Array 1 513070-512319 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCKZ010000007.1 Enterobacter cloacae complex sp. P9RS 1701061523_S60_R1_(paired)_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 513069 28 100.0 32 ............................ AGGGAGGAAAGGAGGAGGGGATGGAAACCGAA 513009 28 100.0 32 ............................ GTCGCGCTCAACCATTTTCCGGCGCTGTGCTG 512949 28 100.0 32 ............................ GTACATCTATGATGCGGTATTTGCTCCCCTGC 512889 28 100.0 32 ............................ TGGCGAACCTTGCATCAGAGAAGTCTTTTTAT 512829 28 100.0 32 ............................ GCGTTCGTATGCGCTGGTCGCCTGATAATCAT 512769 28 100.0 33 ............................ TGAACGTGACGCGCACGCGTGGGGGGGACATCT 512708 28 100.0 32 ............................ AGGTTCCGTTGACGTAGTTGTACGTAAGTGCT 512648 28 100.0 32 ............................ GCATAACTTTCGTCGTACGCATCTCGGGAACG 512588 28 100.0 33 ............................ GAAAAAAACAACCCAACCATTAACAACATTGAG 512527 28 96.4 33 .....T...................... GACGATCTGGAAGAAGCGGCAGCCCTCGCTAAT 512466 28 96.4 32 ................A........... TTCAATCGAATTAACCGACAGTACCGGGAGTA 512406 28 89.3 31 ...........C...C......C..... ATAGAAAATAAGGCCTAACAGTCGTCGCACC C [512381] 512346 28 71.4 0 ......C.T..A....A....CCT...G | ========== ====== ====== ====== ============================ ================================= ================== 13 28 96.4 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTACAGGCAGCTTAGAAATATACAGTTACAGACGCGATAAGAGACGAGCAGTGCACTGCCGTACAGGCAGCTTAGAAATGTATAACTTGCCCCGCGTGCTCGTCGTCAATGTGCACTGCCGTACAGGCAGCTTAGAAAAGCACGCCCTCCAGGTCTCCGATAAGCACATTGTGCACTGCCGTACAGGCAGCTTAGAAAGCGTTCGTTATCTGCGCATATTCTGCGGTTGGGTGCACTGCCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTACAGGCAGCTTAGAAAACAACCAAAAACAAGGCGGCAGGATGAACCAA # Right flank : CTGGAACGAACGGCTAAATAATTGTTCAAATAATCAACAGCACCACTAAAAAATAAGGCCGGGAATATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAAAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGATTAAAACGCAGCAAAACAGTTTCGGCGCATTGCCCAAGCGTCACGGTACAACCGAACAGGAAGCGCATTCGTAAAGGGGAGACAACAG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 513427-513279 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCKZ010000007.1 Enterobacter cloacae complex sp. P9RS 1701061523_S60_R1_(paired)_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 513426 28 100.0 32 ............................ TGTATAACTTGCCCCGCGTGCTCGTCGTCAAT 513366 28 100.0 32 ............................ AGCACGCCCTCCAGGTCTCCGATAAGCACATT 513306 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTAGAAAATTGGCTTATTGAATCCGTATGTCTTGCGCATGTGCACTGCCGTACAGGCAGCTTAGAAATAATTCTTTCGTTCATCCCGACTACGGGATAAGTGCACTGCCGTACAGGCAGCTTAGAAAAAGACAGCTTAACATTAGCTAAGACGGCTAATGTGCACTGCCGTACAGGCAGCTTAGAAATTTTGCGGCGCAGATATGCGTGTGATGAATACGTGCACTGCCGTACAGGCAGCTTAGAAATTACCAGGACAAAATGCACAAAAACATACTACGTGCACTGCCGTACAGGCAGCTTAGAAAAATGCACCACTCGTACGACCACGACGAAGGGTGTGCACTGCCGTACAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTACAGGCAGCTTAGAAATATACAGTTACAGACGCGATAAGAGACGAGCA # Right flank : GCGTTCGTTATCTGCGCATATTCTGCGGTTGGGTGCACTGCCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTACAGGCAGCTTAGAAAACAACCAAAAACAAGGCGGCAGGATGAACCAAGTGCACTGCCGTACAGGCAGCTTAGAAAAGGGAGGAAAGGAGGAGGGGATGGAAACCGAAGTGCACTGCCGTACAGGCAGCTTAGAAAGTCGCGCTCAACCATTTTCCGGCGCTGTGCTGGTGCACTGCCGTACAGGCAGCTTAGAAAGTACATCTATGATGCGGTATTTGCTCCCCTGCGTGCACTGCCGTACAGGCAGCTTAGAAATGGCGAACCTTGCATCAGAGAAGTCTTTTTATGTGCACTGCCGTACAGGCAGCTTAGAAAGCGTTCGTATGCGCTGGTCGCCT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 514068-513620 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCKZ010000007.1 Enterobacter cloacae complex sp. P9RS 1701061523_S60_R1_(paired)_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 514067 28 100.0 32 ............................ GATATCCAAACAGCCCAGGTCTGAATAAACTG 514007 28 100.0 32 ............................ TAGAGCAGCGTTATTTCACGCTCTCGTTTTCG 513947 28 100.0 32 ............................ ATTGGCTTATTGAATCCGTATGTCTTGCGCAT 513887 28 100.0 32 ............................ TAATTCTTTCGTTCATCCCGACTACGGGATAA 513827 28 100.0 32 ............................ AAGACAGCTTAACATTAGCTAAGACGGCTAAT 513767 28 100.0 32 ............................ TTTTGCGGCGCAGATATGCGTGTGATGAATAC 513707 28 100.0 32 ............................ TTACCAGGACAAAATGCACAAAAACATACTAC 513647 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTAAATGAGTATTTTGGGTGGATAAAAAAGAGGGTCAGAGAAGGTTTTTTAGCTTTTTTTGTATGCAAATCAGAAGGGTGTGGAGATATTATTTCAGTGCACTGCCGTACAGGCAGCTTAGAAAGCAGCCGGTCACGGTGACCATCCCGACGCAGAGGTGCACTGCCGTACAGGCAGCTTAGAAAGTCCGGGCATTATTTACGATATGCGTGACCAGTGCACTGCCGTACAGGCAGCTTAGAAACATCCTGGTCGCCATCGTCGGGGACAACATCGGTGCACTGCCGTACAGGCAGCTTAGAAAAACGCCGTTGCAGGATAACGGCTCAACGGTTCGTGCACTGCCGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAGGCAGCTTAGAAAGATGCGATTTGCTGCGCTGAGGTATCGCAGAA # Right flank : AATGCACCACTCGTACGACCACGACGAAGGGTGTGCACTGCCGTACAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTACAGGCAGCTTAGAAATATACAGTTACAGACGCGATAAGAGACGAGCAGTGCACTGCCGTACAGGCAGCTTAGAAATGTATAACTTGCCCCGCGTGCTCGTCGTCAATGTGCACTGCCGTACAGGCAGCTTAGAAAAGCACGCCCTCCAGGTCTCCGATAAGCACATTGTGCACTGCCGTACAGGCAGCTTAGAAAGCGTTCGTTATCTGCGCATATTCTGCGGTTGGGTGCACTGCCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 514471-514263 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCKZ010000007.1 Enterobacter cloacae complex sp. P9RS 1701061523_S60_R1_(paired)_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 514470 28 100.0 33 ............................ GCAGCCGGTCACGGTGACCATCCCGACGCAGAG 514409 28 100.0 31 ............................ GTCCGGGCATTATTTACGATATGCGTGACCA 514350 28 100.0 32 ............................ CATCCTGGTCGCCATCGTCGGGGACAACATCG 514290 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGGCTACGCGTTCGCTCTCATCCGGCGTCAGCGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGTTCGTTAATCCCGGTAACGCGTAAAATGTCCGCTTTCGACATGGCCGTCCATTCATGAATATTGTCGAGCACGCTGACGGGCAATCCCTGGTTGAGAAATTCTATCAGCCGCATACCTCTGTTCGCGGGTAAACCGGCGTAGCGCCAAAGTGCGTTATCAGCAGGTTTCTTGGCGGGTATCCAGGTTCTCATGTTACCTCCTGATTAATGTCATTTGTCATGGTTAAGTATAGCCATTTGTCAGATGGAGTGGAATTGGTTTTTTTTTGTGCAGGGTGGTTTGTGAGAAGAACAATGTTTTGACCCTAATTTTTAACGGTTGTGTAATTCATTGATTTTAAATGAGTATTTTGGGTGGATAAAAAAGAGGGTCAGAGAAGGTTTTTTAGCTTTTTTTGTATGCAAATCAGAAGGGTGTGGAGATATTATTTCA # Right flank : AACGCCGTTGCAGGATAACGGCTCAACGGTTCGTGCACTGCCGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAGGCAGCTTAGAAAGATGCGATTTGCTGCGCTGAGGTATCGCAGAAGTGCACTGCCGTACAGGCAGCTTAGAAAGATATCCAAACAGCCCAGGTCTGAATAAACTGGTGCACTGCCGTACAGGCAGCTTAGAAATAGAGCAGCGTTATTTCACGCTCTCGTTTTCGGTGCACTGCCGTACAGGCAGCTTAGAAAATTGGCTTATTGAATCCGTATGTCTTGCGCATGTGCACTGCCGTACAGGCAGCTTAGAAATAATTCTTTCGTTCATCCCGACTACGGGATAAGTGCACTGCCGTACAGGCAGCTTAGAAAAAGACAGCTTAACATTAGCTAAGACGGCTAATGTGCA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 525799-524027 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCKZ010000007.1 Enterobacter cloacae complex sp. P9RS 1701061523_S60_R1_(paired)_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 525798 28 100.0 32 ............................ ACTGGCACCTGCCCCAGCATCCCAAAGATAGG 525738 28 100.0 32 ............................ TGGCGCACAGAGGGCGAGGCGCACGGCTACCG 525678 28 100.0 32 ............................ TGCGCGAAACCAGACCAGCGCACGCGGGACGG 525618 28 100.0 32 ............................ GTCCCGGCGGGGTTAGCCGGGATGGTCGCAGC 525558 28 100.0 32 ............................ AGGGCGATTTCAAACACGCGCTTATTCATCAG 525498 28 100.0 32 ............................ ATGACGCTGGCAACCGCCTTGCCGTTGATCAT 525438 28 100.0 32 ............................ GAACAGGCAGCAGAGCCCGCCCCGCGCGGGCT 525378 28 100.0 32 ............................ GGGGCAGGTTCCAGTAGGCAAGCAGTACGATT 525318 28 100.0 32 ............................ GACGAGCGAAACCGCCGATTTTACGGCGTACA 525258 28 96.4 32 .....A...................... CGCCAGACGTGGGGCGAGCAGGTAAGCGCAAT 525198 28 100.0 32 ............................ TTGTCAGTCTGATGAAAATAAAGGGCCAATGC 525138 28 100.0 32 ............................ AGCATCGAATCCAGCGGCGTGTTAGACGTGGC 525078 28 100.0 32 ............................ TAAGAAGGAGTATTTCCCGCTATACAGCGAAG 525018 28 100.0 32 ............................ GGTGAATATGTCCCGCCACTGGCCGTGGAAGT 524958 28 100.0 32 ............................ TCTTTTTGCTCCTTTTTGTCATCCGTTGACAT 524898 28 100.0 32 ............................ CGCGAGGCCGCCGCAGCTCTTGGGATTAACCC 524838 28 100.0 32 ............................ AGCTGTTCGCCGGTCATTGGTTTATTGGCTGT 524778 28 100.0 33 ............................ GGTTGCAGCATAGTGCTTAAGTGCATCAGTTTT 524717 28 100.0 32 ............................ TCATGGGGGTGGCCTGACAATGCTGAATTTTT 524657 28 100.0 32 ............................ TTGTGAAGCACTATGGCGGTAACTACCAAGGA 524597 28 96.4 33 ....................T....... AAATCGAAGCGAGTGGGAAAAGAACAGTCACAA 524536 28 100.0 32 ............................ TGTCATATCGCCAATACTGATTGATCGACTTT 524476 28 100.0 32 ............................ GTGAACAACATTGAGCTGAGGTTGCAGTTAAT 524416 28 100.0 33 ............................ CACCAGCTGCATCCATGCCCCGAACCCCAAAAT 524355 28 100.0 32 ............................ TCGAGCGTCATCGTTGGGGTTGATTTGGATTT 524295 28 96.4 32 ..........T................. TGCATTGCTTCTGCGTGGATTTGATCGAGGGT 524235 28 100.0 32 ............................ CGACGCGATTCAGGTCACCGGCACAAGTCAGT 524175 28 100.0 32 ............................ CTGCGGAGCGGGGGGACCAACTTCTGAGGCGC 524115 28 100.0 33 ............................ CGTGTCGGAAGAGGGACAGGGAAACGGGGCGTT 524054 28 92.9 0 ................T......T.... | ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACTTCCGCAAACGCAGCCCGTTTGCCGTTGTCTCGGAGCCTACCTGGAAGAGGTGAAATCCGGCCTCACAGAATCAATGCGTGATTTTCAGGTGGTGGAATTTGAGGAAGAAGCGGAACAACCGCGACAAAAAGAGTGGTTGCTTGAAGATACAGAAACGAAGTGTGATTACTGCCGGGCGTTGAATCATGTGCTGCTGGTGTCGCATTTTGACCGCGACATGCTGCCGCTTCTTACAGGACTGCTCCATGACATCACGCATTCTATGGTTGCAGATGTCGTTGCGCCTCAACGTGCAGAAACGGTAGTTCACATTATTTCCTGAATGTAGTTTGTGACGTCCGAAGTAGGCCCCTGACGCCACCGGCTAGACCCTTTTTTTTTATGATTACGTAACCTTTTGATTTATATAATGCGAATTTACGTACCAGAAAAAAGGGTTTTATGCAGGAAGTTGATTATTTTCTTTTCTAACAATAAGATGGCGTAGTTTCCTTTCA # Right flank : GCCCCTCTGGGCTTTAATGCCGTGGAAATAGCGTTACTGTCCCATAGACAGTACAAGTAAACCCATTCCTCACAAATATTCATCTCGTCTATTTAAAACGAAATACCATCATCCACACGCTTTCCATTTGCAGATTAAATAAAAATCCCATTCAGGGGTTAATTATATTTCCGTGTATATATTATTTGTAAAAATAATACTTTTAAAAAATGTTGTATTTTTGTTGAGTTATCACAGAAATTTCCATTCATTTGATATATATCACATTTGTATTTCTCTCATCTCCGATAACATATCCGCATTCATTACCTTGAAATAAAAGCCGTTGCTATGCCTGCAAACAGCGTTACCCCAACAGATTTAAAAACCATCCTGCATTCAAAACGCGCCAACATTTATTACCTGGAGAAATGCCGCATCCAGGTGAATGGTGGGCGTGTTGAATATGTCACCCAGGAAGGGAAAGAGTCTTTTTACTGGAATATTCCCATCGCGAATAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //