Array 1 115051-114350 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSSK01000011.1 Escherichia sp. R18 NODE_11_length_132289_cov_39.7676, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 115050 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 114989 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 114928 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 114867 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 114806 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 114745 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 114684 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 114623 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 114562 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 114500 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 114439 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 114378 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 132289-130552 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSSK01000011.1 Escherichia sp. R18 NODE_11_length_132289_cov_39.7676, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 132288 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 132227 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 132166 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 132105 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 132044 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 131983 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 131922 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 131861 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 131800 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 131739 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 131678 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 131617 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 131556 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 131495 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 131434 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 131373 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 131312 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 131251 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 131190 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 131129 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 131068 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 131007 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 130946 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 130885 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 130824 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 130763 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 130702 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 130641 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 130580 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 188-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSSK01000020.1 Escherichia sp. R18 NODE_20_length_93103_cov_39.0677, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 187 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 126 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 65 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GCGGCTTGTTTAATTGCGTGGAACGTCTCAATTGTGT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //