Array 1 142520-144141 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKPM01000002.1 Holdemania massiliensis strain BIOML-A1 scaffold2_size244992, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 142520 35 100.0 33 ................................... CAGCAGCAGAAGCAGAAACCCAAGCTCCTACAC 142588 35 100.0 35 ................................... ATTAAATACTTGTCCAGAGCCAGTTGCTATCGCAC 142658 35 100.0 35 ................................... TTTCCATACCATAAATCAATACCTAAAGTTAGACC 142728 35 100.0 36 ................................... GTCAAAACCGATTTTATTGACTAGAGGGTAAGGAAC 142799 35 100.0 33 ................................... GTCAATCACTGTTAGCCGATTAAAATCTACTCA 142867 35 100.0 35 ................................... AACTGTAAAGGGTGAAACACGAAAAGAACAGGCCC 142937 35 100.0 33 ................................... AGTATATACATACAATAAATTTGTTGATGTTTC 143005 35 100.0 33 ................................... CGTTGATTGCTCGCAAGGTGCAGGCAAAGCGTG 143073 35 100.0 35 ................................... GTGATAACCACTTTTTGATAGGTATCATAAGCTTT 143143 35 100.0 34 ................................... TACTGTACAGCTTCATTAAGTGTAATTAGGTATG 143212 35 100.0 33 ................................... CGTTATGTGAAGAATAAAAAGGGTATTGTTGTC 143280 35 100.0 33 ................................... GTTAATCTCAGGTGTTTTCGATACTCGCACCAC 143348 35 100.0 34 ................................... GGCGTCGCTTTGTCAATAAGTTCCTGTAGCACGG 143417 35 100.0 35 ................................... GGTTGTTGCTCCTAATTCGATACCAGTATCATTAA 143487 35 100.0 33 ................................... CTCTGCCGGCTGGTCGATGTCATGTGCTGCGAA 143555 35 100.0 33 ................................... TTGCTCTTAAATCCTTCGCCCTTGCCGGAAAAA 143623 35 100.0 34 ................................... TGGCATCTGAAAAACTTTACCGCCGAGTTGAATA 143692 35 100.0 33 ................................... AGAAGCCAAGAAGTCGGATTTTGGATTGATTAT 143760 35 100.0 35 ................................... CATCGTTTGAGCTTGAATCTGTTCAATACGAAGAA 143830 35 100.0 34 ................................... CATAGCGGGCCACGAAAAAAGATATCATAAATGA 143899 35 100.0 34 ................................... ATCATAGATAATTCCAAAATCTTTGTCATATGGG 143968 35 91.4 33 .............TG.A.................. CCACGTTTCTTACTTAATCAATCAAGGCTTTCA 144036 35 88.6 36 .............TG.A......A........... CTTCCTGTGGCTGAACTATCGTCGATGGGGTTATAC 144107 35 94.3 0 .............TG.................... | ========== ====== ====== ====== =================================== ==================================== ================== 24 35 98.9 34 GTCGCATCGCTCACAGGCGGTGCGTGGATTGAAAT # Left flank : GGCCTGTAAACCGAATGAAAAAACGGCTAAAACGCTGATCAATTCTATAATGGCACAAATCCAGATCGCTCCCTCAAACCAGCATATACAGGCCATTAGGGGAGCCAGAGGACTCAGTATCAACAGCTTTTTTAACCGTACTGGCCGGCGGCAAAGCCAAGCTGAACTCAACCATACAGAACAGTTCAAAATCGTTCCCAATATTACGGTTACTTCCACATAACTGTTCACGCTTTTCTCCTTTCTCTACGTTCTATGATAGAAAAAGAGCTGAGCATTTTTTGTCGTTTTGCCCACCTGGTCTGTGAAAGTTCATTTCAGATAGTTCCGAATAATATATCAGAGATTTCTAGTGCGAACCTGAAGTGAACATAAAATCCCTGAGAGGTTCGCACCAGAAATATGTGAAAAATGAGGAAAGAGTTGCAAGTAGATTGGTTATTCGCTATTATAAAAGTAAGATAAGAATCACCTAAATATCTATTAGTTTCTTATTCGCT # Right flank : TCAAAGTCCTTTTTCTGTAAATGTAGACCCTTCCAAGTCGCATCGCTCACGCTACAAGGATAAGAAAGAACAAACAAAAAGAGGACTGAAAATCCTCTGTTTTATTTTGTGTGTAACACGCTGATTATGACAAAGGCAGCACAATTAGAATTACACCTCTTAAATTAAAATGAATCTGTATTATCTTTTAATAGAACTTCCTTTCCCCATTTCGTGTTTTGTAATGCTTTAAATATCAGCCAGCCTAACATACCTCCTGCCACATTCATAATCAAATCATCAATATCTGCAGAACGGCCAATGAAATACTGCAAAACTTCTATGAATAAAGAACTTCCTGCAAGGCTTATCAGGCAGATTCCTGCTTTGCGGCATTGAGGTAAACATACAGGAATTAAAAAGCCCAGAGGAACAAACATTGCAATATTCAATAATAATTGCTCGATCATTCGCGCAAATCCCATTTGATAGGTTTCCTGTATCCAAACAAACGGAATAAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCGCTCACAGGCGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 188089-189524 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKPM01000002.1 Holdemania massiliensis strain BIOML-A1 scaffold2_size244992, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 188089 33 100.0 34 ................................. ATAATAATTCATAAATGAACGACTATTCATGATC 188156 33 100.0 33 ................................. ATCTGTGTATGACTTATAATCTTCTGCATATGA 188222 33 100.0 36 ................................. GTATGCATACCATTTACCGCTTTGTAAACATCGACA 188291 33 100.0 35 ................................. ATACCATTCTTAACCCTCATTTTACCATTGACTTT 188359 33 100.0 34 ................................. ATGAAAATCATTGTTGACGATGAAGACTTTTACT 188426 33 100.0 33 ................................. TTGTGTAATTCTGTTGTTAACTGTAAATATTTC 188492 33 100.0 35 ................................. AAGGCTAATACATAATTGTTTTGATCCATCCAAAG 188560 33 100.0 34 ................................. AACAGTCAAGGGTGAAACACGAAAAGAGCAGGCG 188627 33 100.0 34 ................................. ACGTTAAAGGCGGAATCGTTTTAGTCGACACCCC 188694 33 100.0 33 ................................. GGTGCTACAAAGAGGAAAAGGTAAAGGAGGCGG 188760 33 100.0 33 ................................. ATGAATTATGCTGACCTTATCCAAGATTTTGAT 188826 33 100.0 34 ................................. ACTGGTTGCAATGTAAGGACCTGTTTCTAAATTC 188893 33 100.0 34 ................................. TATACCTTTACAGAACAGTACAATGCACAGCATT 188960 33 100.0 34 ................................. GTTCCGGGCAATCCGGTACAGTCGGCGACAAACA 189027 33 100.0 33 ................................. ATTAAGAATGCTGAAAACTTTACCAACCGTTCA 189093 33 100.0 33 ................................. TGCCATAGGACATCGAGCGGATCCAATACCTGC 189159 33 100.0 33 ................................. GCCGCAGCGATCGGTTTAACAGAAACAGGGGAG 189225 33 100.0 36 ................................. TGTTACACGACTTCGTGGTGATGATGATGAGATGGT 189294 33 100.0 33 ................................. CAGTTTGGTAATTGCCAAAGCGTTTTCGCGGCA 189360 33 100.0 33 ................................. GGATTTGCAGTTAAGTTTGTATAAGGAGGGCTG 189426 33 100.0 33 ................................. AATAGCTTATAAATATGTTATCTGCTTTAAATA 189492 33 90.9 0 ................T.............T.G | ========== ====== ====== ====== ================================= ==================================== ================== 22 33 99.6 34 GTCGCATCGCTCATGCGGTGCGTGGATTGAAAT # Left flank : AAGATCAAGAATAAAAGAGCATTTCGCGCTTATGCTGAAAATAAAAGGAGGGAATCCCCAATGCAAAAAAATCTGACTACACTCTGCAAGTTAGCTGCCATTCTGATCGTGATCGCCTCTGTCTTCTATTTTTCTTCTGGAGCGCTGAACCAAACACCAAACTTAAATGTTTCCAATATGCCATTGTCACAAATCTTAATACCTAATTGATTATAATTATGATGACTTTGGATATAATGAAAACATTTAGGTTTTTCTTGAACTAATTAATTATAGAAAACTACTTTATGAGGAATATTAGGAACGATTTTCCATCCTGATAATTCCTCTTTTTCTTTGTATTATGATTCTGGTGCGAACCTGAAGTGAACATAAAATCCCAGGGAGGTTCGCACCGGAATTATGTGAAATATGAGGAAATTGTTGCAAGTAAGTGGAGGATTCGATATTATAAAAGTAAGATAAGAATCATCTATACATCTTTAAGTTTCTTATCAACT # Right flank : GAAAAACAACTTACATATATTCTCCTAGAATCAATCGTCGATTAGGATAGTCAAGTCGCCAGCTGCGCCTTGCTAAAAGATCCGCACCGCACAATCCTGCAACTTCCTGTTTCGTGACAGGATATAACACTCTATTCAATACCGGAACATGATAAAGTATTATCTCTGCAGCCCCGACTGTTAAGCGTAGAGAATCAAGTCGTTTTGCCGGAACTTCTGTCACGCCATCAACACCCATCATCGTTTCCAAATCCATAGGCATTGTGTCTGGCAAACTCTGATAAAGCAGAGATCCGCCACTGGTATCTGTATTTCCGCTGTCAAAACCCCACAACATAATCTGATCATTTGTTTGGACTCGCAGAACTGGCATATTATCCCAACCCACAAACTCATGGATTTCACTTTTCTCGGGTATTGAAGGCCTGACCCTCAATTGTTTCTGAGTTTCATCCCATTGCCAACAGGCATGTTGAAGAACATCCCAACCTAATAATCCA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCGCTCATGCGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 36963-35314 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKPM01000010.1 Holdemania massiliensis strain BIOML-A1 scaffold10_size103778, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 36962 33 100.0 34 ................................. GTAATCGCTTAATTGAATCATATCGGCCAGGTAT 36895 33 100.0 33 ................................. CGGTAAAGGCGAAACATCCGATATTGGTATCTC 36829 33 100.0 37 ................................. CGGTTTTAGATTTAGAAATGGACACAGCCTTAAGGCC 36759 33 100.0 33 ................................. ATCCATCCACAACACCTGAAGCGGTTGTTTTAA 36693 33 100.0 34 ................................. TTGCAGAAATGGAAAAGCTTTATAACAAAAAACC 36626 33 100.0 32 ................................. ATCTAGAAATGTCAAAGCTGGAAATTGATTAT 36561 33 100.0 35 ................................. GACAGGGGCAATTAAGCAATTGGCTAAATTAATGC 36493 33 100.0 34 ................................. ATCACGATTTACATTTCGCATGAAACCTGTTTCA 36426 33 100.0 36 ................................. GCAAGTCTGCAGACCGGAACCATTCCAGAGCTGCCG 36357 33 100.0 34 ................................. GATCTTTCTCTGCAATTTTTTCCGATTTCTTAAA 36290 33 100.0 34 ................................. TCGGTCTGATCATGAAGTATAAAAAAGCTCTGTG 36223 33 100.0 33 ................................. GATACTATTGAGCCTTATCTTTATCAAGACGTA 36157 33 100.0 35 ................................. GGTTGATTTAAAATCTTGATCATCAAGTTTCACTC 36089 33 100.0 35 ................................. CAGCGATCCGCTAATAATTTTACCGATGGTGTCCC 36021 33 100.0 34 ................................. CCTTTTAACAATGCCTTGAATTTTGCTATCTCCA 35954 33 100.0 36 ................................. CACAGCTTCCAGCTCATAGAGCTTTTCGGACAGATT 35885 33 100.0 34 ................................. AGAAATGATAAAAAAGGCTCATCGGAAGCCGGTT 35818 33 100.0 34 ................................. ACCGGCGCAGTTATCGTGCAGGATGCCGTTGAAG 35751 33 100.0 34 ................................. AAGGTTAACGCCGGTACCGGGATGACGGTTGTTG 35684 33 100.0 34 ................................. TTCAACCATTGTGGATTTACACCCTGACACTAAT 35617 33 100.0 35 ................................. TTCCTCCGCTCCGTAGATACCGTTACGCATAGCGA 35549 33 97.0 34 .............T................... TCGTCCTAATAAAAAGCCTTTTGGATCTTTTAGC 35482 33 97.0 33 .............T................... TCCCCAAGTTTTGGAGCTGCATCTGCTTTCCAG 35416 33 93.9 34 .............T.T................. ATTATCCTAATCCAGTGATATCTCATACAGTCTT 35349 33 84.8 0 ..............A....C....A...T..T. | A,A,C [35320,35327,35331] ========== ====== ====== ====== ================================= ===================================== ================== 25 33 98.9 34 GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Left flank : GAAAATAATTTCTGATTCATTATGCGGTCAAATCTGGGCTGGTAAAGCTAGTGTTGTATTTTATTGGTCACTCATAGCTTATCGATGTGAATGGCGATATGGAATACGTGCACATCGTGTAGCTTTAATTGATGTTGGACATGTCGGTCAGAATCTGTATTTGGCCTGTGCAGCTTTGAATTTGGGAGCGTGTGGAATCGCGGCATTTGATGATGCTATTTGTAGTAAGCTTTTTGAGTTAGACGTTAATGAAGAATTTGTTGTTTATACAGCACCAGTTGGCACTGTCAATTCCGATGATATAGAAAAAGAAAAAGAATTTTATCGTTTTGTAGAAGAAGAGGGATTATAAGTGCGAACCTGAGGTGAACATGAAATCCTAGGGAGGTTCGCACCAGAAATATGTGAAAAATGAGGAAAGTATTGCAAGTATATCGATGTTTAGCTACGATAGAGATGCGATAAGAATCATATGAGTACTGTTTAGTTTCTTATTAACT # Right flank : CAATTTTCAGCAAGAAAGCTAAAAAAAAGAACCTTAAAAAATAAGGTTTAAAACAATTTTTCGATTGACCAATCAATACCGCAAATTAAAAATTAGATATTAAAAATCAAATTGCTGATCTATGATCGTAATCACCTAATAATTTTAATACAAAAATAGACTAATATCACAAAAAATCAAAAAGTGGTATGATTTGGGTGCTATTTGAAAACAAAGGCAACAAAAAAGCCCTTAACTAAGGGCTTCATCATCAACTGGTGCCGATACCCAGAATCGACAGACCCGCTTTATACGATTCCGCAAAGCCTTATTTTAAAGGCTTTTTTAATAGTTCATTTCATCATTCGGCATCATTTTACAATAGATTTTAAAAATTTTCGTACACTTTTCGTACACTTTTTCATTTCAAAAAATGTTCAGCTTTTGCAATCACATCGGGATCTATTTTTTTGTTTTTTAGACACTCAGCCAGTTCTTTGATCAGACATATTGCCTGGATT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.20,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 43657-44025 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKPM01000010.1 Holdemania massiliensis strain BIOML-A1 scaffold10_size103778, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 43657 33 100.0 35 ................................. GTGATACTGGTATTGAGGTTGATCACCGGCTTGCC 43725 33 100.0 33 ................................. TTTTTAGCTTGCGCGTCTGATTTTTTAAGAGAA 43791 33 100.0 35 ................................. TTGTCCAGCCAGTATAACGGAATGCAACTATCAAC 43859 33 100.0 34 ................................. TTTTGCTGCTACCATTGCCTTGTATACTGCCAGC 43926 33 97.0 34 ......G.......................... ATTTGTTTTATCCTCCCATTTCTCGCAGGTATTA 43993 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 6 33 99.5 34 GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Left flank : GATGATTGTCAGCAATTAATTGAAAATCCACAGGCTTTATCGTCAGAAGAAAAACAGCTTCGGCAATTACGCGGACAATTATTACTTGATCAGCAGCCAGCTGCTGAAGGATACGCCGAGAGCGTTCAAAAGGAAATCAATTCATTTATCAAACAAGGATATATTGAAGAACTAGATGGTAAATTAAGCTTAACTAAGGATGGTAAAGGTGCTTTCTGGATCAGCTTATCAAATGAAGCTTATTACTGATGAATAAATAAGTAATGTGTAGGATAGTTACGATTTAATTAAGTGCTGGAATCATGTTCACTCATCTTTAAATAAAAGAATAACGGGTGCGAACCTGAGGTAAACATAGAATCCCTAGGAGGTCCGCACCAGAAATATGTGAAAAAGAAAGATAATGTTGCAAGTAAAAGAATTATTCGTTATGATAGTAGCAAGTTAAGAATCATTTAAATCTCTTTTAGTTTCTTATTAGCTGTCGCATCGCTCACGCG # Right flank : TGATCGTGGCCATAGCGTCAGAATCGTCCAAATTTTCACATTACTTATGCGACATATCCACTGGAATTTGTAATTCATGCTTGTGATTTGCAGAGTATTCAATTACTTGTAAATGTAAAGAAAGGTAGAAATAATTAGAAAAAGAGGTATAATAAAACTATAGATAATTGTTGTCAGGAGGTGTGTATATGTTTTTAGCACACTGGAATGAATCAAAACAACAAGCACAGTCTTTGCAAAATCATAGTGAAAATGTAGCATGTTTAATGCAAGAAAATTGTTTTTCACTTGGTCTTTCTTCTACAGGGAAACTTATTGGTTTACTTCATGATGTTGGTAAAGCAAATCCGATTTTTCAAACATATATGCTAGAGAATCAAATCGAAAAAAAGGGAAAAATCAACCACGCTGCAGCCGGAGCGCAACTTTTAAAAGAGAAAATAATAGATGCGGAGATTTCGAACAAAGAGATTAATCCAAGCATTAATAAGCTGTTATTT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 52322-53759 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKPM01000010.1 Holdemania massiliensis strain BIOML-A1 scaffold10_size103778, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 52322 33 100.0 33 ................................. GCAATCATAGTCATATTTTCTCGCCAGCATTTC 52388 33 100.0 33 ................................. AAAGTAAAACTTAGAAGCATCTAAAGTAGGCCC 52454 33 100.0 33 ................................. ATTGCCGACGCGTCATTTGCCGTGTTATGAACA 52520 33 100.0 34 ................................. GATTAAGTTATTTCTTGATGAAATTTGGATGGGT 52587 33 100.0 34 ................................. TGCCGTTGTTTAATATCATCATCAAAAACAGCAT 52654 33 100.0 35 ................................. TTTGGCGATTAATTAGAATAATAGCAATTATTTCA 52722 33 100.0 35 ................................. GATTAGCATACCGGGGTGGATGGACATATTGTAAT 52790 33 100.0 35 ................................. TGTACCTTTGTGATATTGGAACTGTTGGTGTCTAC 52858 33 100.0 34 ................................. AAGTGTAGTTTTGAATGATTTTAATAGGAAGATT 52925 33 100.0 34 ................................. CGTCAGTCGATCCTGCCGGCTCACCGCCGCCGTC 52992 33 100.0 33 ................................. CGTTTTCAAACTAAATCCTTTAATATCAACCCA 53058 33 100.0 33 ................................. CAGGAAAAAAAGATCATTCATCAAAAGGGTAGC 53124 33 100.0 33 ................................. TAGGTCAGGATGAGGCAGGCAATCTGTTAAACC 53190 33 100.0 33 ................................. TGCGAGATCCTCAATCAAAAAGGTTTCAGGGCC 53256 33 100.0 35 ................................. GCAGCCCTAAAAAGTACCCATCATGAGGCGGGGAA 53324 33 100.0 35 ................................. ATTGAAGCCCAGATCATAGAACCGGCGGACTAACG 53392 33 100.0 33 ................................. ACCCTTGATACCTTGAGCGCCGGACAAGTCAGT 53458 33 100.0 35 ................................. CGGAGGAGAGCATCACAATATCAACACTCGTAATA 53526 33 100.0 35 ................................. ACTCCTCACCCCAAAAGCGTGGTTTATGGCTTACC 53594 33 100.0 33 ................................. TGCTAATAAAATAAGCTATTTTGCTAATACAAC 53660 33 100.0 34 ................................. GAACTCGCCAAGGCGTTGGGTACATATCTCCAAA 53727 33 93.9 0 .............................GG.. | ========== ====== ====== ====== ================================= =================================== ================== 22 33 99.7 34 GTCGCATCACGCAAGTGGTGCGTGGATTGAAAT # Left flank : GTGATTTGGATGCCTATCCACCTTTTTTATGGAAGTAGGCAAATTTATGTTAGTGTTGATTACTTATGATGTGAATACACAGACAAAAGCAGGAAGAACAAGACTGCGTAAAGTGGCAAAACAATGTGTAAACTATGGTCAAAGAGTACAGAATTCTGTGTTTGAATGTTCAGTGGATAATGCTAAATTAATTGAAATACAACATATACTGGAGGGCTTGATTGATAAGGAAGTAGATAGTTTAAGATTTTATATTCTTGGAAACAAATATAAAAATAAGGTTATTCATATTGGTGCCAGACCTAGTTTTGATGTAAATGATCCGTTGATTATTTAAGTGGTAGTTTATAAGGTGCGAACCAGAAGTGAACATAAATTCTCTGGGAGGTTCGCACCAGAAATTTGGGTGAAAAAGAATAATATTTAACAAGTGCCTACAAAGAACAGAAAGTAAAGCGGAAATAAGAATCATATTTCAATAGTCTTGTTTCTTATTTGCT # Right flank : TAACTGCTAAATTTTGGATAACCTTAGAATCATAGGGAAGATATGTTTCTTATTTGTAAACAGAAAACTTAATTGCGGAAAAAACTGTGATATACTAAGAACAAAGGAGTGATCCCAATGCAAGCAAAAAATGCACCACGTTATCAACAAATTGCAGCGGATATTGCTGCAAAAATTGCGGGTGGTGAATATAAAATTGGGGATAAAATTTTTGCGCGTTCTTCGTTAGCTTCACAATATCATGTTTCAAGCGAAACCGCCCGGCGTGCCATCTGCGTACTTTGTGATATGAAAATTGTTGAATCCATACAAGGGATAGGCGTTGTGATTCAATCTCCAGAAAATGCCGTAATGTATGTCAGACAATTTGATGAAGAGTATACGATATCGGCAATGAAAGAAGGGTTAATTGAATCACTGAATGAACAAAATTTAAGAAACAACGAAATAAAAAATCAGCTCGAAAGTTTGCTGGACACAGTTACGCGATTTAAGGCCTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCACGCAAGTGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.30,-8.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 4 93610-92366 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKPM01000010.1 Holdemania massiliensis strain BIOML-A1 scaffold10_size103778, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 93609 33 100.0 33 ................................. ATACCGTAACGAACCGATTTCAAAGGCAATGAT 93543 33 100.0 33 ................................. CCCTGCATAATTATTCGGCGTGGCACTGACTTG 93477 33 100.0 34 ................................. GCCGTTACAGGAAGCGACGCTGTTAAAAGACCCG 93410 33 100.0 33 ................................. ACAAGGTATTCGATAAAAGCTTTGACGACTTTA 93344 33 100.0 34 ................................. TGGGTTGAAATTTTTATCGGCTATAATGGCGGGC 93277 33 100.0 35 ................................. ATTAAAAGACGGGGAAAAAGTAGTGATTGATGGCC 93209 33 100.0 35 ................................. CGGTGTGGCTGTGTTTAACCTGCGCAAAGGGGATT 93141 33 100.0 34 ................................. CCATTTGCTCATAATAGGATAATGATTTATCAAG 93074 33 100.0 35 ................................. ATGGCGCTGTTTGCGGATCTGAACGATGGGACGCC 93006 33 100.0 35 ................................. TGTAGAGGGATCAAAGTATTGGTTTAACTGCAATC 92938 33 100.0 33 ................................. AGACCGAGATAATTACAGATCAAACGCATCCGC 92872 33 100.0 35 ................................. GCCAAGCAGTACCTGGCGGCGGGTGGCAACTATTT 92804 33 100.0 34 ................................. ACTTATCGTTCATTGGAACGAATCGCGAAACTTG 92737 33 100.0 35 ................................. AAAAGATCAACAAGCCCAGATATTAAACCGCCTAA 92669 33 100.0 34 ................................. ACCACTTATATACATACGCCACTCTATAGACCAA 92602 33 100.0 34 ................................. TGTTTTGCTTTTTCGGATTCCAAATCAGAGTTAA 92535 33 100.0 34 ................................. AAGTAATGGCGGTTTTTGCGAATTTTATGGTGGC 92468 33 87.9 36 ........A.G..A.T................. AGTGTAAAGAGTGTGGCAACATCAGCACTGAAGTTA 92399 33 75.8 0 ..T..........A..T..T.T..C...A.G.. | T [92379] ========== ====== ====== ====== ================================= ==================================== ================== 19 33 98.1 34 GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Left flank : GTTCAGCAATTTGAAAACAATCTGATTTATCCCCGAGTTGTAGGAAACTCAGTAGGCCTTCCAGGAATCTGGGTTCTGCTTTCCATCGTGGTGTTCGGCGGTTTATTGGGATTATTTGGCATGTTAATTGCTGTTCCAGCAACAGCCGTACTGTACACTTTATTAGGTGAATTCGTTAATAGCCGGATGCGGAAAAAAGGACAGGTTCTAGATGAGTCAGGCTTACTAAGTGTGAAGTCAAAGGTAAAAGAAGAAGCTTCACCTACTGCTGAGGATGAAATCAATTAAACTTTAAATATTAGAATTTCACTGCAAGGCTTTTAAAAGTCTTGCTTTTTTATACTTTAATCCAGTGCGAACCTGAGGTGAACATGAAATCCCTAGGAGGTTCGCACCGGAAATATGTGAAAAATGAAGAAAGTATTGTAAGTACAACGATGTTTAGTTATGATAGAGATACGATAAGAATCATATGGGTACCTTTTAGTTTCTTATTAACT # Right flank : TGTTCCATTTGTCTCTGTTAATTTACAAATCAGTATTGCTTAGCAGCTAACCAGTTCTTATCTCATTCAAGGATATACATCGAAAAAAGCCTGTCTTCATTTTAATATGAAAACAGGCTTTGCTACTTTTTCCAACTAATCTACATCTTGGTCTGCAACATTCCAAGGACGAATAACACAACCATCTGTTGTCGGTTCCGCAACATACACCTTCGCAGAATGATTCTGATCACTGACAACAAAGGCAAATTTGATATTGGTTCCAACACCCCAGCGGCCATCTTTATCTACACAGATTAAGGAAATCGCCTCAGCTTGTCCACGCTTACGAATCAACTTTTGGGTAAATTCCGCAACTAAAGTTGAGGCCGCCTCTTGGGGCTCCTGCCCCTGCTGCATTCTACGCACTACTTCATAGCTCAGACAGCCTTTCATAATTTCCTCGCCAACCCCCGTCGCTGCCGCGGCTCCAATATCGCTGTCTGCATAGAAACCACTTC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.20,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //