Array 1 260152-258923 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSGA01000039.1 Escherichia coli strain upec-89 upec-89_ctg_1643, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 260151 28 100.0 32 ............................ AGTTGGAGTATGCGCGTGGGCTTAAAGATCGC 260091 28 100.0 32 ............................ AGCAAAAACCGGATATAGACAATCTCACTAAA 260031 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 259971 28 100.0 32 ............................ ACAGAACAGGCGAAAGAAAGGGTACGCAGTAA 259911 28 100.0 33 ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 259850 28 100.0 32 ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 259790 28 100.0 32 ............................ TGTACGGCAGTCTATTAGCTATAGGAGCCTGA 259730 28 100.0 32 ............................ AGCGTTCGGTGAATATTTTCCGCCCGAGTCCA 259670 28 100.0 32 ............................ TGGGGATATGCGCGGGATTTGGCGGTGGTTTA 259610 28 100.0 32 ............................ GTAGAAGCTCACCATCAGCGCGTCTTTTTTGA 259550 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 259490 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 259430 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 259370 28 100.0 32 ............................ TCATTCTGTACAGAAAGATCAACCATAATATT 259310 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 259250 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 259190 28 100.0 32 ............................ ATGAAAAGCGCCGCCTTTATGCGCCCGATTTT 259130 28 100.0 32 ............................ GCAAACGGAATTAGCAGCAGCATGATCAAAGA 259070 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 259010 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 258950 27 92.9 0 .......................C-... | T [258931] ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCCTTTTTTGTGTAGGCCATGTCTGGCGCAAAAAAAAGCCCGTACTTTCGTACGAGCTCCTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 269778-269208 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSGA01000039.1 Escherichia coli strain upec-89 upec-89_ctg_1643, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 269777 28 100.0 32 ............................ CGTGCGTATGCTGCCGCGCGATTCAGTACATC 269717 28 100.0 32 ............................ CGGCGCAGTGGTTTCCATTGGTGGGAAAAATG 269657 28 100.0 32 ............................ GCATCACGTGTGGTGACTGAATACGCGGTCAA 269597 28 100.0 32 ............................ AGAAGGGCGGGCGTCGTGTTGTTAAGCGCGAA 269537 28 100.0 32 ............................ AGCGGTCGCCAAGGCAATGCTCGTACGCCGTC 269477 28 100.0 32 ............................ ACATCGACCGGGCCTGACCTCCTGCCTCCACC 269417 28 100.0 32 ............................ TGGATTACCGAGGCCCGAAAATATATTGGTGA 269357 28 100.0 32 ............................ AAAAAGTTGCGTCGCGTGACCGGCACTATAGA 269297 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 269237 28 85.7 0 ....................T...C.CT | C,A [269211,269214] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //