Array 1 7177-6902 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWWH01000158.1 Ligilactobacillus equi DPC 6820 NODE_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 7176 29 96.6 32 ............................C AAAACACAAGTAATTTTAAAAAATTTTTTTGA 7115 29 100.0 32 ............................. TAAAGGTTGGGAAGAAGAACTAAGGACGGGAA 7054 29 93.1 32 .......................A.T... GCGGAGTACATTATTGAACAAGTTGATGAAGT 6993 29 89.7 34 AA.......................T... GCTGTGTTAATACTGGGGGAAACTGCAGATTCAG 6930 29 69.0 0 TTG.......T..G......T...GCT.. | ========== ====== ====== ====== ============================= ================================== ================== 5 29 89.7 33 GCATTCCCTACGTATGTAGGGGTGAACCT # Left flank : ATCGAGACTATTTACAAGATACGGTGTTTTTAGTTGCTATTAGCAGTGAAGATGATGAGTTAATTAATACAATTCGTCATTCACTAGCTCATCCCAAATTTCAACTATTTCTCGGTCGACGAGCAAGTGCTCCGGCAGGCGTTTTAAAGACAAGTATTTTTCCAAATATGACACCAATTCAGGTCTTAGAAAATGAGTCTTGGCAAGCAGCAGATTGGTATAAAAAACGTTTGAGAAAGTCTGAAGTAGCCTTAAAAATAGTAGCTGATGTTCAACTACTAAAAGGGCAGAAATACAAAATTTCTAGAGATACAGTTATCTCATTTTCTGAAAAAAAGCGAAAACATGGTTATCGAGGAATTGCAACTAAAACTGTTAAAGTTGCTAATGATAAGTATGTTGCTACTTCAACAAAGCATGATCCGTTATCGTTTTTTGAAACTGAAGTAATCGCGACAAAATGATGACGAAAAACATTGATTTGACAATGTTTCTTTAGT # Right flank : ATCGGCTTTTTGCGTGTTTCTTAAATGATGTTCCCTACTGTTATGGGTGTTTTCCTGTAGGTGTCTCCCTGTGTTCAAGGGTTAGTAACAGGCGATATTAGCCTTGTATATTTGAAAGTTGTTTCCTACTTTTATTGTAGTAGTTTTATAGAAAGGAAAAATTATGTATTATTTATCACGAGTAGAAATTAACAATAAGAATGCAAAAGAAATTAAAGAACTCAACCACTTAGGTACTTACCATAATTGGGTAGAGCAAATGTTTCCTGAAAATATTGAAAATGGTGTTCGCCCACGTCATTTATGGCGTATTGATATCTTAAATGGTGTAAAATATCTATTGGTACTAAGTGAAGAAAAGCCTGATTTGGATATTTTAGAAAGCCATGGTATAAAAGGAACTGGAATTATTAAGGAATATGACAAGCTACTAGATACTATTAAGCCAGATTCAGTATTAAAGTTTCGCTTAACAGCTAACCCTGTACGCCAATTTAATG # Questionable array : NO Score: 3.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATTCCCTACGTATGTAGGGGTGAACCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.17%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22199-21559 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWWH01000158.1 Ligilactobacillus equi DPC 6820 NODE_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22198 29 100.0 32 ............................. ATACGCTTTTGGGTTGGGGACTTGTTTTGTCT 22137 29 96.6 32 ............................C GCTGTTGCACTGCCTGCCCAATCTTTTTAGTT 22076 29 93.1 32 .....T..................A.... CGACTGGCGCTGTCAGCTGGTCAAGACGTACA 22015 29 100.0 33 ............................. CCACAAAAAAGCACTCTTAAAGAACCCCACTAA 21953 29 96.6 33 ........................A.... TGGTCCACGTACGTTTGTTGTCTGTAACCTCTT 21891 29 89.7 32 ........................GAG.. TGCGTATACTTTAAGTGTTGAAAGGATACCGA 21830 29 89.7 32 .....T..................A.T.. ACATCTGAGATTTCAATATGCAAAGGAAAACC 21769 29 86.2 32 .........GT.............GA... GTCTTCTGCGAGATGAACATGGTCTTTGTGTG 21708 29 79.3 31 .......T..T..T..........GAG.. AGACCTAAACGATTAATCGCTTGGGTACTGC 21648 29 86.2 33 ..........T.........T...GA... CTGTCGGCTCAAAACTTTAGCAATCATAAAAAA 21586 28 72.4 0 ..........TACG.A......C.C-... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 90.0 32 GTATTCCCTACGTATGTAGGGGTGTTCCT # Left flank : CTATATAGAAAAACTAAACACCTTACCGTTAAAATATGAAACTAACAACATCATCTTTATTCACGCAGGAGTTCGGTTAGACGGTCAAGAAACAGATCAAGAGTTTGCTTTGTGGTCTCGGGAAGATTACTGGTATATTGACCGCCAAGAACATGATTATGTTTTTGCTCACAATACTACTGGTAAAACAATTGTTACAGGTCATACGCCAACTTGTATGTTATCAGGCGTCTATGAGCAGCCATTCCCAAAGGCAAATCCAGAAGGGGTTATTCTAGGTGATACCGCTACTTACCAATGTCCTGTAAAAATCGTTAAATACGATGGTGAACCTGCTCGAATTTTTACTGACGGAGGATGCCACGCTCGATTAGACGGGCATCATGGTAATGTAGTCGTCTTAGATGACAATGGGGCATTAATTGATATTTTCTCGTGAAAGTTAATGATTTTTGGATAGATTGTTCGTCAGAATGTTGGCAAATCGATGTTATTTTAGT # Right flank : ATGGGGGCAAAATCACGACTGCTTATGTCGAGTAATTGCTATGATGTAGCGCATCAATCAGAAAGGATTTTTTTTAAATGGTAAATACTGAATATTACACACGAAATAATCAAACACCAATGACGGATAAAGACTGGAAAAAATTAATAAATTTAGTAACTGGGATGGAACAAGATTTATCAAGAGTAGGTGTGTCTGTGCCTAGTTCTTCTAAGGTTCATAATATCAAGAAATCTAATAAGACACGTGATTTTCTCTTAAAAAAGCAATTAATTAGTATGGATTGGAATGGCGGCTATGTTATCTCACATAAGGCAACACCAGCACAAAAAACATTAATTCTTAGGGCAATTAATAATATGTTTGCCCTGCAATAATCTACAATACCTATTGACTATGCTTATACGCTTAGTTTGCAACAAATACTAACGAGAAGGAGGAGGCTTTAGATGACAGATAAAGTTATGGGAAAAATTGCTAAGATTACTTTTTCAAAGGGC # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCTACGTATGTAGGGGTGTTCCT # Alternate repeat : GTATTTCCTACGTATGTAGGGGTG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.90,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //