0 34 ................................. CGGCAACTTTTCGAGCGGATGAAAGGTGAGAAAA 1468757 33 100.0 34 ................................. ATTATCCTGATCCAGTGATATCTCATACAGTCTT 1468824 33 81.8 0 .............CA....C....A...T..T. | C,A,A [1468842,1468846,1468853] ========== ====== ====== ====== ================================= =================================== ================== 16 33 98.9 34 GTCGCATCGCTCATGCGGTGCGTGGATTGAAAT # Left flank : ATACACGTGATTTAGCATCTTATATTTCAGGGGCTGATGATTGTCAGCAATTAATTGAAAATCCACAGGCTTTATCGTCAGAAGAAAAACAGCTTCGGCAATTACGCGGACAATTATTACTTGATCAGCAGCCAGCTGCTGAAGGATACGCCGAGAGCGTTCAAAAGGAAATCAATTCATTTATCAAACAAGGATATATTGAAGAACTAGATGGTAAATTAAGCTTAACTAAGGATGGTAAAGGTGCTTTCTGGATCAGCTTATCAAATGAAGCTTATTACTGATTAATGAATAAGTAATGTGTAGGATAATTACGACTTAATTAATTACGGGAAATTTTAAATAATAATCGGTGCGAACCTGAGGTAAACATAGAATCCTTGGGAGGTTCGCACCAGAAACATGTGAAAAATGAAGATAATATTGCAAGTAACAGAATTATTCGCTATGATAATAATAAGTTAAGAATCATATGAACCTCTTTTAGTTTCTTATTTGCG # Right flank : TCAATTTTCGGCAAAAAAAGCTAAAAAAGAACCTTAAAAAACAAGGTTTAAAACAATTTTTCGATTGACCAATCAATACCGTAAATTGAAAATTAGATATTAAAAATCAAATTGCTGATCTATGATCGTAATCACCTAATAATTTTAATACAAACAAAGTATAAATTTCTAATTATCTTTTTATATTTTCTTAAATGCTCGTAAAGCCTTATTCTATGTGCTTTCGAGTATTTTTACTGTAGGAAGATACTTCACGTTTCTTTGCATATTTCCTCATGTCTTAGCTGTCAGAAGTGGTAAATAAGTAGTAAATTCATTTGTACTACTAAGCAACAAGACGCTCCTGTTGCTTCTCTTTATTCAAGCGTTTCATCTCTGACATTGCGGAATCAAATGTTGCGTGTGCGTAATAGTTCAGCGTCATGGCTATATTTGCATGCCCCATAATGTATTGTAATGCTTTTGGGTTCATTCCTGCATTTGCATAGTTGGTACAGAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCGCTCATGCGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //