Array 1 45463-45971 **** Predicted by CRISPRDetect 2.4 *** >NZ_QONO01000280.1 Escherichia marmotae strain SC344 NODE_20_length_92376_cov_136.955_ID_585, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 45463 28 100.0 32 ............................ TCCTGTGGGAAGTGGGATTTGTCGGATCTTCC 45523 28 100.0 32 ............................ TCAATAGTCCCCAGCATAGCTACGGCGTTAAT 45583 28 100.0 32 ............................ GCGTAACTTCAATCAACGCCCGCTCTGCCAGC 45643 28 100.0 32 ............................ TCGACGATTTCAACAACTATCTGAACGGCAAC 45703 28 100.0 32 ............................ AAGTCCGCTCATATTCATTGTGAGATTAACAG 45763 28 100.0 32 ............................ TGTTTGTATGATGTTCGCGATTTCGGTAAGGC 45823 28 100.0 32 ............................ ACATCGCCACCGCCGAACGGTTTGTCTTCTTG 45883 28 100.0 32 ............................ AGCATCTGCATGGTGCCCGTGGTCTTAACAAG 45943 28 89.3 0 ..C.................T...C... | C [45966] ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AATTCATTGTCGAGTTGCAGGTTCAACTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCACGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCAATGGGTGCACGTCCGATGGCTCGCGTCATCCAGGACAACCTGAAGAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGCGGTCAGGTCACTGTTGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCACAAAGCGGAAGCAGCGCATTAATCAGATTGTTAAGTAGGTTGGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATGGGGTGGGGGAGGTTCAGCCCCTTTTTTTGATGATGATGGTAAGTTGTTGATAATTAGTGCTGCTGGACGGTAAGGATAAAAAAGGGTGGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ATACGATGATGGCAGAAATTTAGCTGCGTTATGGCGCTCTCAACTCCGAACCATTAGCTGTGACACACAATAACAATTGTGATAATTGCGACGAGAATCAATTTCTCACACAGAAATCAATGCTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGATCTCAAAACCATTCTCCACTCCAGGCGTGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAGTATGTCACCAGTGAAGGCAAGGAGTCGTATTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGTTGGGGATGGGAACGTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCTGGAGTGATGGTTGGTTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 60129-61177 **** Predicted by CRISPRDetect 2.4 *** >NZ_QONO01000280.1 Escherichia marmotae strain SC344 NODE_20_length_92376_cov_136.955_ID_585, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 60129 28 100.0 32 ............................ AATTTTGCCCAGCGTTCAGCATAGCGGCGCTA 60189 28 100.0 32 ............................ GCTGGCAGTGATAAGTCTGTATATAAAGTTAA 60249 28 100.0 33 ............................ CGCGCAGTGATAAATTGTCCGCCCTGGCGGAAT 60310 28 100.0 32 ............................ ACCACGCTGGCTGCAAATATCGTGGAAAAATT 60370 28 100.0 32 ............................ ACCCATTGACCGGGAAGCGCTGGCAAAGTTGC 60430 28 100.0 32 ............................ GAAAACGGCTCGGGGGCGCTCGGCCCCGAAAA 60490 28 100.0 32 ............................ GATCCGTGGGAACGCGCCGCCGCAGGTATTAC 60550 28 100.0 32 ............................ AAGTAGTTTCAGCGGGATCAATAAAACACACT 60610 28 100.0 32 ............................ TTACGCTGTAGAAATAGAAACAGGCAACTGGT 60670 28 100.0 32 ............................ CGTAGCATGGGTATAGTGAGGTTGCCGTGTGC 60730 28 100.0 32 ............................ TGGCTTATGCCGGGGTTTTTTATAGGGGAAAA 60790 28 100.0 32 ............................ CTTCAGACCCACCAGCGACGGCATTTTTTTTA 60850 28 100.0 32 ............................ GAAAAATTCGCCTTTGGATTCTCCGCCTTTTC 60910 28 100.0 32 ............................ AGCAGGTACGCGCAAAAACGCAGAGGAACGAC 60970 28 100.0 32 ............................ GTGATGGCCGATCCTGGGCGTTCTGGTCAATG 61030 28 100.0 32 ............................ CTGGGCCATCATAACGTCGGAGATTGTCATTC 61090 28 100.0 32 ............................ ACGGAGAACATTTTCGCCTGGTTGTCCGTAAT 61150 28 85.7 0 ...........T........T..TT... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACGTGTTTTTTATTTAAGGCGCATTAATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGCTGCCTTACCACATGGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGCAAAACGGTCAAGAAGAATTTATTTAGATTGATTTGTTTGGTTACGCAATGAACACACGATTCATTCGCCCGAGATTATGGTCGTATGCGTTCTGATCAATTGTTTATCAAAAGCTACGAGGGAAATATGAGAGTGAAGAAATACCAATCGACCCATTTTTTAGAGTGACATGTAACTCATTGATTTTGTTTATTACTATTTTGACGTCTCGAAAAAGGGTATGAACCTGTGATTTTGTGATTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTTCA # Right flank : AATCCATACCCCAATATTTATTTTCTTCCTTAATCCCGGGCGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCGTCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGTAACGTTTCAAGAACAGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAACGGTGAGATAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //