Array 1 3649-9230 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMTM01000019.1 Flavobacterium succinicans strain DD5b FLB_contig000019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 3649 45 87.0 30 A.....-G..T.G.G............................... CGACACCAATAGACTTACAAACTGATTGTA C,A,A,A [3651,3653,3660,3663] 3728 46 100.0 29 .............................................. GCCATCAACATATTGATCTTTTATTGGTA 3803 46 100.0 29 .............................................. CAATAATGGCGAAGCCACAACCTCTAGAG 3878 46 100.0 29 .............................................. GCTTCGCTTTTCGTCCACAAGGTATAAAG 3953 46 100.0 30 .............................................. TATATCTTTTTCAATGACCGATACCGGCAA 4029 46 100.0 29 .............................................. GCTCTAGATTTGATTTAAACCATCAATAC 4104 46 100.0 30 .............................................. TCATGGTTCTCGCTCCATTTCTAACCTCTG 4180 46 100.0 29 .............................................. ATTGAATACTATAAAATCACAATCCTTGT 4255 46 100.0 29 .............................................. AAATCTGCTTCCTCAATTAATGAATTCAG 4330 46 100.0 30 .............................................. TGGAGCCGATCTAATAATTGATGCACTTCA 4406 46 100.0 30 .............................................. GAAGGGCCAAGTGGAAATAAATATACAATT 4482 46 100.0 30 .............................................. CGTATCTTTTAACCCTTCTTTTGCGTGTGG 4558 46 100.0 30 .............................................. AAAAACAGTTGAAGAAGCTATCACATTCAG 4634 46 100.0 30 .............................................. AGACGCTAAGAAAACCCAAACCAAAACGGG 4710 46 100.0 30 .............................................. CTCTAGCTTGGTCAAATTGGCTCTCTACTA 4786 46 100.0 29 .............................................. GGTGGATTACCAAAAACACTAGCTCGACA 4861 46 100.0 30 .............................................. AAGGATTCTTTATGGATGAAGACGAAGAGG 4937 46 100.0 30 .............................................. TTTTATGTAGTTCATCATATCATGTGGAAG 5013 46 100.0 30 .............................................. TAAAACTATTTTCATGTTATCATGATCTTG 5089 46 100.0 30 .............................................. AGTACAAAAGTTTTATAACAAAACCACACT 5165 46 100.0 29 .............................................. TGGAACTGTTGAACCTTTTACCCTTTACA 5240 46 100.0 30 .............................................. TAAACAATAATCCATTCTTTGTTTTGCTTA 5316 46 100.0 30 .............................................. AAATAAAAGCCAATAAGGATAGAATGGCTG 5392 46 100.0 30 .............................................. AAACAGCTTATAACAATCGCTACATTTCAG 5468 46 100.0 30 .............................................. TTCATAACCTATAGAATTTAATCGTTCTAC 5544 46 100.0 29 .............................................. TCAAGTAATTGTTTTGGTAAAACGATTTG 5619 46 100.0 30 .............................................. AAAAAACAAAAGGTATATGAAACACGGAAT 5695 46 100.0 30 .............................................. CTGGAACCGAGTTGGCCACATCCATCCAAC 5771 46 100.0 30 .............................................. AGCAGGCAAAAGCTTACTATCAGATACCGA 5847 46 100.0 30 .............................................. CTGGAACCGAGTTGGCCACATCCATCCAAC 5923 46 100.0 30 .............................................. TCGATAGAAAACACAATGTATGCGGTGGAA 5999 46 100.0 30 .............................................. TTGTAACGCTTGATTTAAATCATCGTCAGT 6075 46 100.0 30 .............................................. TCATCTGTAGTGATATATTCTTTTACTGAG 6151 46 100.0 29 .............................................. ACTCAATTATAGTTTTAAGTCCTCCTATA 6226 46 100.0 30 .............................................. CTGTGTGGCATTAATCATCATTTTGCCATT 6302 46 100.0 30 .............................................. TTCTGCCATCAACGACCTTGGAGCCAATGG 6378 46 100.0 30 .............................................. TTAAAAACATTAAGCCGTTTGTTACGGGTA 6454 46 100.0 30 .............................................. TTACTTAATTCGCATTAACGACACTACCGG 6530 46 100.0 30 .............................................. TCTTGCTGGGTGATTCCTTTTTGTTTTCTT 6606 46 100.0 30 .............................................. AGTTTTGATGCGTTGAAAGCGATTGTGATG 6682 46 100.0 30 .............................................. GGTTTGAATGATTTGAAAACTAAATACCAA 6758 46 100.0 30 .............................................. CCTGGTCCTTGTGGCAAAAGAAATCTACCA 6834 46 100.0 30 .............................................. CAATTCCGAAATCAATCGCAATTGTTCGTC 6910 46 100.0 30 .............................................. ATGAATTGCCTCCAGAACTAAGACCAGTTT 6986 46 100.0 29 .............................................. ATGCTTTCTTGCCATTACCTCCTTCGTCG 7061 46 100.0 30 .............................................. TTGAGTTGGTTATAATAATAAGTCTCTACT 7137 46 100.0 29 .............................................. TTATTGTCTTTAGGGTTGAATGTGGATGA 7212 46 100.0 30 .............................................. AAACAATTTATAAATCAAGCCTAATGCCTA 7288 46 100.0 30 .............................................. TGCTTCATCTGCCGAAGTAACTTCTCTCTT 7364 46 100.0 29 .............................................. TTCTATGAAAATAAATTGTTTCGCGGTCT 7439 46 100.0 30 .............................................. TTTATTGGTTTTAACATTTAACTCAATTGA 7515 46 100.0 29 .............................................. ACAATAGTAAACGGCAGTTATGTTGTATC 7590 46 100.0 29 .............................................. TTTATTATTGGTTCTACCATAAAGTTACG 7665 46 100.0 30 .............................................. GGCATGGTGGGATACAACTGTAAGCAATGA 7741 46 100.0 30 .............................................. AACTACTATGCAAACAAACAAGAAGAAAAA 7817 46 100.0 30 .............................................. AAGCTACGATAGGAGCAGGAGCGTTTGCCA 7893 46 100.0 30 .............................................. GAGCCTACGATGAGGAAACTTATACACTCT 7969 46 100.0 31 .............................................. TGAGGGACTAATAAATAACGAAATACCTATA 8046 46 100.0 30 .............................................. GGCATGGTGGGATACCACTGTAAGCAACGA 8122 46 100.0 29 .............................................. TTTTTAAATAATACGCCGTGCGAGTACGA 8197 46 100.0 30 .............................................. GATACGACTTACCAGCCTACGCGCCTTATG 8273 46 100.0 30 .............................................. TAACGAGCTTATCGGTAATATCGCAATGAC 8349 46 100.0 30 .............................................. CGAGCATTACCGCGAGATTACGCGCCGTAA 8425 46 100.0 30 .............................................. TTAATGTTATACCTCCATTGTCATCGGCAG 8501 46 100.0 30 .............................................. AAATAGACATAATATTTTCTTACGTTCTAA 8577 46 100.0 30 .............................................. GAGCGGTTGTACTTTCGGTAAGGTCGTTAT 8653 46 100.0 30 .............................................. AAATTCAGATGTTGTGGCAGCACCATATCC 8729 46 100.0 30 .............................................. TTACTAGCTATTAAGGAAGATGAACATCTA 8805 46 100.0 30 .............................................. ATCTTCAATCTTTTGAATGTTTAATTTTAC 8881 46 100.0 30 .............................................. CAATTCAAAAACGTTTCTCTATTTCAAGAG 8957 46 100.0 30 .............................................. TAACTCTATCGCCTGAGGCAGTATTTTACC 9033 46 100.0 30 .............................................. CGAGAATGCTTTGAAGCTATTAACGAGCGG 9109 46 100.0 30 .............................................. AAGGAAATTAGATTTGTAAAAGGCAGATTA 9185 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 74 46 99.8 30 GTTGTGAATTGCTTTCAAAATTGTATTTTTACTTATGATTCCCAAC # Left flank : AAAACCCCATTTTTAGGTTCCATTAAAAATAATTATTTCTTAGATTCTTCAATAGAAACTTTTCTGAATTCTTTTACTAATTTTTCTATTACTAAGCTTGATTTGCGAGCTCTAGCTCCAGCTGCTTTTACTCCTTTTTCAACAAGTGCCTCTGATTCTGTTTTGAAGTTTTCCATTTCAGCGTTAATTCTTGCTACTAAATCTTTCATAATACTATTCTCGTTTTAAATTTTTAAGTTACAAAAATATGAGAATCCTTATATTAATCCAATTAGTTTATTTTAACTAAGCATTAATTCTATATAGCAGTTAAGCATCGTAGCAATAAATGATAAAAGAAAAACCAAGCCGTCACAACGCCAAATACTATTTTACTTCTTACTAATGAATCCTGTTAAAAAATTAGTAATTTACTTGTGGTTTCCAACAGACATGTCGTGACCTGTCCGCTCACGTTAGTATTGCATCATTATAACATTTTTGATATACATTTTAAAGGT # Right flank : CATACATCGATTTAATCAACTGGTATGTTGGTAGTTATAAGTTATTTTTAAAACCAAAAAAAGTATTATTTTTGTACTAAGCTTCAAAAGCATATCCTTTTTTTAAATCCTAGTTTAAAAAAGTTCTAATTGCTGCGATGGTTTTTCAGGCTCTACTGGTTTCTTCCCATAAAAAAGTTCCATCATTCCAAATTGTTTGTCTGTGATTTGCATCACACCAATTTTTCCGTGTTCAGGCAAACTGTTTTTGATTCTTTTGGTGTGTACTTCCGCATTTTCTCGACTGGCACAAAATCGCATGTAAATTGAAAATTGAAACATAGAAAAGCCATCGTCTAATAGCCGCTTTCGGAACAAGCCAGCTATTTTACGTTCTTTTTTTGTTTCAGTGGGCAGATCAAAAAATACTAATATCCACAAACTTCTATATTGGTTTAAGCGCGTGTAATGTTCGTCATACATAAACAGGATATAAAATTTTCCTTGCTGTTCCTTCAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTTACTTATGATTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.74%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTCCCAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.80,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 75768-76453 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMTM01000074.1 Flavobacterium succinicans strain DD5b FLB_contig000074, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 75768 36 88.9 30 A.....A.AA.......................... TACAAATACTACAAAGCACAGGTTAAAAAA 75834 36 100.0 30 .................................... TGCTTTTAGGTGTTGTGATAATGATCGTTA 75900 36 100.0 29 .................................... TCGTCAGGAGATGTACTTATCGCGTGAGA 75965 36 100.0 30 .................................... TCGCTTACTTTATCGAATTCAGATTGCCAA 76031 36 100.0 30 .................................... TGCAAAACAAAATTACAAGTATGCGTGAAC 76097 36 100.0 30 .................................... ATTATCTCTAACGGTATTTGCTTAACGCCT 76163 36 100.0 30 .................................... ATAATTCTTCAATCAACGGAAGTCCGCTTA 76229 36 100.0 30 .................................... TTCAGGAAAATATTGCAAAAGCCAGACAAA 76295 36 100.0 22 .................................... TGTGTGTGTGTGTGTGTGTGTG Deletion [76353] 76353 36 100.0 29 .................................... ATTGGAGCGCAAAGGTAGTGATTGTCTGT 76418 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 99.0 29 GTTGTGGTTTGATTAAAGATTAGAAGACACGATATT # Left flank : TTTTGTTGGCCAGATTTTCAAATTCTTTGGTGAATTTTTCCTGAAGTTGTTCCACCTCATTTTTTTGTTCTTTATGACGCTCTAACAAATTATCAAAATCCACTTCTTTTTTAGAGAGTTGAATGGCCAAACTATCTTTTTCATTTCGAATGATTTCTTTTTCTTGAAGACTATTTTGCAATTGTTTTTCGAAAGTAGTTTTATCAAGTATAGCTTGTTCTTTTTGTTGTTGTAGCAAATGTTGAGCAGCATTGATTTTTTCTTCTAAGCTTATTTTTTGAGTGTCAAAACGAGCCGAAAACAACAGTTTGCCTATAAAAAGACCAAGACCAAGCGCAACGATAAAAACCAATAAAAAAGAAAATAATTCAGACATGGAGGATAGTTTTTTTTGAAAAGTAAAAGTAAGAATTAAAAATGTAGTTTTAAGTGGACTTAAAGATATAAAAAAAGTCCCACCGAAGCAGGACTAAAGGTTTTCACCTACGGCATATAGCCTT # Right flank : TAGTTGGTGTGCTACCTTCTAATAATCAAGAGATTAATTGAAAATATCGTCATAAAAAATGCCTCTTTTTTGCCCTGATAAAGCAAGATTGAGGCATTTTTTATTTTGTAGTTTAAAACAGTTCCAATTGTGTGGGTTGGGGAGCTTTTGGTACTTCGGCTTTGCCCCAAAAATTCATAATGTTGCCAAATTGTTTGTCGGTGATGCGAAGTATACTTACTTTTCCCATAGGAGGTAAGAGTTGGTGAATCCTTTTTTCGTGTACATCGGCGCTTTCACTACTGGCACAATGCCGGATATATACCGAAAATTGCATCATACTGAAACCGTCTTTGAGCAAATTACCTCTAAATTGAGAAGCGTTTCTTCTATCCTTTTTGGTTTCGGTGGGCAGGTCAAAAAATACAAATAACCACATAATTCGGTAGCCGTTTAAGTCCATAGTTTAGGATATTTTATTTTCTTGCGTTCGCCAGTATAGCATTGCTGCAAGGAACTGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAGACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //