Array 1 3-882 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJQM01000011.1 Klebsiella pneumoniae strain EuSCAPE_RS110, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 64 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 125 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 186 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 247 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 308 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 369 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 430 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 491 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 552 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 613 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 674 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 735 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 796 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 854 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCG # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCCAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGTGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCAGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2165-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJQM01000007.1 Klebsiella pneumoniae strain EuSCAPE_RS110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2164 29 100.0 32 ............................. GTTTTCAGGACATCCAGAGTCAGTAACGTTTT 2103 29 100.0 32 ............................. AGATCCGGCTATTTGCCGAAAAGGCCAGGGAC 2042 29 100.0 32 ............................. CAGAATCGCCACATCTGTGAGCTGTTCGACGA 1981 29 100.0 32 ............................. TGATTGTCGCTATACCAGCGCTCAAGGAAAAT 1920 29 100.0 32 ............................. GTCAGATCACGTCAACCACGCTTGATTTTACC 1859 29 100.0 32 ............................. CTCACTAACGCCGTTGCCTGCGATAGCTGATG 1798 29 100.0 32 ............................. GTGATCGGCCCGGCAATGCGTGAGCTAATCAA 1737 29 100.0 32 ............................. TTGAGTGACAGAGAGATTGACCGCCTTGTTTT 1676 29 100.0 32 ............................. CGTTTAACGCAGTGCGAAAAATTACGACACCA 1615 29 100.0 32 ............................. AACTGAATGTTCCAAATCCGGTTGGACGACCA 1554 29 100.0 32 ............................. TTCAGCAGCGCGCTCGTCCCCCTCCTGTCGGA 1493 29 100.0 32 ............................. CTCTACTACGATAACGGATCCCACGCGGGCTG 1432 29 100.0 32 ............................. GCTGCCAGCCCATTCCGTAATTGCCTGTTTCA 1371 29 100.0 32 ............................. CGTCTGGCGAGGTTTACGACGAGCTGACGTTC 1310 29 100.0 32 ............................. TCACGTTTGCAGAACTCGCGGAGGAAGAAGAA 1249 29 100.0 32 ............................. GATCCCCCGGAGGAGACTGATCAAACCACTCG 1188 29 96.6 32 ............................C CGCTGGTTAATGGGCTTCCCGGAAGGGTGGGC 1127 29 100.0 32 ............................. TCTATCGCAACCACCGCTGAGGCGCTGATTGA 1066 29 100.0 31 ............................. TTATTGAAAAAAAACCCCACATCATGTGGGG 1006 29 100.0 32 ............................. CCAATTCATTAAAATACTCTGCAAGTATATCG 945 29 100.0 32 ............................. CCGCTCCACGGTGAGCGGCTGTTCAATGTAGT 884 29 100.0 32 ............................. CATCACGCGCTGGCCAATGTGTTAAACCAAAT 823 29 100.0 32 ............................. GGCATCATTCTCTTCGCTACTCCCGCCGATCA 762 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 701 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 640 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 579 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 518 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 457 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 396 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 335 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 274 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 213 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 152 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 91 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 30 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATTTGAAATTGTTGTGATAAAGTTGGTGAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //