Array 1 65308-64551 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSFX01000003.1 Leptospira weilii serovar Heyan strain L231 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 65307 29 100.0 28 ............................. ACTCACGAAGACTCACGAAGACTCAAGA 65250 29 100.0 32 ............................. AAGAGCTTCACAAATCACTTCAACAGTATGGA 65189 29 100.0 32 ............................. AAACTTGATTCTCAGATAAAGCGAACCGAAAC 65128 29 100.0 31 ............................. ATTTTTTGCGGTCGCCATTTCCATGTATCAC 65068 29 100.0 33 ............................. GATACAACGTTTCCAATACCGCAATCAGCAAAG 65006 29 100.0 33 ............................. GATACAACGTTTCCAATACCGCAATCAGCAAAG 64944 29 100.0 32 ............................. ACCCCGGATTAGATCAAAAGAAAAAGATTTTG 64883 29 100.0 32 ............................. CAGAGAGGGGACAATTGGATCTCGAGGATCAA 64822 29 100.0 32 ............................. TATTTGTTTGTTGATTCAGCTAGTGCTGCTAT 64761 29 100.0 32 ............................. AATACATCAAGTTGAATGAAATTGCTTCAATC 64700 29 100.0 32 ............................. CTAATCGAGGGTTAATACAACGCAATGTCGCG 64639 29 100.0 31 ............................. CAAAATGCTCACGTGTGAGCATTTTGAAAAC 64579 29 79.3 0 ............T.....A....A..ATT | ========== ====== ====== ====== ============================= ================================= ================== 13 29 98.4 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : TGATATACAAGACTTTATAGAGACAGCCCATTAAATACAAACGTGATTTGCCATATTTCTCCGGAAGTGGCTTAATCATCAAAATAGAGTTGTTGAAAAATTCTATAGTTCCAATTGACAAAACCGCTTCAATCGGTCGTTTTTATAAAACAAAAACGGATGGAGTATTAATTTTTCAACAATTCTACTTATCTCCACATATTAGAGTGTCCAAAGTTCCGCGTCTAAAACGCGGGGTTTCTGCTCAAATGAACGGTACTTTATTTTATAGGGATCAGTAATATTTTTAGACAATCTGCTTAGAGGTTTTTCACACTTTCAATTGGTTTTAAAATAAGGCATCTTACTTTCACTCTTTTCAATTTCGTTTTTGGTTTATTGGGCTTGATTACGGTTACGTTTCACACGTTCTTAGTAAGAGGCGATTTGCCATCATAGATTGACTCGAACCCAAAAATAGATTGCAAAAAATCCGGATTTATCCTATACAAGCTTTTAGT # Right flank : TTCAGTCAAAACAAATAAAGACGAAACAGATGAGTAATAAGAATTCGGAAACGGAATCCAATTTAGAATTTTCAATGTAAAAAAACTAAAAACCAGTTTCAAAACCTGAAAATGTAGGAACTCCCACCAATTTTAAACAAGAGGGAAAACCGCACAAAAGCGGTGTAAACTCCAAGGACGTAATCTATGGGAACTCCCACATTTTTTTAAAAACTTGCCGGACACGAAAGATATTCTTTGAAGGTTTCGAGATGAACTCTAAGACAAACACAATACGGAATCAATTCAAAAAAAACCTTTTCTCAAGTTAATCCCGTATTCCAAATACGCTTTGAGACAACAACTCATGTTCATCCAACCTTGACAGTTCATATAAGAACCGTCTAACGCAGCTTGAGATACCTTCCAACCGGATTCGGTAATTTTCACAAGAGTATTGTTTTGATCCAAGGATTCGAAAATCATTTCCGTTTTGGTTTTGTACCCGCCAACAGTTAGAA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 93557-92433 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSFX01000003.1 Leptospira weilii serovar Heyan strain L231 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93556 29 100.0 32 ............................. AAAAGTCCGAAGACAAGAAAATCTTGAAAAAA 93495 29 100.0 32 ............................. ATGATTTCGTTCAAAACTCCTCTTCCGGTAAC 93434 29 100.0 32 ............................. AAAAAAGACGTCGTCTCTATGGAATTCGATGT 93373 29 100.0 32 ............................. GACCGCCCCTTTCTCCGTGAAATTGAAATCCA 93312 29 100.0 32 ............................. AAGAAAAGGGGGAGCTATGCAAGTTCAAGAGA 93251 29 100.0 31 ............................. AACTCTCAAACGCAATGGGCAACGACCCGAA 93191 29 100.0 32 ............................. TTTCAATCGAGAAAGAAGTACAGCAGGTTGTC 93130 29 100.0 32 ............................. GGAGATCCTAAGTGAAACAGAGTGAGAAAAGG 93069 29 100.0 32 ............................. GAGAATGCTCTATTAGATAAATTCGAGGCCTA 93008 29 100.0 32 ............................. TGGTTGTTTGTTTGCCTTTTCGTTTTGGGTGC 92947 29 100.0 31 ............................. ACGTCGGCAATATGGTTGGCCAGGTCGCACA 92887 29 100.0 32 ............................. GAATAAAATTATGAAATTAGAACAAATATCAA 92826 29 100.0 32 ............................. GAACACGTTTTAATAGATAAATTCGAGGCCTA 92765 29 100.0 32 ............................. GAAACTCGACGTGCTCCCTAATCCATTCCTCT 92704 29 100.0 32 ............................. CGACATAAAAGGCAGTAAGAGGAAGGGATAAT 92643 29 100.0 32 ............................. TTCATTGAGCATCACGGCGGCGGAGAGGCGTA 92582 29 100.0 32 ............................. GCGGAAATTTTAAATCGTCAAGAGCATTCGCC 92521 28 93.1 32 .......A..............-...... ATCTATTAAATGCGTCAACATTGACGCATTTG 92461 29 86.2 0 .......................A..ATT | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.9 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : TGGGGTTGAACCGGCGCTCTCAATCCTACAAATACTTGGATCCGAAAATAAATCTGTCGGAATTACGACAAAATCCCCCGTGAAACGATCGGCCCCACAACGCGCCCTTTAGAAAGCGTTGTGCCCGAGTTTCCCTTATTTTTGGGTGGGGGTGGAAAGACTCGGGAAATTTTTCTCTATCAAAAAATCATACTTCTTGCAAGTAAAAAGTATCATTCTTGTCGGAACACTTGAAAAATATCAGTTTTTGATCCTTATTATCCCAAAAGCCTTCTTAATTTCTGGGGTTGGTTATGATAGCAAGCGTTGTGCCGAGTTTCATCTAGCTTCATGATCTTCAAACACAAAAGTTCCCGCACATAGAAGAACTCAATTACGAGTAAGTTCCCTTAGAAACATTACGTTCTTAATAAGAAGATTTGCCATCATAGATTGACTCGAACACAAAAATCAAAAATAGATTGCAAAAAATCCGAATTTATCCTATACAAGTTTTTAGC # Right flank : TTCAGTTTAAACAAAATAGATGGGCAATAGAATTGGGAAACAGAATCCGATTGAAAACTTTCAATGTAAAACTCATTCTCAGGAATCAACACGAAGAATAATATTTCACCGCGATCATTGAATGATAAAGTGCAATTTAAAACCAACCTACATTTGACTTCACTCTCTGTGCAATACCTTTAAACATTTTATGAGAATGAATTCTTCGGTTATCACATACTATGAGAATCGTAGAATCAATGAAAGATATTTCTTATACGAGAATTTACTAAAAAGGAAACTATAATCAGCAATATTTACAACATACGCTCGATAAAACGATTATAGTGTACCGCTTTTGTAAAGTTCAGTAATTACGGACAGTTGTAGGCAAAAATAACTTGCCAATTCGTTCCGTATGAGGAATTTCACGCATCATGTGTGATACGTTTGTCGCCACGCCGTCTTTTACCGGAACAGGTTCGATGATTTTTGGAAAAAATTCGAACAGGATGCTTGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12230-12379 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSFX01000007.1 Leptospira weilii serovar Heyan strain L231 Scaffold6_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12230 29 100.0 32 ............................. ACTCGTCGGTACTTTCAAGGCGATCCCTTCTT 12291 29 100.0 31 ............................. ACATTGCCGCCCTGGGGATGGTTTATTTTAA 12351 29 93.1 0 ..........................T.A | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : GTTCAAAAACAATGCATTCTGCTCTATGCGCAGCCCTCATTTCTACTCAATGAATCTGACTTAGAAATTGCGATCGCCCTCACAAGTTTAAAATTTATAGATCGAAGGATAAACCTATTCTAAATTTTTTTATAATATTCAATTCATATAATTCCGATATACATAATATTATGGTAAATAATTCTTCCCTTTCTAAACAAATTTGTTCCCACCTCCTTCAAAATGATCGGTTCTTTTTCTTTGGATCCGAAATTCGTTTTCACGACGATTTGTTTCACGAGATAATAGATTTTGAAGGTTTATCTTTTATACCCAAGCTAAGTCCGAATCGAAACCAGAAAGAACCTTAAATGATTCCGTTCTTTCAAGGTTTCTTGAAGGGGACGGTTTTTCTTTTACAAACCTAATCGATTTTGTGAACAAAAACACAAGACCGATCATACCTTTAAAAATAAACTCTAAGCTGACATAGTATGTAAAATACTATACGAACTTTTAGT # Right flank : AAAAATGACGAGAATAAAAACCTACCTTCGTTAGATTGAGAATTTTTACAACGTAGAAATGATGAATGTGGCTTTAAGTTTTTGATATTTCTGTTTTGGAAAAATTTCACTTTCTCAAAGTTGAAAGATAAACTTAGAAATTACGATCGGAATATAAAGAATATATCTTAAAAGTCCTTTGTTAATCCCGAAACGAAACAACACTTTTCGGAAGTCAAAAAGTTTGAAAAAGGGAACTGGTGAATCAAAGATAATGATGATTTACTAATTTATGGCGCATCGGAAATGATGAAATCGATATGCGAAATCTTATTGTCGTTTTAATTTTTATCGCAATTACCTCTTCCGGTTTATTGGCGAAAACTTCCGATTTCAAAGGCGAATGTAAACCAAAAGAATGGATCTGTATTCTTACCCGCAACGAAAATAACAAAGTAGAATTTTACGTCCAAAACCAAACACCTTCGGGAGAATATCCTTTTACAATCTATTTCAATTTC # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 42907-43241 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSFX01000028.1 Leptospira weilii serovar Heyan strain L231 Scaffold21_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 42907 29 96.6 32 ............................T ACCTTTCGTTTTGTAGACAACCCCTTTTTCTA 42968 29 96.6 33 ............................A GAAGGGATTCCGTTTCGCCTTGTTCATCCAAAG 43030 29 100.0 32 ............................. TAAATACCACGCATCAACGGTAGAATATACAC 43091 29 100.0 32 ............................. AAGAGCGAATCGTCTTAAAAGGTTATCAGGGC 43152 29 100.0 32 ............................. AATATAAAAAACAGAATAAAAGAAGTTTTAAA 43213 29 89.7 0 ..........................AGC | ========== ====== ====== ====== ============================= ================================= ================== 6 29 97.1 32 CTATTCCCCACATGCGTGGGGTTGAACCG # Left flank : GTAAATTACTTAAAAGGATTATTCCGGATATCAAGGAGCTGATTTATGGTGGTTTTGATTTTGGAGAGAGTGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAACTGAAGCCCGGGGTCTTTGTCGCCTCCATTAACGCGAGAGTTCGAGATCGGATCTGGAAAAAAATTTCCGAAGAATGGAAGTCGGATGCGATCATGTTGTATTCGAGCAACACGGAACAAGGTTACGCTATCCGTTCTCACGGCGATCCTTCTCGCGAGATTATAGACTTCGACGGTTTGCTTCTAATGTCCAAACCCGATTCTAAACGCGATCAGAAAGTAGTCACGAGTATTTCCGACTTTTCGATGGCCACCGAAGATTCTCCTTTTTCAGATCTCAAAGGCTTTTTCAACGAAAAGGCTAATTCCCTTCTTTTAGAAACAGGTGATCCTAATGAATCGAAAGAACAGACATAATTCTTAAGATTCCTATACAAACTTTTAGT # Right flank : CTAGACTTTCCAATCCGAGACCGGTGTTGTATTTTTATTTTCTATGGTGAACCTTTTTCACATGTTAAATTACGAACTTTAACGATTGTGCAAGTAACTTAACCTCGCAAAATCCACTAAAAGATAAGCTGGAAAAATCATAACGAAGCGTATCGCAGAAGAATAAACTCATAAGACATACAAGGAATCTGAATCCAATTCTAAAAATCATTTCCTTTCAAGCTTTCTTGAATCGTTTTAAACTTTGATATAAATCTTCCTTTTATCTAAAAAACTTAAAATTCCCCACCAAACCGACAAATGAAGAACCGCATATAACAAAGATGCGAGATACGGATCTGTAATAAAAACAAGTTTAGAAAAAAACCAGGCTTTGACGCCGACCTGTTTTCCATTCTCCGTCATAATTGTCCAAAGGTTAAGCGTTCTCGCAAGTATTCCGGAACCTACAAAAACTAAAATCGCGTTCTTACCGAATACGAGTAACGGTTGAAAAAAGA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //