Array 1 217416-217935 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059177.1 Flavobacterium psychrophilum strain P30-2B/09 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================ ================== 217416 37 100.0 32 ..................................... ACTGAAAAAAGCACCATTTTCAATATCAGTCA 217485 37 97.3 32 .......................A............. AGCTGAAAAAACACCCCTTCTAATAGTAGTTA 217554 37 94.6 32 ..................T....A............. GCCTGCAAAAGACCCTTCTCCGATAGTAGTCA 217623 37 100.0 32 ..................................... CTCTGCAAAAGACCCATCTCCAATAGTAGTCA 217692 37 100.0 32 ..................................... ACTGAAAAAAGCACTATTTTCAATATCAGTCA 217761 37 100.0 32 ..................................... ATCTGCAAAAGCCTCATCTCCAATAGTAGTCA 217830 37 97.3 32 .......................A............. GCCTACAAAAGCATACCTTCCAATAGAAGTTG 217899 37 81.1 0 .............A.....C.........TT.TTG.. | ========== ====== ====== ====== ===================================== ================================ ================== 8 37 96.3 32 CAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : GCCGTTCGAAGCTAACCTTTTATTGTGTAAAATATTTTTTTTAAATTATTGTATAATGATTGTTTTTGTTGCCTTATGTGTATAAGWCAYWRCTTCTACAAAGTAATTGCCTTTTGCAAAGCTTGAAACATTTATTTCTAAATGATTAGTTGTTTTTATTAACTGCCCTAATGTGTTGTAAAAATTCACTTTTTCTAATTGTAAGCCCTCTTGCAAGGCTATGTTTAAAATTTCTGAAACTGGGTTTGGGTATATTTTTAAAGCACTTTCTATTGCAAATGAATGATTAGAAAGTAAACCACCAGAAATAGGGCTGAAATTTCTCCAAACCGCGGCTGCCTGATAAGCGACTTGCGTACCAGTAGGAACATTTAAAGCACAGTTTGATTGAGTAATATTGCCGAAGACATTTGCATTAATAACTAAAGGGCTTGTAATATGGCAATTTACTGTCTTTAAACTTCTACAGCCTGCAAAAGCATCCTCTCCAATAGCAGTCA # Right flank : AATATTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTTCTGCTGCTCCAGTAAAATTAGCGTTTCTAGCTACCTTAACAGTAAAAGGAGCTGTTGAAGAAGTAATAGTATAATTTATACGGTTTGCTGTAAAATCTTGTGCTATTCCTAAAAAAGGAATTAAAATAAGAAATAATAATTTTTTCATGTTTTTTGTTTTTAATTAAAAWATTATGTGGTTTACAAAAGTAAGCTAGATTTAGAATAAATACAAATAATACTTTGTTTTTTTGAGATTGGTCTTTAAGTAGGTGTTGTTTCTATATGCCTGCAATTGTCTGATTTTGCTGTTCTTTTTGTTATATTTGGCTTTGCAAACGATTAATTAGGGACTAAAATTCATCAAAATATTGCTTAATGTTCTTTTTTTTATTTAGAAGCTTTTTTTGTATAATGTTATGAATAGAAAAAGGTTAGCCGTTCGA # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : CAGAATTAGGAATTGTAACTGATATTAAACCAGAACA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 1327125-1325563 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059177.1 Flavobacterium psychrophilum strain P30-2B/09 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 1327124 46 71.7 29 A.AA.T....A.ACC...CGGGT....................... TTTTGTTTTCGTCAAATTCCCCATTTGTG T [1327120] 1327048 46 100.0 30 .............................................. ATTAATGCGCTAATTATCGAAGGTAGCACT 1326972 46 100.0 30 .............................................. AGGACGATTATAAATTTATGCTAAATATTA 1326896 46 100.0 30 .............................................. AGATATATCTAATACTAGAGCGTACGACAG 1326820 46 100.0 30 .............................................. AAAAACAATATCGAAAAACTGAAAGAGAAT 1326744 46 100.0 30 .............................................. TATATCCGTGTTTYAAAACTGAAAGAGAAT 1326668 46 100.0 30 .............................................. TATATCCGTGTTTGAATACACATTGCCACC 1326592 46 100.0 29 .............................................. CGTTTTCGCACGTGAAATCAAAGTACTAT 1326517 46 100.0 30 .............................................. TTTTAAAAAATGGTTAAGTAGGAAAACTTA 1326441 46 100.0 30 .............................................. TCCAGTAAGCGAGATGTCGTATATCAAAGT 1326365 46 100.0 30 .............................................. AGCCAATGCCTTGTGTCCTGTTATGTGTTC 1326289 46 100.0 30 .............................................. AAAAGATTTAGCAACATAGATGATTGTTTT 1326213 46 100.0 29 .............................................. TTTTACTTTTTATTTAAAGCAACTGTAAT 1326138 46 100.0 30 .............................................. TAATAAGTTGCTCGTTTCCGTTTATTCCGT 1326062 46 100.0 30 .............................................. AGTAGGTAATGTATTCACAATAGACACATT 1325986 46 100.0 29 .............................................. AAAACGAAATACATACAGCGCACGCATTC 1325911 46 97.8 30 ............................C................. AGGCACTTCTTTAGACTTAAATAAGTCTTT 1325835 46 100.0 29 .............................................. AGTAATAGATGGGGGGTTTGAATGCCGTA 1325760 46 100.0 30 .............................................. TCATCATCTGATGAAAATTGCTGTTCAATA 1325684 46 100.0 30 .............................................. AAGCAAAATAAAATAAAAGAAATAMRTYGR 1325608 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 21 46 98.5 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : TTTGCGTGGTACATCAAATTAGAAACGCTTGTAGATATGTGGTATGGAAAGACAAAAAACAATTTACAACCGATATGAAACTTGTTTATACAGCACCAACAAAACAAGCTGCCGCATTAGCTTTGGAAGATTTTGCTCAAAAATGGGAATCCAAATATGGTTATGCCATCAAATCCTGGAGAGAAAACTGGGACGAATTAACCGTGTTTTTCGACTTCCCGCTAGAAATTCGAAAAATAATCTATACTACAAATTTAATAGAAAATTTAAATGGAAAAATTAGAAAATACACTAAAAATAAAATGTCATTCCCTACTGATGATGCGGTTCTAAAATCAGTTTATTTAGCTTTAAAAGAAGCAACAAAAAAATGGTCAATGCCAATACAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTTGCGGGATAGTGTCATCAA # Right flank : ATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTATGTACTTCGGCATTTTCTCTGCTGGCACAAAATCGTATATAGATCGAAAACTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTAGGTAAGTCAAAAAAAACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //