Array 1 79198-78864 **** Predicted by CRISPRDetect 2.4 *** >NZ_BASM01000038.1 Gluconobacter thailandicus NBRC 3257, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 79197 29 100.0 32 ............................. GCTTTCTTTTTTAGCGCTCTGCTTGGACCCGT 79136 29 100.0 32 ............................. ACTGCACGACATGTCTGAACGTGTCTGACGGG 79075 29 100.0 32 ............................. AGCCGCCTTCCGCGTCAGATTGGTATTGAATG 79014 29 100.0 32 ............................. CTGTCTGGCGCTGATCTGACTCCAGAAGGCGG 78953 29 100.0 32 ............................. GCCCGCGACAAAACAGGAGGCTGCTCACCAGG 78892 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GTGTTCCCCGCACGTGCGGGGATGAACCG # Left flank : GCCGTTCCCGGTTATACCGAAGCGCGGCCTCCTGCAGCACGCGGATCATGGGAATCATGGGGCTGCCCATATCCCTGATGCCAGCGAGTTCCCGGTTGCTGGCGGAAAGCAGGGCCGCCAGCGAACCGAAGCGTTCCAGAAGCGCCGGGACAAGACTTTCGGCTTTTTGTTCACGACCCGTAAAAAGATGGACGATCAGCCTCAGAAGTGTGTCGTCGTTCAGATGACGCCCTCGCCCACTCAGGAGTGCAACAGGAGCAGGAATCGTTTCGTGATCCGCTGCCTCCGGCGCGGCTGTAGCTGGTATGGCCTGAAGGAAGGGGCTTCCCAGACAGTCAGAAAATCCATCTTCAGAAGGCTGAGTGTTGGTCATTCGTTTTTCTGGCACTGTAACCCGGACGAGATCAAGGCGTCGTCAGCCTCTCTCGGAAAGGTTGAAAAAATCGGTAGATTTTTCGGGGGCTGTTTTTCTGTTGGAAAACAGTTATCTAACAGGAAGA # Right flank : GGCTCAGGAGAACACCAGCTTTCTTTCATTTTATGTTCCCTGCATACGCAGGATTTTTTTTGAAGCAGGGTGTGAGGCTTAAAGGAGACCTTCCTGACGTAGGCTGCTGAGTTTTTTGTCTTCATTGCTTAGAAGGATGTCATGCAAGACGATGGAAAGTGGCTTAAGTGCGGTTTCCAGAGTTCTTGCAGCCGTTGACAGGGCTGGTGATCTGAGAGCGGGTTGGACATGCAGGCCGATAATGGCGGTAGCATGTAGCGCCAGTGCGCGAATGGCGATGGCGCGGTTCAGGAAGGTGATATCCTCCTCTTCGGGGGCCGCTTCATCCGCAAGGAGGCGGTTGCGGTTATCCAGATAAAGGATGCGAAGCTGTCCGGAAACCGCGCCTTGTAATGTCGTTTCAAGATAGCTTGTCAGTTGTGGCCAGTTCCCCAAAACAGGACGCTCGCGGCTTTCGGCAGAGGCAAGACGTTCTGCGGCGACTGACGGAAGGCGAAGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGTGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 41559-40981 **** Predicted by CRISPRDetect 2.4 *** >NZ_BASM01000028.1 Gluconobacter thailandicus NBRC 3257, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41558 29 100.0 32 ............................. GCCAAACAAGCCCACTTTATACCCTTCTGTTT 41497 29 100.0 32 ............................. GCCTTCTTAACCTTCACGTGGTTTTCGACAAG 41436 29 100.0 32 ............................. CACTGCCAGTTCTCCAGTTCGATCAGCTCGCC 41375 29 100.0 32 ............................. GCTGCGATCGCCTGCGTCAGAATCGTGCCAAC 41314 29 100.0 32 ............................. ACAGGCGATAACGATAACGGCACGATCCTGCT 41253 29 100.0 32 ............................. GATAGTCTGGCTGTGACAGGATCGATCGGCAT 41192 29 100.0 32 ............................. GCGGAGTTCGCTCGCCGCCAGCAGGATACCAC 41131 29 100.0 32 ............................. CAGGTAGATTTTCCACTGTAACTGCCATTCTG 41070 29 100.0 32 ............................. TAGCCCGGAAATCCCATGCGGTTGATGACATC 41009 29 79.3 0 .......T...........A.G.A..T.T | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.9 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : CGCCTCGTCCCCATGATCGAAGATGTTCTCTCCGCAGGAGGCCTGTCACCCCCTGAAGCACCGGAAGAAGCCATGCCTGTGGCCTTTGAAGACCCGGAAGGATTGGCCGATGCTGGTCATCGTGGTTGAAAACGCTCCACCGCGACTGCGAGGGCGGCTCGCCGTCTGGCTGCTGGAGATCCGCGCAGGAGTATATGTCGGTACCTATGGCCGAAAAGTACGCGAGATGATCTGGCAGCAGGTCTGCGCCTATATTGAACAGGGAAACGCTGTCATCGCATGGGCTGCTCCCAATGACGCAGGCTTCGAGTTCGACACCTGCGGCGCCAACAGACGATGCCCCGTGGACCTTGACGGATTTCGTCTGGTCGAGTTCGGTCCAGAAGCTGCCCTCCCCCTCCTGCCCGGCCCCCTCAATTCACCACGAAACCGACGCTGAAAAATCGGTAGCTTTTTGAAGTGGAAGATTTGCACCCATAATCATATACTTACAAACAAGG # Right flank : TTACCGTCAGGCTTCTGAGCCCTGCACAACCGCACTCATTCTCCCAACATTCTTGCACACAAGGAGACAGATCATGAGCAAGCTCAGTAAAGAGGAACGGGACAGCCTGCCTGACAGGGAATTCGGGCTTCCTGAAAAACGGGCCTATCCCGTCGATACAAAGGCCAGGGCACGGAATGCGAAAGCCCGTGCCACGCAGGAGATGGAACGGGGGCTGCTGACACCGGAAGAACGGGATGAGATTGACCGGGCAGCAGATCGTAAACTGAACAAAGACTAAGCCAGAATCAGAAACGGCCCCGGATCACTCCGAGGCCGTTTCATCATTCAATTCCGCAGTCAGTGAGCCTGCGCTGCCCGCAATGGAGCATCTGCCGGAACATCCTTGAGCGGAATGCCCTGATACTTGCCCGTCAGGGTCTTCAGGAACGCAACGATGTCTGCAACATCCTGATCACTGATATCATGATCGGGCGTTTCGTAACGCGCCATGGCACGAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116080-115581 **** Predicted by CRISPRDetect 2.4 *** >NZ_BASM01000028.1 Gluconobacter thailandicus NBRC 3257, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 116079 29 100.0 32 ............................. CCAATACGCACGCCCTTCTTCGTCTTCCGATA 116018 29 100.0 32 ............................. TCATTGGGCAGAACTGAGACCTGCAAAGGAAG 115957 29 100.0 32 ............................. ATAGGAGTCATCCAATCTAGCGCCATTCCTGC 115896 29 100.0 32 ............................. ATGAAAACACCAACGATCAAAACGCCAATTCA 115835 29 100.0 32 ............................. GTCCATAACGCTAAAGCCCGCTTTCTGGCATC 115774 29 100.0 32 ............................. ACGCCGGCAGCCGTGTAGCCGGTCAGAGCAAT 115713 29 100.0 32 ............................. GACGGCATTTTTCAGAAGCACGCGCGCATCAT 115652 29 93.1 14 ................T........G... CGTGGGTCTCCGGC Deletion [115610] 115609 29 79.3 0 ...........G.AA.......C...GG. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.9 30 GTGTTCCCCGCATGTGCGGGGATGAACCG # Left flank : TCGGGAACTGCGCGTCCCGTTCCGGACGGCTCATCATGTCACGGGGCGTCTGGTCGGACTGGCCGAGCAGCGCGGTTGTGATCTGGCGGATCTGTCCCTTGAGGACATGCAGGCCGTAGAGCCGGGAATCAATGCTGGTATTTTCGATGTTCTGACGGTTGAATCCTCACTGGCTTCCCGCACCAGTCTGGGCGGAACTGCTCCGTCCAACGTGCGCCAGCAGGCTCAGGCCTGGCTGGAGAAACTTGGAGACGCTGCATGAAACGTTTTCTGCTTGTTGGCCTGACCCTCGTAGCGCTCAGCACTGGCCTGAGCGCTTGCGGGAAGAAAGGGGCGCCACATGCACCCGGCCCCGCTTCCGACATCACCTATCCCCGGAGTTATCCGCCTGAATAACGGGCTTTCAGATAAGTCTTACAGGGGCCGAAAACAGGCCATAAAAATCGGTAGATTTTTGAGGGTGGAATTTTCCCTTTTCTGTCAGTACCTTGCCAGGAAGA # Right flank : ACTACTGGTGGCCGCAACTTCGATCTCGCCAAATAGTCCTCGCCTACTCGGGCGTGGATCTACCGCGAGAAGCGATTCCACTTTCTTCAGCCTCAGCGTTTTTCTGAAAACTCTACAGATGCAACAGCCGCCATCAGCTGTCCGCCAGAGCCTGGACTACCAGCGGGTGCGTCAGAACGTTTTCTGCAGGCCAGCCCATCGCCCTGAGCGCTCGAACCCCCTCTGCACCATCCCTTTTGGAAAGCTTCTTTCCGCTCTCATCCAGAATAAGAGCGTGATGCCTGTACTCAGGTTCAGGCCATTTCATCAGGGTCTGAATTACACGATGAATGGATGTCGCAGCGTAAAGGTCCTGCCCTCTCGTGATGCAGGTCACGCCCTGAAGGGCATCATCGTGGGTGACGCACAGATGATAAGACATGCCCGTATCTCTGCGTCCCAGAACAATATCACCAAATTCATCCGCACGCCCCGCAATCCGACCATGACCCGCTTCATAC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //